Wall clock time and date at job start Tue Mar 31 2020 04:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36837 * 125.05798 * 2 1 4 4 C 1.34238 * 109.92644 * 179.87999 * 3 2 1 5 5 C 1.50705 * 126.49910 * 180.14466 * 4 3 2 6 6 H 1.08999 * 109.47293 * 174.46098 * 5 4 3 7 7 C 1.50707 * 109.46887 * 54.46306 * 5 4 3 8 8 H 1.07992 * 120.00029 * 334.53232 * 7 5 4 9 9 C 1.37880 * 119.99586 * 154.52890 * 7 5 4 10 10 N 1.31507 * 119.99962 * 354.80141 * 9 7 5 11 11 Si 1.86802 * 119.99715 * 174.79830 * 9 7 5 12 12 H 1.48492 * 109.46987 * 90.00172 * 11 9 7 13 13 H 1.48495 * 109.47039 * 210.00281 * 11 9 7 14 14 H 1.48500 * 109.46987 * 330.00056 * 11 9 7 15 15 C 1.50701 * 109.47163 * 294.46464 * 5 4 3 16 16 C 1.38239 * 119.99733 * 66.49809 * 15 5 4 17 17 C 1.38243 * 119.99519 * 179.81132 * 16 15 5 18 18 C 1.38234 * 119.99915 * 0.39362 * 17 16 15 19 19 C 1.38236 * 120.00164 * 359.85798 * 18 17 16 20 20 C 1.38230 * 120.00101 * 246.77294 * 15 5 4 21 21 C 1.46477 * 106.99869 * 0.37023 * 4 3 2 22 22 C 1.39635 * 134.02987 * 179.79273 * 21 4 3 23 23 C 1.36625 * 119.76230 * 179.97438 * 22 21 4 24 24 C 1.38831 * 120.52983 * 0.02562 * 23 22 21 25 25 C 1.37749 * 120.66690 * 0.02562 * 24 23 22 26 26 C 1.37680 * 125.06779 * 180.30383 * 2 1 3 27 27 H 1.09001 * 109.47031 * 269.69177 * 1 2 3 28 28 H 1.08998 * 109.46984 * 149.70078 * 1 2 3 29 29 H 1.08997 * 109.47599 * 29.69779 * 1 2 3 30 30 H 1.08002 * 125.03121 * 359.97438 * 3 2 1 31 31 H 0.97008 * 119.99924 * 179.97438 * 10 9 7 32 32 H 1.07999 * 120.00292 * 359.97438 * 16 15 5 33 33 H 1.07997 * 119.99960 * 180.23047 * 17 16 15 34 34 H 1.08000 * 119.99934 * 179.83623 * 18 17 16 35 35 H 1.08003 * 120.00198 * 179.97438 * 19 18 17 36 36 H 1.08002 * 119.99982 * 359.97438 * 20 15 5 37 37 H 1.08000 * 120.11763 * 0.02562 * 22 21 4 38 38 H 1.08004 * 119.73734 * 180.02562 * 23 22 21 39 39 H 1.08001 * 119.66534 * 179.97438 * 24 23 22 40 40 H 1.08000 * 120.11003 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1201 0.0000 4 6 3.5468 0.7697 0.0026 5 6 4.7284 1.7052 0.0066 6 1 5.6480 1.1287 0.1073 7 6 4.6068 2.6630 1.1637 8 1 3.6345 2.8969 1.5713 9 6 5.7371 3.2407 1.7021 10 7 6.9273 2.8793 1.2750 11 14 5.5778 4.5366 3.0380 12 1 5.5821 3.8784 4.3691 13 1 6.7197 5.4818 2.9494 14 1 4.3049 5.2798 2.8573 15 6 4.7601 2.4799 -1.2856 16 6 3.7597 3.3906 -1.5702 17 6 3.7909 4.1041 -2.7538 18 6 4.8180 3.9010 -3.6564 19 6 5.8155 2.9865 -3.3742 20 6 5.7863 2.2758 -2.1889 21 6 3.5946 -0.6943 -0.0046 22 6 4.6296 -1.6315 -0.0094 23 6 4.3363 -2.9659 -0.0154 24 6 3.0169 -3.3979 -0.0172 25 6 1.9805 -2.4905 -0.0136 26 6 2.2560 -1.1269 -0.0060 27 1 -0.3633 -0.0055 1.0277 28 1 -0.3633 -0.8873 -0.5185 29 1 -0.3634 0.8926 -0.5091 30 1 1.8832 2.1356 -0.0004 31 1 7.7225 3.2860 1.6535 32 1 2.9553 3.5466 -0.8666 33 1 3.0115 4.8183 -2.9745 34 1 4.8409 4.4565 -4.5823 35 1 6.6177 2.8275 -4.0796 36 1 6.5657 1.5613 -1.9684 37 1 5.6584 -1.3028 -0.0076 38 1 5.1372 -3.6905 -0.0187 39 1 2.8009 -4.4561 -0.0224 40 1 0.9574 -2.8365 -0.0155 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002548267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:28 Heat of formation + Delta-G solvation = 69.216708 kcal Electronic energy + Delta-G solvation = -22506.196507 eV Core-core repulsion = 19443.350928 eV Total energy + Delta-G solvation = -3062.845579 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.132 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.10477 -39.81850 -37.81243 -35.99048 -33.88026 -32.25318 -31.53450 -31.10016 -29.69463 -28.76952 -26.73326 -24.94689 -23.48427 -23.09695 -22.26461 -21.86379 -20.15784 -18.38041 -17.62870 -17.52299 -16.84827 -16.45566 -16.17423 -16.06401 -15.70014 -15.38023 -14.80585 -14.64767 -14.42664 -14.02270 -13.85879 -13.73585 -13.60770 -13.28981 -13.16868 -13.07374 -12.82718 -12.54337 -12.38491 -12.06900 -11.91859 -11.79473 -11.59573 -11.44042 -11.11724 -10.52310 -10.24369 -9.55221 -9.20054 -8.93139 -8.28408 -8.03466 -6.17940 0.34562 0.77110 0.82343 0.87024 1.39762 1.40182 1.49637 2.00622 2.11978 2.44264 3.10965 3.18090 3.30714 3.92234 4.03517 4.09564 4.24880 4.29350 4.33133 4.37695 4.46767 4.51497 4.58285 4.69242 4.73004 4.77836 4.84625 4.99041 5.01301 5.09362 5.17058 5.29212 5.39684 5.50723 5.59413 5.68808 5.77236 5.81241 5.82392 5.94464 6.04612 6.09835 6.19268 6.38418 6.44563 6.54079 6.66870 6.92235 7.46915 8.98345 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.011801 B = 0.006369 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.205175 B = 4395.424991 C = 5090.092735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.492 5.492 3 C 0.037 3.963 4 C -0.148 4.148 5 C 0.140 3.860 6 H 0.018 0.982 7 C -0.504 4.504 8 H 0.057 0.943 9 C 0.016 3.984 10 N -0.918 5.918 11 Si 0.947 3.053 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.262 1.262 15 C -0.033 4.033 16 C -0.126 4.126 17 C -0.128 4.128 18 C -0.150 4.150 19 C -0.129 4.129 20 C -0.148 4.148 21 C -0.143 4.143 22 C -0.093 4.093 23 C -0.156 4.156 24 C -0.102 4.102 25 C -0.134 4.134 26 C 0.081 3.919 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.171 0.829 31 H 0.259 0.741 32 H 0.115 0.885 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.132 0.868 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.139 0.861 39 H 0.159 0.841 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.064 -6.331 -6.306 15.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.176 5.176 3 C -0.086 4.086 4 C -0.155 4.155 5 C 0.120 3.880 6 H 0.037 0.963 7 C -0.542 4.542 8 H 0.075 0.925 9 C -0.183 4.183 10 N -0.557 5.557 11 Si 0.773 3.227 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.186 1.186 15 C -0.034 4.034 16 C -0.144 4.144 17 C -0.146 4.146 18 C -0.167 4.167 19 C -0.147 4.147 20 C -0.167 4.167 21 C -0.148 4.148 22 C -0.112 4.112 23 C -0.175 4.175 24 C -0.121 4.121 25 C -0.154 4.154 26 C -0.026 4.026 27 H 0.093 0.907 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.188 0.812 31 H 0.068 0.932 32 H 0.133 0.867 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.149 0.851 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.157 0.843 39 H 0.176 0.824 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.264 -6.238 -6.272 15.122 hybrid contribution 0.880 0.904 1.080 1.660 sum -11.384 -5.334 -5.193 13.602 Atomic orbital electron populations 1.22146 0.75020 1.05429 1.03733 1.43920 1.06922 1.03261 1.63487 1.21569 0.89801 0.91191 1.06059 1.20782 0.95060 0.91671 1.07963 1.16151 0.90979 0.90760 0.90088 0.96339 1.21255 0.92787 1.25217 1.14943 0.92484 1.25701 0.95182 0.98651 0.98773 1.70075 0.97913 1.43325 1.44363 0.85723 0.77989 0.79480 0.79555 1.20544 1.21246 1.18605 1.20522 0.93063 0.95399 0.94411 1.21030 0.99147 0.97016 0.97193 1.21377 0.99429 0.99763 0.94050 1.21242 0.95187 0.99695 1.00624 1.21269 0.99605 0.97232 0.96605 1.21094 0.98795 1.01419 0.95371 1.19596 0.93814 0.93644 1.07718 1.20425 0.97410 0.93611 0.99708 1.20834 0.98062 0.94244 1.04407 1.21131 0.91279 1.00238 0.99475 1.20311 1.00889 0.87990 1.06227 1.18566 0.89603 0.89608 1.04772 0.90698 0.88609 0.88653 0.81175 0.93208 0.86728 0.84064 0.83800 0.85052 0.89047 0.88473 0.84301 0.82379 0.83573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.55 11.03 127.77 1.41 2.96 16 2 N -0.49 -16.07 3.18 -539.28 -1.71 -17.78 16 3 C 0.04 1.45 9.82 83.00 0.82 2.27 16 4 C -0.15 -6.87 5.03 -18.63 -0.09 -6.96 16 5 C 0.14 7.29 2.37 -13.03 -0.03 7.26 16 6 H 0.02 1.11 7.27 -2.39 -0.02 1.09 16 7 C -0.50 -27.78 7.54 25.60 0.19 -27.58 16 8 H 0.06 3.05 7.49 -2.91 -0.02 3.03 16 9 C 0.02 0.90 5.45 84.66 0.46 1.36 16 10 N -0.92 -54.89 12.91 21.45 0.28 -54.62 16 11 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 14 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 15 C -0.03 -1.60 4.77 -19.87 -0.09 -1.69 16 16 C -0.13 -5.27 8.49 22.27 0.19 -5.08 16 17 C -0.13 -4.48 10.05 22.27 0.22 -4.25 16 18 C -0.15 -5.01 10.05 22.27 0.22 -4.78 16 19 C -0.13 -4.88 10.05 22.27 0.22 -4.66 16 20 C -0.15 -6.85 9.67 22.27 0.22 -6.64 16 21 C -0.14 -6.20 6.35 -20.20 -0.13 -6.33 16 22 C -0.09 -3.76 10.05 22.23 0.22 -3.54 16 23 C -0.16 -4.90 9.97 22.03 0.22 -4.68 16 24 C -0.10 -2.69 10.01 22.30 0.22 -2.47 16 25 C -0.13 -3.74 9.97 22.37 0.22 -3.52 16 26 C 0.08 2.92 6.81 39.03 0.27 3.18 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.10 1.49 8.10 -2.39 -0.02 1.47 16 29 H 0.09 1.58 8.13 -2.39 -0.02 1.56 16 30 H 0.17 6.05 6.64 -2.91 -0.02 6.03 16 31 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 32 H 0.11 4.58 6.29 -2.91 -0.02 4.57 16 33 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 34 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 35 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 36 H 0.09 4.42 7.96 -2.91 -0.02 4.40 16 37 H 0.10 4.20 8.06 -2.91 -0.02 4.17 16 38 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 39 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 40 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -70.82 339.17 6.38 -64.44 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 1.03 Total: 26.62 kcal Atomic # 6 Polarization: -69.92 SS G_CDS: 4.76 Total: -65.15 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -1.44 Total: -72.40 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -70.82 6.38 -64.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002548267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.655 kcal (2) G-P(sol) polarization free energy of solvation -70.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds