Wall clock time and date at job start Tue Mar 31 2020 04:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34257 * 125.74938 * 2 1 4 4 C 1.38045 * 107.41158 * 180.14562 * 3 2 1 5 5 C 1.47436 * 126.41235 * 179.87056 * 4 3 2 6 6 O 1.21602 * 120.00091 * 179.68458 * 5 4 3 7 7 N 1.34773 * 119.99867 * 359.41363 * 5 4 3 8 8 C 1.47067 * 136.05728 * 359.62516 * 7 5 4 9 9 C 1.53762 * 87.88917 * 152.96728 * 8 7 5 10 10 O 1.42902 * 114.39352 * 272.67724 * 9 8 7 11 11 C 1.50697 * 114.26786 * 139.78906 * 9 8 7 12 12 H 1.07994 * 120.00191 * 266.47560 * 11 9 8 13 13 C 1.37873 * 119.99636 * 86.47784 * 11 9 8 14 14 N 1.31513 * 120.00357 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 119.99995 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.46837 * 60.00052 * 15 13 11 17 17 H 1.48497 * 109.47465 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47349 * 300.00223 * 15 13 11 19 19 C 1.47068 * 136.05929 * 179.97438 * 7 5 4 20 20 C 1.41283 * 107.17342 * 359.60743 * 4 3 2 21 21 C 1.50699 * 125.98948 * 180.27875 * 20 4 3 22 22 C 1.53005 * 117.49879 * 188.74576 * 21 20 4 23 23 C 1.53006 * 117.49756 * 120.08583 * 21 20 4 24 24 N 1.30455 * 108.02402 * 0.24029 * 20 4 3 25 25 H 1.08999 * 109.47026 * 270.31426 * 1 2 3 26 26 H 1.08997 * 109.47219 * 30.32080 * 1 2 3 27 27 H 1.09006 * 109.47098 * 150.31589 * 1 2 3 28 28 H 1.07999 * 126.29734 * 359.97438 * 3 2 1 29 29 H 1.09005 * 113.47067 * 267.69517 * 8 7 5 30 30 H 1.09002 * 113.47148 * 38.14061 * 8 7 5 31 31 H 0.96691 * 114.00062 * 273.58236 * 10 9 8 32 32 H 0.97005 * 120.00100 * 180.02562 * 14 13 11 33 33 H 1.09003 * 113.46512 * 321.86799 * 19 7 5 34 34 H 1.09004 * 113.46816 * 92.23902 * 19 7 5 35 35 H 1.08999 * 115.55246 * 334.41404 * 21 20 4 36 36 H 1.09000 * 117.49601 * 359.97438 * 22 21 20 37 37 H 1.08995 * 117.49608 * 145.02098 * 22 21 20 38 38 H 1.08996 * 117.49703 * 214.97692 * 23 21 20 39 39 H 1.09003 * 117.49982 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2494 1.0896 0.0000 4 6 3.5598 0.6553 -0.0033 5 6 4.7638 1.5062 -0.0072 6 8 5.8681 0.9971 -0.0042 7 7 4.6404 2.8482 -0.0197 8 6 3.5273 3.8092 -0.0386 9 6 4.4578 4.8141 0.6604 10 8 4.4624 4.7211 2.0864 11 6 4.3325 6.2286 0.1561 12 1 4.9887 6.5837 -0.6246 13 6 3.3799 7.0694 0.6915 14 7 2.5811 6.6372 1.6426 15 14 3.2249 8.8231 0.0669 16 1 2.9129 8.8057 -1.3849 17 1 2.1345 9.5151 0.7998 18 1 4.5047 9.5429 0.2895 19 6 5.5598 3.9961 -0.0268 20 6 3.5311 -0.7572 0.0039 21 6 4.7322 -1.6674 0.0093 22 6 4.4853 -3.1642 -0.1896 23 6 4.8836 -2.6302 1.1887 24 7 2.2826 -1.1356 0.0058 25 1 -0.3633 0.0056 1.0276 26 1 -0.3633 0.8871 -0.5188 27 1 -0.3633 -0.8929 -0.5089 28 1 1.9165 2.1170 -0.0004 29 1 3.2346 4.1149 -1.0431 30 1 2.6789 3.5028 0.5734 31 1 3.7671 5.2374 2.5164 32 1 1.9107 7.2287 2.0190 33 1 6.4428 3.8489 0.5952 34 1 5.8042 4.3504 -1.0282 35 1 5.6429 -1.2466 -0.4170 36 1 3.4540 -3.4906 -0.3239 37 1 5.2337 -3.7281 -0.7463 38 1 5.8939 -2.8432 1.5380 39 1 4.1147 -2.6051 1.9609 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589848222.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:06 Heat of formation + Delta-G solvation = 64.155323 kcal Electronic energy + Delta-G solvation = -23333.760841 eV Core-core repulsion = 19859.846521 eV Total energy + Delta-G solvation = -3473.914320 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.27722 -39.29161 -37.25520 -36.83013 -34.00465 -32.93477 -32.21886 -30.57132 -28.37947 -27.17660 -25.42212 -25.16489 -23.06451 -22.31876 -21.95035 -20.05471 -19.19606 -18.50727 -17.53270 -16.60238 -15.96441 -15.62595 -15.34625 -15.21551 -14.86167 -14.51540 -14.42422 -14.14264 -13.22296 -13.19716 -12.99560 -12.70801 -12.48798 -12.22271 -11.92174 -11.76407 -11.57696 -11.45298 -11.07773 -10.98948 -10.89605 -10.69174 -10.51148 -10.28033 -10.24418 -9.60379 -9.13514 -9.06294 -8.79433 -8.47421 -8.36339 -7.76449 -6.43728 -4.54015 1.73531 2.30608 2.42264 3.13356 3.19475 3.22029 3.66564 3.89787 4.14286 4.17224 4.38368 4.64390 4.79452 4.89113 5.02023 5.05083 5.15044 5.24011 5.26486 5.35791 5.61864 5.70312 5.72237 5.82496 5.90009 5.92681 6.22085 6.22658 6.38201 6.40097 6.46769 6.57857 6.63582 6.74023 6.94531 7.09624 7.59665 7.72830 7.78347 8.49161 8.58878 8.92687 9.17719 9.47582 10.62670 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023274 B = 0.004264 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.783975 B = 6565.306642 C = 7358.369698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.367 5.367 3 C 0.098 3.902 4 C -0.268 4.268 5 C 0.615 3.385 6 O -0.563 6.563 7 N -0.633 5.633 8 C 0.067 3.933 9 C 0.241 3.759 10 O -0.570 6.570 11 C -0.533 4.533 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.900 5.900 15 Si 0.909 3.091 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.110 3.890 20 C 0.159 3.841 21 C -0.076 4.076 22 C -0.171 4.171 23 C -0.160 4.160 24 N -0.307 5.307 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.190 0.810 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.393 0.607 32 H 0.274 0.726 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.139 0.861 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.247 -10.612 -3.291 12.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.146 5.146 3 C -0.052 4.052 4 C -0.282 4.282 5 C 0.405 3.595 6 O -0.444 6.444 7 N -0.366 5.366 8 C -0.056 4.056 9 C 0.199 3.801 10 O -0.382 6.382 11 C -0.571 4.571 12 H 0.091 0.909 13 C -0.130 4.130 14 N -0.540 5.540 15 Si 0.735 3.265 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.012 4.012 20 C -0.008 4.008 21 C -0.096 4.096 22 C -0.209 4.209 23 C -0.198 4.198 24 N -0.128 5.128 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.206 0.794 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.249 0.751 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.157 0.843 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.306 -12.410 -3.268 13.887 hybrid contribution -0.490 2.126 -0.199 2.191 sum -5.796 -10.284 -3.466 12.303 Atomic orbital electron populations 1.21940 0.73774 1.04704 1.03730 1.48221 1.06856 1.03809 1.55675 1.23650 0.90596 0.93972 0.96992 1.20216 0.92854 0.93365 1.21806 1.16648 0.87261 0.79523 0.76039 1.90659 1.27108 1.72923 1.53682 1.49485 1.13145 1.02754 1.71227 1.24348 0.92271 0.88029 1.00999 1.19565 0.89015 0.91193 0.80311 1.86066 1.59469 1.74364 1.18340 1.21424 1.18346 0.95957 1.21409 0.90923 1.25066 0.94282 0.99403 0.94215 1.69256 1.20951 1.37197 1.26636 0.86375 0.78062 0.83006 0.79008 1.19875 1.21016 1.19788 1.23280 0.95796 0.82161 1.00004 1.21368 0.91876 0.91789 0.95783 1.20492 0.95494 0.88810 1.04768 1.23003 1.02873 0.95245 0.99730 1.22948 1.02842 1.02463 0.91577 1.77002 1.01145 1.07477 1.27204 0.90415 0.89056 0.89151 0.79358 0.90054 0.91980 0.75070 0.91551 0.91467 0.89755 0.84342 0.88328 0.88472 0.88162 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.89 11.44 59.85 0.68 1.57 16 2 N -0.37 -5.27 3.98 -67.59 -0.27 -5.54 16 3 C 0.10 1.57 10.66 -16.56 -0.18 1.40 16 4 C -0.27 -5.08 6.13 -105.07 -0.64 -5.72 16 5 C 0.61 13.34 8.07 -12.52 -0.10 13.24 16 6 O -0.56 -13.30 15.77 5.28 0.08 -13.22 16 7 N -0.63 -13.59 3.69 -186.33 -0.69 -14.27 16 8 C 0.07 1.38 6.58 -8.37 -0.06 1.32 16 9 C 0.24 5.66 1.58 -91.13 -0.14 5.52 16 10 O -0.57 -14.55 13.55 -35.23 -0.48 -15.02 16 11 C -0.53 -12.96 8.70 -34.44 -0.30 -13.26 16 12 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 13 C 0.07 1.75 5.39 -17.82 -0.10 1.65 16 14 N -0.90 -21.97 11.01 55.43 0.61 -21.36 16 15 Si 0.91 18.83 29.54 -169.99 -5.02 13.81 16 16 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 17 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 19 C 0.11 2.39 8.02 -8.52 -0.07 2.33 16 20 C 0.16 2.80 6.79 -82.02 -0.56 2.24 16 21 C -0.08 -1.19 5.65 -91.77 -0.52 -1.71 16 22 C -0.17 -2.13 10.14 -26.69 -0.27 -2.40 16 23 C -0.16 -2.12 10.24 -26.69 -0.27 -2.39 16 24 N -0.31 -5.03 12.08 33.89 0.41 -4.62 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.19 2.76 5.15 -52.49 -0.27 2.49 16 29 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 30 H 0.06 1.24 6.11 -51.93 -0.32 0.92 16 31 H 0.39 10.07 6.32 45.56 0.29 10.35 16 32 H 0.27 6.38 8.31 -40.82 -0.34 6.05 16 33 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 34 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 35 H 0.14 2.37 6.73 -51.93 -0.35 2.02 16 36 H 0.10 1.24 7.90 -51.93 -0.41 0.83 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 331.85 15.07 5.00 5.00 Total: -1.00 -29.92 331.85 -7.27 -37.19 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -4.40 Total: 14.26 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -2.52 Total: 3.78 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.06 Total: -45.79 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.39 Total: -28.24 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.92 -7.27 -37.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589848222.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.346 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds