Wall clock time and date at job start Tue Mar 31 2020 03:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3 5 5 S 1.65601 * 119.99880 * 214.99911 * 4 2 1 6 6 O 1.42100 * 106.40132 * 178.54238 * 5 4 2 7 7 O 1.42104 * 106.40078 * 311.45711 * 5 4 2 8 8 N 1.65592 * 107.21983 * 64.99772 * 5 4 2 9 9 C 1.47082 * 120.88457 * 269.72362 * 8 5 4 10 10 C 1.53690 * 108.27866 * 128.75147 * 9 8 5 11 11 N 1.46902 * 109.25637 * 54.08757 * 10 9 8 12 12 C 1.46897 * 111.00436 * 172.60868 * 11 10 9 13 13 C 1.50710 * 109.46717 * 294.30092 * 12 11 10 14 14 H 1.07996 * 119.99618 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99925 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99963 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99693 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47299 * 90.00522 * 17 15 13 19 19 H 1.48504 * 109.46666 * 210.00067 * 17 15 13 20 20 H 1.48495 * 109.47354 * 329.99526 * 17 15 13 21 21 C 1.46898 * 111.26694 * 296.75286 * 11 10 9 22 22 C 1.47080 * 120.88001 * 89.99961 * 8 5 4 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 29 29 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 30 30 H 0.96996 * 119.99859 * 34.99535 * 4 2 1 31 31 H 1.09005 * 109.62905 * 248.52780 * 9 8 5 32 32 H 1.08999 * 109.62386 * 9.10061 * 9 8 5 33 33 H 1.08993 * 109.65471 * 294.08184 * 10 9 8 34 34 H 1.09006 * 109.41988 * 173.94763 * 10 9 8 35 35 H 1.08999 * 109.47163 * 54.29102 * 12 11 10 36 36 H 1.08995 * 109.47407 * 174.29968 * 12 11 10 37 37 H 0.96994 * 119.99701 * 180.02562 * 16 15 13 38 38 H 1.08996 * 109.49875 * 303.14707 * 21 11 10 39 39 H 1.09000 * 109.51963 * 183.07444 * 21 11 10 40 40 H 1.08996 * 109.63286 * 350.90109 * 22 8 5 41 41 H 1.09004 * 109.62753 * 111.47788 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 3.4019 -1.5975 -1.1219 6 8 3.5856 -2.1560 -2.4155 7 8 4.3776 -0.7889 -0.4788 8 7 3.1015 -2.8674 -0.1025 9 6 3.3702 -2.7580 1.3394 10 6 2.1076 -3.1941 2.0995 11 7 1.7049 -4.5311 1.6431 12 6 0.6079 -5.0596 2.4647 13 6 1.0981 -5.2857 3.8718 14 1 2.1222 -5.0596 4.1296 15 6 0.2391 -5.7810 4.8299 16 7 0.6670 -5.9787 6.0576 17 14 -1.5324 -6.1712 4.3839 18 1 -1.6286 -7.5804 3.9254 19 1 -2.3968 -5.9784 5.5759 20 1 -1.9801 -5.2650 3.2960 21 6 1.3391 -4.5207 0.2204 22 6 2.5645 -4.1368 -0.6159 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.5312 -0.6166 -2.0317 31 1 4.2046 -3.4066 1.6066 32 1 3.6112 -1.7248 1.5895 33 1 1.3014 -2.4861 1.9076 34 1 2.3199 -3.2233 3.1683 35 1 -0.2143 -4.3441 2.4770 36 1 0.2616 -6.0039 2.0445 37 1 0.0628 -6.3275 6.7315 38 1 0.5436 -3.7942 0.0546 39 1 0.9938 -5.5117 -0.0741 40 1 2.2726 -4.0157 -1.6591 41 1 3.3229 -4.9154 -0.5330 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601535639.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:18 Heat of formation + Delta-G solvation = -70.353902 kcal Electronic energy + Delta-G solvation = -23038.929270 eV Core-core repulsion = 19694.626143 eV Total energy + Delta-G solvation = -3344.303127 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.51477 -37.45006 -36.79364 -35.84780 -34.52793 -32.34656 -30.88404 -30.67222 -28.41755 -27.35899 -25.20988 -23.47323 -21.67882 -21.51891 -20.43519 -19.08025 -18.06486 -17.35791 -16.86007 -16.36787 -15.39643 -14.79415 -14.64272 -14.52200 -14.33558 -14.27329 -13.82872 -13.65157 -13.40997 -13.03373 -12.59714 -12.47676 -12.41870 -12.20303 -12.11609 -11.89840 -11.72105 -11.61969 -11.53996 -11.18433 -11.11958 -10.93242 -10.84668 -10.61382 -10.30882 -9.96873 -9.72294 -9.39297 -8.94241 -8.63468 -7.47837 -6.11702 -4.09732 0.57969 2.81857 3.22782 3.30714 3.31232 3.51580 4.32135 4.35421 4.53488 4.59564 4.77293 4.87951 4.95155 5.18742 5.20005 5.30834 5.41493 5.42714 5.52375 5.59851 5.61623 5.62426 5.70675 5.88757 5.89838 6.03567 6.08940 6.11472 6.23452 6.36894 6.39673 6.57548 6.77152 6.86375 6.92138 7.50335 7.79364 7.93514 8.57440 8.96295 9.49655 11.01174 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022085 B = 0.004821 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.539201 B = 5807.099530 C = 6207.829089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.146 3.854 3 C -0.171 4.171 4 N -1.125 6.125 5 S 2.786 3.214 6 O -0.984 6.984 7 O -0.977 6.977 8 N -1.004 6.004 9 C 0.123 3.877 10 C 0.051 3.949 11 N -0.524 5.524 12 C 0.163 3.837 13 C -0.512 4.512 14 H 0.082 0.918 15 C 0.070 3.930 16 N -0.898 5.898 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.269 1.269 21 C 0.039 3.961 22 C 0.131 3.869 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.413 0.587 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.025 0.975 34 H 0.102 0.898 35 H -0.012 1.012 36 H 0.025 0.975 37 H 0.264 0.736 38 H 0.026 0.974 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.092 11.653 -14.023 18.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.040 3.960 3 C -0.230 4.230 4 N -0.885 5.885 5 S 2.794 3.206 6 O -0.968 6.968 7 O -0.960 6.960 8 N -0.846 5.846 9 C -0.002 4.002 10 C -0.079 4.079 11 N -0.248 5.248 12 C 0.037 3.963 13 C -0.550 4.550 14 H 0.100 0.900 15 C -0.132 4.132 16 N -0.537 5.537 17 Si 0.702 3.298 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.194 1.194 21 C -0.091 4.091 22 C 0.005 3.995 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.246 0.754 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.043 0.957 34 H 0.120 0.880 35 H 0.006 0.994 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.186 11.449 -14.062 18.172 hybrid contribution -2.390 0.133 -0.322 2.415 sum -1.204 11.583 -14.383 18.506 Atomic orbital electron populations 1.22078 0.94068 1.02840 1.02619 1.20733 0.95394 0.93335 0.86584 1.22328 1.02714 0.95724 1.02275 1.56152 1.47851 1.65873 1.18600 1.01866 0.73441 0.72657 0.72682 1.93598 1.85319 1.78500 1.39401 1.93603 1.57392 1.68114 1.76924 1.58040 1.80197 1.26843 1.19537 1.21789 0.99129 1.01610 0.77689 1.22463 0.94727 0.89554 1.01133 1.61794 1.40323 1.22189 1.00524 1.20176 0.88107 0.94041 0.93980 1.21018 0.99533 1.43236 0.91221 0.90015 1.24895 0.98265 0.95191 0.94886 1.69888 1.35883 1.45585 1.02334 0.86874 0.85542 0.79222 0.78131 1.20146 1.21217 1.19404 1.22439 0.95089 1.00735 0.90825 1.21514 0.96453 0.85016 0.96513 0.91867 0.91117 0.92152 0.89723 0.91181 0.92305 0.91441 0.75421 0.90070 0.89786 0.95703 0.88031 0.99430 0.95696 0.92604 0.95551 0.90201 0.89883 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.44 37.16 0.35 -0.99 16 2 C 0.15 1.44 3.41 -67.93 -0.23 1.20 16 3 C -0.17 -1.56 9.52 37.16 0.35 -1.21 16 4 N -1.13 -11.40 5.53 -4.89 -0.03 -11.43 16 5 S 2.79 36.78 6.06 -107.50 -0.65 36.13 16 6 O -0.98 -15.17 16.92 -57.17 -0.97 -16.14 16 7 O -0.98 -15.18 16.17 -57.17 -0.92 -16.11 16 8 N -1.00 -13.65 3.38 -112.97 -0.38 -14.03 16 9 C 0.12 1.77 5.97 -3.37 -0.02 1.75 16 10 C 0.05 0.87 5.47 -3.46 -0.02 0.85 16 11 N -0.52 -10.00 4.62 -235.47 -1.09 -11.09 16 12 C 0.16 3.70 3.79 -4.97 -0.02 3.68 16 13 C -0.51 -13.78 8.96 -34.43 -0.31 -14.09 16 14 H 0.08 2.39 7.37 -52.49 -0.39 2.00 16 15 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 16 N -0.90 -26.62 13.96 55.43 0.77 -25.84 16 17 Si 0.87 20.69 27.47 -169.99 -4.67 16.02 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 21 C 0.04 0.60 5.62 -3.70 -0.02 0.58 16 22 C 0.13 1.75 6.53 -3.60 -0.02 1.73 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.90 6.43 -51.93 -0.33 0.56 16 27 H 0.07 0.75 7.64 -51.93 -0.40 0.35 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.41 3.36 8.84 -34.47 -0.30 3.06 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.08 1.08 6.67 -51.93 -0.35 0.73 16 33 H 0.02 0.40 7.75 -51.93 -0.40 0.00 16 34 H 0.10 1.95 6.67 -51.93 -0.35 1.60 16 35 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 36 H 0.03 0.57 7.40 -51.93 -0.38 0.19 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 1.17 7.99 -51.93 -0.41 0.75 16 40 H 0.08 0.97 7.22 -51.93 -0.37 0.60 16 41 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 333.63 15.07 5.03 5.03 Total: -1.00 -32.61 333.63 -9.56 -42.17 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.61 Total: -0.06 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -0.04 Total: -4.65 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -0.72 Total: -62.39 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -1.89 Total: -32.25 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Atomic # 16 Polarization: 36.78 SS G_CDS: -0.65 Total: 36.13 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.61 -9.56 -42.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601535639.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.186 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds