Wall clock time and date at job start Tue Mar 31 2020 02:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46506 * 119.99937 * 2 1 4 4 C 1.50703 * 109.47289 * 84.99851 * 3 2 1 5 5 H 1.07994 * 119.99399 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99789 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00144 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99733 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46632 * 90.00476 * 8 6 4 10 10 H 1.48496 * 109.46690 * 210.00029 * 8 6 4 11 11 H 1.48498 * 109.47171 * 330.00226 * 8 6 4 12 12 S 1.65596 * 120.00234 * 179.97438 * 2 1 3 13 13 O 1.42102 * 106.39988 * 23.54158 * 12 2 1 14 14 O 1.42093 * 106.40335 * 156.45809 * 12 2 1 15 15 N 1.65597 * 107.21801 * 270.00150 * 12 2 1 16 16 C 1.47026 * 125.64906 * 90.02089 * 15 12 2 17 17 C 1.54329 * 107.27067 * 181.02068 * 16 15 12 18 18 C 1.55158 * 102.94309 * 22.19662 * 17 16 15 19 19 C 1.52995 * 111.00529 * 82.60353 * 18 17 16 20 20 C 1.53001 * 111.00366 * 206.42456 * 18 17 16 21 21 N 1.46894 * 109.46849 * 298.54155 * 20 18 17 22 22 C 1.47425 * 125.65080 * 269.71091 * 15 12 2 23 23 H 1.08999 * 109.47196 * 90.00199 * 1 2 3 24 24 H 1.08998 * 109.46736 * 210.00494 * 1 2 3 25 25 H 1.08999 * 109.47053 * 330.00000 * 1 2 3 26 26 H 1.09001 * 109.47060 * 205.00301 * 3 2 1 27 27 H 1.09004 * 109.47073 * 324.99790 * 3 2 1 28 28 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.88372 * 300.44016 * 16 15 12 30 30 H 1.09006 * 109.88227 * 61.45175 * 16 15 12 31 31 H 1.09000 * 110.71735 * 140.55558 * 17 16 15 32 32 H 1.09000 * 110.72258 * 263.65053 * 17 16 15 33 33 H 1.09005 * 109.46699 * 61.45599 * 19 18 17 34 34 H 1.09003 * 109.47289 * 181.45116 * 19 18 17 35 35 H 1.08993 * 109.47746 * 301.45800 * 19 18 17 36 36 H 1.08996 * 109.47225 * 58.53996 * 20 18 17 37 37 H 1.09001 * 109.46627 * 178.54698 * 20 18 17 38 38 H 1.00903 * 111.00204 * 180.02562 * 21 20 18 39 39 H 1.00899 * 111.00427 * 303.95593 * 21 20 18 40 40 H 1.09001 * 110.36977 * 274.75131 * 22 15 12 41 41 H 1.09006 * 110.36192 * 37.07269 * 22 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7658 1.4154 5 1 1.9289 1.1936 2.2331 6 6 3.0006 2.9505 1.6664 7 7 3.5034 3.6470 0.6705 8 14 3.1784 3.5669 3.4208 9 1 4.4331 3.0323 4.0084 10 1 3.2245 5.0511 3.4215 11 1 2.0190 3.1072 4.2268 12 16 2.2931 -1.4341 0.0006 13 8 1.4114 -2.4067 -0.5434 14 8 3.5759 -1.1569 -0.5439 15 7 2.5381 -1.8579 1.5826 16 6 1.6305 -2.6750 2.4013 17 6 2.2559 -2.7846 3.8079 18 6 3.1988 -1.5538 3.8660 19 6 2.4267 -0.2889 4.2460 20 6 4.3586 -1.7967 4.8339 21 7 3.8297 -2.0129 6.1872 22 6 3.7056 -1.4838 2.4014 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 3.1858 1.1178 -0.4344 27 1 1.6502 2.0044 -0.5895 28 1 3.9668 4.4806 0.8471 29 1 0.6548 -2.1935 2.4659 30 1 1.5259 -3.6668 1.9612 31 1 1.4872 -2.7181 4.5779 32 1 2.8205 -3.7116 3.9078 33 1 1.9892 -0.4141 5.2365 34 1 3.1066 0.5631 4.2543 35 1 1.6343 -0.1143 3.5183 36 1 4.9177 -2.6772 4.5174 37 1 5.0179 -0.9287 4.8359 38 1 4.5768 -2.1753 6.8457 39 1 3.2536 -1.2374 6.4785 40 1 4.5207 -2.1905 2.2453 41 1 4.0290 -0.4711 2.1604 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261879694.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:31 Heat of formation + Delta-G solvation = -100.869193 kcal Electronic energy + Delta-G solvation = -23779.150045 eV Core-core repulsion = 20433.523676 eV Total energy + Delta-G solvation = -3345.626369 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.140 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.24151 -38.35026 -37.20731 -36.92658 -35.73802 -34.46221 -31.94030 -30.39406 -29.61266 -27.84338 -26.75357 -25.14700 -24.16208 -23.13422 -20.11674 -19.82696 -18.75165 -18.62650 -18.19496 -17.18252 -16.91013 -16.55692 -16.23924 -15.52373 -15.24560 -15.04266 -14.78656 -14.52206 -14.37756 -14.08655 -13.96239 -13.89781 -13.43922 -13.42332 -13.25502 -13.06326 -12.98925 -12.89503 -12.59227 -12.47078 -12.38639 -12.30726 -11.93097 -11.81014 -11.51826 -11.50592 -11.28351 -10.57072 -9.95091 -9.71692 -9.51110 -8.14962 -6.27019 -0.35582 1.39672 1.41556 1.51113 1.98142 2.42033 2.57393 3.17119 3.20526 3.52288 3.73856 3.88033 4.04042 4.08275 4.35137 4.38273 4.41621 4.64027 4.67853 4.75020 4.79557 4.80478 4.81832 4.98351 5.03270 5.07174 5.15380 5.20589 5.26977 5.31087 5.36784 5.43549 5.57002 5.57726 5.80693 5.95170 6.14010 6.27989 6.67688 6.87193 7.42566 8.93949 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.011381 B = 0.010446 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.658219 B = 2679.913524 C = 4452.598624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -1.003 6.003 3 C 0.256 3.744 4 C -0.534 4.534 5 H 0.088 0.912 6 C 0.011 3.989 7 N -0.933 5.933 8 Si 0.947 3.053 9 H -0.273 1.273 10 H -0.293 1.293 11 H -0.251 1.251 12 S 2.812 3.188 13 O -1.003 7.003 14 O -1.015 7.015 15 N -1.012 6.012 16 C 0.111 3.889 17 C -0.087 4.087 18 C -0.062 4.062 19 C -0.136 4.136 20 C 0.081 3.919 21 N -0.844 5.844 22 C 0.127 3.873 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.014 0.986 27 H 0.018 0.982 28 H 0.263 0.737 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.036 0.964 35 H 0.054 0.946 36 H 0.082 0.918 37 H 0.022 0.978 38 H 0.350 0.650 39 H 0.343 0.657 40 H 0.073 0.927 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.158 -11.141 11.317 16.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.844 5.844 3 C 0.133 3.867 4 C -0.573 4.573 5 H 0.106 0.894 6 C -0.188 4.188 7 N -0.573 5.573 8 Si 0.772 3.228 9 H -0.198 1.198 10 H -0.220 1.220 11 H -0.175 1.175 12 S 2.822 3.178 13 O -0.988 6.988 14 O -0.999 6.999 15 N -0.853 5.853 16 C -0.014 4.014 17 C -0.126 4.126 18 C -0.064 4.064 19 C -0.194 4.194 20 C -0.051 4.051 21 N -0.375 5.375 22 C 0.001 3.999 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.032 0.968 27 H 0.036 0.964 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.040 0.960 38 H 0.163 0.837 39 H 0.156 0.844 40 H 0.091 0.909 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.199 -12.086 10.065 16.051 hybrid contribution 0.827 2.135 0.654 2.381 sum -2.371 -9.951 10.720 14.818 Atomic orbital electron populations 1.21441 0.78054 1.03280 1.01800 1.57617 1.15631 1.22166 1.88984 1.18800 0.90609 0.80056 0.97254 1.22035 1.35236 1.06478 0.93592 0.89388 1.25768 0.95244 0.97000 1.00738 1.70086 1.38301 1.15766 1.33143 0.85728 0.79386 0.77012 0.80652 1.19838 1.21990 1.17471 1.00727 0.72067 0.72255 0.72766 1.93510 1.67366 1.60363 1.77523 1.93515 1.42919 1.85769 1.77728 1.58766 1.31157 1.65503 1.29839 1.21990 0.92744 0.94456 0.92171 1.22484 0.98703 0.97313 0.94079 1.21719 0.96236 0.96273 0.92215 1.21819 1.00064 0.95628 1.01848 1.21601 0.94150 1.00014 0.89310 1.58723 1.26864 1.48981 1.02927 1.22125 0.87348 0.99951 0.90500 0.92719 0.90573 0.90622 0.96766 0.96361 0.92856 0.91468 0.90893 0.88582 0.89565 0.90408 0.94482 0.92739 0.89963 0.95990 0.83669 0.84353 0.90924 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.37 10.31 127.77 1.32 4.68 16 2 N -1.00 -42.17 3.23 -543.20 -1.75 -43.92 16 3 C 0.26 13.08 5.41 85.63 0.46 13.54 16 4 C -0.53 -27.12 9.38 25.60 0.24 -26.88 16 5 H 0.09 4.10 5.32 -2.91 -0.02 4.08 16 6 C 0.01 0.60 5.46 84.65 0.46 1.06 16 7 N -0.93 -54.05 13.29 21.45 0.28 -53.76 16 8 Si 0.95 40.86 28.68 68.60 1.97 42.82 16 9 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 10 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 12 S 2.81 115.83 6.31 -56.49 -0.36 115.48 16 13 O -1.00 -41.58 16.79 -128.00 -2.15 -43.73 16 14 O -1.01 -49.85 16.27 -128.00 -2.08 -51.93 16 15 N -1.01 -33.91 3.74 -505.98 -1.89 -35.80 16 16 C 0.11 2.84 6.65 86.73 0.58 3.42 16 17 C -0.09 -1.81 5.62 31.78 0.18 -1.63 16 18 C -0.06 -1.55 0.73 -50.71 -0.04 -1.58 16 19 C -0.14 -3.76 7.60 71.98 0.55 -3.21 16 20 C 0.08 1.66 5.82 86.30 0.50 2.16 16 21 N -0.84 -13.78 9.32 -186.73 -1.74 -15.52 16 22 C 0.13 4.07 5.92 86.93 0.51 4.59 16 23 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.08 2.18 7.79 -2.39 -0.02 2.16 16 25 H 0.07 2.50 8.07 -2.39 -0.02 2.48 16 26 H 0.01 0.83 6.92 -2.39 -0.02 0.81 16 27 H 0.02 0.99 8.11 -2.38 -0.02 0.97 16 28 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.10 1.73 8.04 -2.39 -0.02 1.71 16 32 H 0.09 1.61 8.04 -2.39 -0.02 1.59 16 33 H 0.08 1.70 6.86 -2.38 -0.02 1.68 16 34 H 0.04 1.16 7.26 -2.39 -0.02 1.15 16 35 H 0.05 1.71 6.21 -2.39 -0.01 1.69 16 36 H 0.08 1.56 8.10 -2.39 -0.02 1.54 16 37 H 0.02 0.49 8.14 -2.39 -0.02 0.48 16 38 H 0.35 4.48 9.08 -89.69 -0.81 3.67 16 39 H 0.34 5.45 7.31 -89.69 -0.66 4.79 16 40 H 0.07 2.12 8.01 -2.39 -0.02 2.10 16 41 H 0.06 2.22 8.06 -2.38 -0.02 2.20 16 Total: -1.00 -67.11 335.92 -3.39 -70.50 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -0.43 Total: 19.71 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 4.77 Total: -3.84 kcal Atomic # 7 Polarization: -143.91 SS G_CDS: -5.10 Total: -149.01 kcal Atomic # 8 Polarization: -91.43 SS G_CDS: -4.23 Total: -95.66 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.97 Total: 42.82 kcal Atomic # 16 Polarization: 115.83 SS G_CDS: -0.36 Total: 115.48 kcal Total: -67.11 -3.39 -70.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261879694.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.368 kcal (2) G-P(sol) polarization free energy of solvation -67.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds