Wall clock time and date at job start Tue Mar 31 2020 02:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46506 * 119.99937 * 2 1 4 4 C 1.50703 * 109.47289 * 84.99851 * 3 2 1 5 5 H 1.07994 * 119.99399 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99789 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00144 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99733 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46632 * 90.00476 * 8 6 4 10 10 H 1.48496 * 109.46690 * 210.00029 * 8 6 4 11 11 H 1.48498 * 109.47171 * 330.00226 * 8 6 4 12 12 S 1.65596 * 120.00234 * 179.97438 * 2 1 3 13 13 O 1.42102 * 106.39988 * 23.54158 * 12 2 1 14 14 O 1.42093 * 106.40335 * 156.45809 * 12 2 1 15 15 N 1.65597 * 107.21801 * 270.00150 * 12 2 1 16 16 C 1.47026 * 125.64906 * 90.02089 * 15 12 2 17 17 C 1.54329 * 107.27067 * 181.02068 * 16 15 12 18 18 C 1.55158 * 102.94309 * 22.19662 * 17 16 15 19 19 C 1.52995 * 111.00529 * 82.60353 * 18 17 16 20 20 C 1.53001 * 111.00366 * 206.42456 * 18 17 16 21 21 N 1.46894 * 109.46849 * 298.54155 * 20 18 17 22 22 C 1.47425 * 125.65080 * 269.71091 * 15 12 2 23 23 H 1.08999 * 109.47196 * 90.00199 * 1 2 3 24 24 H 1.08998 * 109.46736 * 210.00494 * 1 2 3 25 25 H 1.08999 * 109.47053 * 330.00000 * 1 2 3 26 26 H 1.09001 * 109.47060 * 205.00301 * 3 2 1 27 27 H 1.09004 * 109.47073 * 324.99790 * 3 2 1 28 28 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.88372 * 300.44016 * 16 15 12 30 30 H 1.09006 * 109.88227 * 61.45175 * 16 15 12 31 31 H 1.09000 * 110.71735 * 140.55558 * 17 16 15 32 32 H 1.09000 * 110.72258 * 263.65053 * 17 16 15 33 33 H 1.09005 * 109.46699 * 61.45599 * 19 18 17 34 34 H 1.09003 * 109.47289 * 181.45116 * 19 18 17 35 35 H 1.08993 * 109.47746 * 301.45800 * 19 18 17 36 36 H 1.08996 * 109.47225 * 58.53996 * 20 18 17 37 37 H 1.09001 * 109.46627 * 178.54698 * 20 18 17 38 38 H 1.00903 * 111.00204 * 180.02562 * 21 20 18 39 39 H 1.00899 * 111.00427 * 303.95593 * 21 20 18 40 40 H 1.09001 * 110.36977 * 274.75131 * 22 15 12 41 41 H 1.09006 * 110.36192 * 37.07269 * 22 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7658 1.4154 5 1 1.9289 1.1936 2.2331 6 6 3.0006 2.9505 1.6664 7 7 3.5034 3.6470 0.6705 8 14 3.1784 3.5669 3.4208 9 1 4.4331 3.0323 4.0084 10 1 3.2245 5.0511 3.4215 11 1 2.0190 3.1072 4.2268 12 16 2.2931 -1.4341 0.0006 13 8 1.4114 -2.4067 -0.5434 14 8 3.5759 -1.1569 -0.5439 15 7 2.5381 -1.8579 1.5826 16 6 1.6305 -2.6750 2.4013 17 6 2.2559 -2.7846 3.8079 18 6 3.1988 -1.5538 3.8660 19 6 2.4267 -0.2889 4.2460 20 6 4.3586 -1.7967 4.8339 21 7 3.8297 -2.0129 6.1872 22 6 3.7056 -1.4838 2.4014 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 3.1858 1.1178 -0.4344 27 1 1.6502 2.0044 -0.5895 28 1 3.9668 4.4806 0.8471 29 1 0.6548 -2.1935 2.4659 30 1 1.5259 -3.6668 1.9612 31 1 1.4872 -2.7181 4.5779 32 1 2.8205 -3.7116 3.9078 33 1 1.9892 -0.4141 5.2365 34 1 3.1066 0.5631 4.2543 35 1 1.6343 -0.1143 3.5183 36 1 4.9177 -2.6772 4.5174 37 1 5.0179 -0.9287 4.8359 38 1 4.5768 -2.1753 6.8457 39 1 3.2536 -1.2374 6.4785 40 1 4.5207 -2.1905 2.2453 41 1 4.0290 -0.4711 2.1604 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261879694.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:34 Heat of formation + Delta-G solvation = -76.522346 kcal Electronic energy + Delta-G solvation = -23778.094287 eV Core-core repulsion = 20433.523676 eV Total energy + Delta-G solvation = -3344.570611 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.140 amu Computer time = 4.57 seconds Orbital eigenvalues (eV) -39.09143 -36.62267 -35.45908 -35.18309 -34.70559 -32.50047 -30.86173 -29.23216 -27.77484 -26.65561 -25.06303 -24.10278 -22.31918 -21.90165 -18.92932 -18.32808 -17.19218 -16.87059 -16.43518 -15.91303 -15.56757 -15.12902 -14.60412 -14.56140 -13.78592 -13.54678 -13.47598 -13.20730 -13.06995 -12.78029 -12.33377 -12.19890 -12.16030 -11.81394 -11.67918 -11.51181 -11.46722 -11.17954 -11.14452 -11.06425 -10.80267 -10.59822 -10.49774 -10.44798 -10.34221 -10.07345 -9.62050 -8.70637 -8.59338 -8.50210 -8.01694 -6.13153 -4.18852 1.26744 3.17877 3.26060 3.27422 3.53915 4.17611 4.31916 4.39737 4.72388 4.86023 4.97723 5.12565 5.21434 5.40938 5.43798 5.49875 5.59799 5.77247 5.81343 5.86990 5.95886 6.08215 6.12863 6.16936 6.26292 6.28787 6.34296 6.40799 6.52260 6.62439 6.68904 6.82661 7.08378 7.34644 7.37118 7.45339 7.64711 7.85829 8.15140 8.87462 9.46455 10.95215 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.011381 B = 0.010446 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.658219 B = 2679.913524 C = 4452.598624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.996 5.996 3 C 0.243 3.757 4 C -0.539 4.539 5 H 0.072 0.928 6 C 0.065 3.935 7 N -0.890 5.890 8 Si 0.886 3.114 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.271 1.271 12 S 2.800 3.200 13 O -0.998 6.998 14 O -0.975 6.975 15 N -1.013 6.013 16 C 0.122 3.878 17 C -0.101 4.101 18 C -0.069 4.069 19 C -0.138 4.138 20 C 0.075 3.925 21 N -0.848 5.848 22 C 0.134 3.866 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.264 0.736 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.031 0.969 38 H 0.337 0.663 39 H 0.340 0.660 40 H 0.060 0.940 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.158 -9.574 8.481 12.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.838 5.838 3 C 0.121 3.879 4 C -0.579 4.579 5 H 0.090 0.910 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.714 3.286 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.196 1.196 12 S 2.810 3.190 13 O -0.982 6.982 14 O -0.959 6.959 15 N -0.851 5.851 16 C -0.004 4.004 17 C -0.140 4.140 18 C -0.071 4.071 19 C -0.195 4.195 20 C -0.056 4.056 21 N -0.378 5.378 22 C 0.008 3.992 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.078 0.922 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.168 -10.490 7.222 12.919 hybrid contribution 0.541 1.717 1.566 2.386 sum -1.627 -8.773 8.788 12.523 Atomic orbital electron populations 1.21204 0.80198 1.01956 1.00566 1.57704 1.14163 1.23543 1.88428 1.19230 0.92143 0.78921 0.97642 1.21734 1.36230 1.06741 0.93173 0.90998 1.24934 0.95423 0.96595 0.96844 1.69937 1.36880 1.15205 1.30779 0.86709 0.78555 0.78161 0.85202 1.20555 1.21355 1.19573 1.01317 0.73028 0.72555 0.72124 1.93528 1.67427 1.60506 1.76731 1.93570 1.40922 1.85282 1.76174 1.59043 1.30158 1.65364 1.30563 1.21661 0.92831 0.94489 0.91453 1.22514 0.98697 0.97668 0.95097 1.21774 0.95368 0.96025 0.93905 1.21856 1.00990 0.95780 1.00905 1.21711 0.95176 0.99934 0.88774 1.58755 1.26410 1.49083 1.03559 1.22004 0.87089 1.01602 0.88549 0.93805 0.93026 0.90878 0.93211 0.94504 0.92663 0.92336 0.91923 0.90396 0.90952 0.93100 0.92382 0.90746 0.90902 0.95048 0.85089 0.84628 0.92175 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.87 10.31 59.85 0.62 2.49 16 2 N -1.00 -20.77 3.23 -123.04 -0.40 -21.17 16 3 C 0.24 5.97 5.41 -5.19 -0.03 5.94 16 4 C -0.54 -13.51 9.38 -34.44 -0.32 -13.83 16 5 H 0.07 1.69 5.32 -52.49 -0.28 1.41 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -25.00 13.29 55.43 0.74 -24.27 16 8 Si 0.89 19.94 28.68 -169.99 -4.88 15.06 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 12 S 2.80 57.47 6.31 -107.50 -0.68 56.80 16 13 O -1.00 -21.12 16.79 -57.17 -0.96 -22.08 16 14 O -0.98 -23.15 16.27 -57.17 -0.93 -24.08 16 15 N -1.01 -17.49 3.74 -111.28 -0.42 -17.91 16 16 C 0.12 1.72 6.65 -3.06 -0.02 1.70 16 17 C -0.10 -1.24 5.62 -24.89 -0.14 -1.38 16 18 C -0.07 -0.94 0.73 -152.24 -0.11 -1.05 16 19 C -0.14 -2.07 7.60 37.15 0.28 -1.79 16 20 C 0.08 0.88 5.82 -3.83 -0.02 0.86 16 21 N -0.85 -8.49 9.32 -10.37 -0.10 -8.58 16 22 C 0.13 2.20 5.92 -2.41 -0.01 2.18 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.79 7.79 -51.93 -0.40 0.39 16 25 H 0.07 1.24 8.07 -51.93 -0.42 0.83 16 26 H 0.05 1.36 6.92 -51.93 -0.36 1.00 16 27 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 32 H 0.07 0.84 8.04 -51.93 -0.42 0.42 16 33 H 0.05 0.65 6.86 -51.93 -0.36 0.29 16 34 H 0.06 0.97 7.26 -51.93 -0.38 0.59 16 35 H 0.07 1.25 6.21 -51.93 -0.32 0.93 16 36 H 0.07 0.81 8.10 -51.93 -0.42 0.38 16 37 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.34 2.76 9.08 -39.29 -0.36 2.40 16 39 H 0.34 3.36 7.31 -39.29 -0.29 3.07 16 40 H 0.06 0.90 8.01 -51.93 -0.42 0.49 16 41 H 0.09 1.76 8.06 -51.93 -0.42 1.34 16 LS Contribution 335.92 15.07 5.06 5.06 Total: -1.00 -30.66 335.92 -8.91 -39.57 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.50 Total: 4.86 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 0.14 Total: -3.26 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -0.17 Total: -71.93 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -1.89 Total: -46.16 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.88 Total: 15.06 kcal Atomic # 16 Polarization: 57.47 SS G_CDS: -0.68 Total: 56.80 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.66 -8.91 -39.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261879694.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.952 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.57 seconds