Wall clock time and date at job start Tue Mar 31 2020 04:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36837 * 125.05798 * 2 1 4 4 C 1.34238 * 109.92644 * 179.87999 * 3 2 1 5 5 C 1.50705 * 126.49910 * 180.14466 * 4 3 2 6 6 H 1.08999 * 109.47293 * 174.46098 * 5 4 3 7 7 C 1.50707 * 109.46887 * 54.46306 * 5 4 3 8 8 H 1.07992 * 120.00029 * 334.53232 * 7 5 4 9 9 C 1.37880 * 119.99586 * 154.52890 * 7 5 4 10 10 N 1.31507 * 119.99962 * 354.80141 * 9 7 5 11 11 Si 1.86802 * 119.99715 * 174.79830 * 9 7 5 12 12 H 1.48492 * 109.46987 * 90.00172 * 11 9 7 13 13 H 1.48495 * 109.47039 * 210.00281 * 11 9 7 14 14 H 1.48500 * 109.46987 * 330.00056 * 11 9 7 15 15 C 1.50701 * 109.47163 * 294.46464 * 5 4 3 16 16 C 1.38239 * 119.99733 * 66.49809 * 15 5 4 17 17 C 1.38243 * 119.99519 * 179.81132 * 16 15 5 18 18 C 1.38234 * 119.99915 * 0.39362 * 17 16 15 19 19 C 1.38236 * 120.00164 * 359.85798 * 18 17 16 20 20 C 1.38230 * 120.00101 * 246.77294 * 15 5 4 21 21 C 1.46477 * 106.99869 * 0.37023 * 4 3 2 22 22 C 1.39635 * 134.02987 * 179.79273 * 21 4 3 23 23 C 1.36625 * 119.76230 * 179.97438 * 22 21 4 24 24 C 1.38831 * 120.52983 * 0.02562 * 23 22 21 25 25 C 1.37749 * 120.66690 * 0.02562 * 24 23 22 26 26 C 1.37680 * 125.06779 * 180.30383 * 2 1 3 27 27 H 1.09001 * 109.47031 * 269.69177 * 1 2 3 28 28 H 1.08998 * 109.46984 * 149.70078 * 1 2 3 29 29 H 1.08997 * 109.47599 * 29.69779 * 1 2 3 30 30 H 1.08002 * 125.03121 * 359.97438 * 3 2 1 31 31 H 0.97008 * 119.99924 * 179.97438 * 10 9 7 32 32 H 1.07999 * 120.00292 * 359.97438 * 16 15 5 33 33 H 1.07997 * 119.99960 * 180.23047 * 17 16 15 34 34 H 1.08000 * 119.99934 * 179.83623 * 18 17 16 35 35 H 1.08003 * 120.00198 * 179.97438 * 19 18 17 36 36 H 1.08002 * 119.99982 * 359.97438 * 20 15 5 37 37 H 1.08000 * 120.11763 * 0.02562 * 22 21 4 38 38 H 1.08004 * 119.73734 * 180.02562 * 23 22 21 39 39 H 1.08001 * 119.66534 * 179.97438 * 24 23 22 40 40 H 1.08000 * 120.11003 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1201 0.0000 4 6 3.5468 0.7697 0.0026 5 6 4.7284 1.7052 0.0066 6 1 5.6480 1.1287 0.1073 7 6 4.6068 2.6630 1.1637 8 1 3.6345 2.8969 1.5713 9 6 5.7371 3.2407 1.7021 10 7 6.9273 2.8793 1.2750 11 14 5.5778 4.5366 3.0380 12 1 5.5821 3.8784 4.3691 13 1 6.7197 5.4818 2.9494 14 1 4.3049 5.2798 2.8573 15 6 4.7601 2.4799 -1.2856 16 6 3.7597 3.3906 -1.5702 17 6 3.7909 4.1041 -2.7538 18 6 4.8180 3.9010 -3.6564 19 6 5.8155 2.9865 -3.3742 20 6 5.7863 2.2758 -2.1889 21 6 3.5946 -0.6943 -0.0046 22 6 4.6296 -1.6315 -0.0094 23 6 4.3363 -2.9659 -0.0154 24 6 3.0169 -3.3979 -0.0172 25 6 1.9805 -2.4905 -0.0136 26 6 2.2560 -1.1269 -0.0060 27 1 -0.3633 -0.0055 1.0277 28 1 -0.3633 -0.8873 -0.5185 29 1 -0.3634 0.8926 -0.5091 30 1 1.8832 2.1356 -0.0004 31 1 7.7225 3.2860 1.6535 32 1 2.9553 3.5466 -0.8666 33 1 3.0115 4.8183 -2.9745 34 1 4.8409 4.4565 -4.5823 35 1 6.6177 2.8275 -4.0796 36 1 6.5657 1.5613 -1.9684 37 1 5.6584 -1.3028 -0.0076 38 1 5.1372 -3.6905 -0.0187 39 1 2.8009 -4.4561 -0.0224 40 1 0.9574 -2.8365 -0.0155 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002548267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:29 Heat of formation + Delta-G solvation = 82.245631 kcal Electronic energy + Delta-G solvation = -22505.631530 eV Core-core repulsion = 19443.350928 eV Total energy + Delta-G solvation = -3062.280603 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.132 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.74773 -38.25681 -36.53151 -34.30248 -32.17967 -30.70584 -29.98433 -29.86386 -28.27701 -27.22345 -25.22535 -23.25492 -22.10417 -21.59724 -20.84547 -20.42448 -18.64850 -16.48557 -16.28860 -16.07792 -15.38442 -14.95027 -14.86341 -14.50547 -14.17192 -13.79649 -13.51136 -13.35894 -12.73952 -12.58582 -12.47934 -12.40105 -12.15174 -11.97984 -11.66093 -11.44778 -10.97677 -10.95134 -10.84879 -10.72086 -10.44140 -10.18946 -10.01164 -9.78428 -9.24014 -8.82752 -8.47300 -7.99100 -7.61423 -7.56205 -6.83145 -6.05184 -4.08659 1.68355 2.14237 2.34659 2.41189 3.29086 3.33811 3.36310 3.37815 3.49460 4.39519 4.49340 4.81193 4.99997 5.15737 5.30113 5.34849 5.43665 5.48057 5.52241 5.58703 5.70141 5.79347 5.88935 5.96565 6.06219 6.17688 6.32753 6.40942 6.47218 6.55703 6.60384 6.79164 6.93011 6.95366 7.07201 7.14151 7.34329 7.35898 7.40021 7.52070 7.64612 7.80669 7.82006 7.90636 7.99693 8.08928 8.36071 8.94827 9.54190 11.02456 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.011801 B = 0.006369 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.205175 B = 4395.424991 C = 5090.092735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.495 5.495 3 C 0.026 3.974 4 C -0.102 4.102 5 C 0.130 3.870 6 H 0.068 0.932 7 C -0.503 4.503 8 H 0.058 0.942 9 C 0.069 3.931 10 N -0.882 5.882 11 Si 0.889 3.111 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.273 1.273 15 C -0.010 4.010 16 C -0.111 4.111 17 C -0.133 4.133 18 C -0.155 4.155 19 C -0.128 4.128 20 C -0.118 4.118 21 C -0.102 4.102 22 C -0.056 4.056 23 C -0.164 4.164 24 C -0.108 4.108 25 C -0.140 4.140 26 C 0.094 3.906 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.161 0.839 31 H 0.262 0.738 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.887 -6.065 -5.220 11.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.180 5.180 3 C -0.095 4.095 4 C -0.108 4.108 5 C 0.111 3.889 6 H 0.086 0.914 7 C -0.540 4.540 8 H 0.076 0.924 9 C -0.134 4.134 10 N -0.519 5.519 11 Si 0.717 3.283 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.198 1.198 15 C -0.011 4.011 16 C -0.129 4.129 17 C -0.152 4.152 18 C -0.173 4.173 19 C -0.147 4.147 20 C -0.136 4.136 21 C -0.107 4.107 22 C -0.075 4.075 23 C -0.184 4.184 24 C -0.127 4.127 25 C -0.161 4.161 26 C -0.012 4.012 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.178 0.822 31 H 0.072 0.928 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.140 0.860 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.044 -5.959 -5.185 12.008 hybrid contribution -0.058 0.937 0.814 1.242 sum -9.102 -5.022 -4.371 11.277 Atomic orbital electron populations 1.21761 0.78436 1.03284 1.02169 1.43679 1.05046 1.04503 1.64809 1.21541 0.90244 0.90065 1.07647 1.20879 0.94649 0.90894 1.04355 1.16489 0.91816 0.91033 0.89552 0.91424 1.20942 0.93048 1.25509 1.14541 0.92416 1.24951 0.95381 0.96611 0.96479 1.69914 0.97389 1.41895 1.42685 0.86638 0.77801 0.81771 0.82125 1.20678 1.21181 1.19820 1.20596 0.91632 0.94375 0.94493 1.20924 0.99449 0.96752 0.95748 1.20958 0.98589 1.00260 0.95357 1.20773 0.96470 1.00640 0.99440 1.20959 0.98412 0.97786 0.97501 1.21053 0.98873 1.00187 0.93522 1.19314 0.91748 0.93831 1.05807 1.20370 0.98486 0.91891 0.96713 1.20489 0.96093 0.95389 1.06387 1.20624 0.92442 0.98116 1.01538 1.19833 0.98705 0.89416 1.08146 1.18241 0.90508 0.88096 1.04368 0.92066 0.90961 0.90449 0.82197 0.92799 0.87018 0.87765 0.87872 0.87676 0.86956 0.86032 0.86777 0.86719 0.87360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.00 11.03 59.85 0.66 1.66 16 2 N -0.50 -8.37 3.18 -121.80 -0.39 -8.76 16 3 C 0.03 0.50 9.82 -16.73 -0.16 0.34 16 4 C -0.10 -2.21 5.03 -102.71 -0.52 -2.73 16 5 C 0.13 3.14 2.37 -94.07 -0.22 2.91 16 6 H 0.07 1.80 7.27 -51.93 -0.38 1.43 16 7 C -0.50 -13.11 7.54 -34.44 -0.26 -13.37 16 8 H 0.06 1.48 7.49 -52.49 -0.39 1.09 16 9 C 0.07 1.86 5.45 -17.82 -0.10 1.76 16 10 N -0.88 -24.70 12.91 55.43 0.72 -23.98 16 11 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 15 C -0.01 -0.23 4.77 -104.62 -0.50 -0.73 16 16 C -0.11 -2.30 8.49 -39.58 -0.34 -2.63 16 17 C -0.13 -2.47 10.05 -39.58 -0.40 -2.87 16 18 C -0.16 -2.79 10.05 -39.58 -0.40 -3.19 16 19 C -0.13 -2.44 10.05 -39.58 -0.40 -2.84 16 20 C -0.12 -2.56 9.67 -39.59 -0.38 -2.94 16 21 C -0.10 -2.09 6.35 -105.14 -0.67 -2.76 16 22 C -0.06 -1.05 10.05 -39.64 -0.40 -1.45 16 23 C -0.16 -2.60 9.97 -39.95 -0.40 -2.99 16 24 C -0.11 -1.58 10.01 -39.54 -0.40 -1.98 16 25 C -0.14 -2.17 9.97 -39.43 -0.39 -2.56 16 26 C 0.09 1.72 6.81 -83.99 -0.57 1.15 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 29 H 0.08 0.77 8.13 -51.93 -0.42 0.35 16 30 H 0.16 2.83 6.64 -52.49 -0.35 2.48 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.11 2.21 6.29 -52.49 -0.33 1.88 16 33 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 34 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 36 H 0.11 2.41 7.96 -52.49 -0.42 1.99 16 37 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 38 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 39 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 40 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 339.17 15.07 5.11 5.11 Total: -1.00 -29.91 339.17 -10.65 -40.55 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.23 Total: 6.30 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: -5.84 Total: -35.22 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.33 Total: -32.74 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.91 -10.65 -40.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002548267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.800 kcal (2) G-P(sol) polarization free energy of solvation -29.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds