Wall clock time and date at job start Tue Mar 31 2020 03:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3 5 5 S 1.65601 * 119.99880 * 214.99911 * 4 2 1 6 6 O 1.42100 * 106.40132 * 178.54238 * 5 4 2 7 7 O 1.42104 * 106.40078 * 311.45711 * 5 4 2 8 8 N 1.65592 * 107.21983 * 64.99772 * 5 4 2 9 9 C 1.47082 * 120.88457 * 269.72362 * 8 5 4 10 10 C 1.53690 * 108.27866 * 128.75147 * 9 8 5 11 11 N 1.46902 * 109.25637 * 54.08757 * 10 9 8 12 12 C 1.46897 * 111.00436 * 172.60868 * 11 10 9 13 13 C 1.50710 * 109.46717 * 294.30092 * 12 11 10 14 14 H 1.07996 * 119.99618 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99925 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99963 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99693 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47299 * 90.00522 * 17 15 13 19 19 H 1.48504 * 109.46666 * 210.00067 * 17 15 13 20 20 H 1.48495 * 109.47354 * 329.99526 * 17 15 13 21 21 C 1.46898 * 111.26694 * 296.75286 * 11 10 9 22 22 C 1.47080 * 120.88001 * 89.99961 * 8 5 4 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 29 29 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 30 30 H 0.96996 * 119.99859 * 34.99535 * 4 2 1 31 31 H 1.09005 * 109.62905 * 248.52780 * 9 8 5 32 32 H 1.08999 * 109.62386 * 9.10061 * 9 8 5 33 33 H 1.08993 * 109.65471 * 294.08184 * 10 9 8 34 34 H 1.09006 * 109.41988 * 173.94763 * 10 9 8 35 35 H 1.08999 * 109.47163 * 54.29102 * 12 11 10 36 36 H 1.08995 * 109.47407 * 174.29968 * 12 11 10 37 37 H 0.96994 * 119.99701 * 180.02562 * 16 15 13 38 38 H 1.08996 * 109.49875 * 303.14707 * 21 11 10 39 39 H 1.09000 * 109.51963 * 183.07444 * 21 11 10 40 40 H 1.08996 * 109.63286 * 350.90109 * 22 8 5 41 41 H 1.09004 * 109.62753 * 111.47788 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 3.4019 -1.5975 -1.1219 6 8 3.5856 -2.1560 -2.4155 7 8 4.3776 -0.7889 -0.4788 8 7 3.1015 -2.8674 -0.1025 9 6 3.3702 -2.7580 1.3394 10 6 2.1076 -3.1941 2.0995 11 7 1.7049 -4.5311 1.6431 12 6 0.6079 -5.0596 2.4647 13 6 1.0981 -5.2857 3.8718 14 1 2.1222 -5.0596 4.1296 15 6 0.2391 -5.7810 4.8299 16 7 0.6670 -5.9787 6.0576 17 14 -1.5324 -6.1712 4.3839 18 1 -1.6286 -7.5804 3.9254 19 1 -2.3968 -5.9784 5.5759 20 1 -1.9801 -5.2650 3.2960 21 6 1.3391 -4.5207 0.2204 22 6 2.5645 -4.1368 -0.6159 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.5312 -0.6166 -2.0317 31 1 4.2046 -3.4066 1.6066 32 1 3.6112 -1.7248 1.5895 33 1 1.3014 -2.4861 1.9076 34 1 2.3199 -3.2233 3.1683 35 1 -0.2143 -4.3441 2.4770 36 1 0.2616 -6.0039 2.0445 37 1 0.0628 -6.3275 6.7315 38 1 0.5436 -3.7942 0.0546 39 1 0.9938 -5.5117 -0.0741 40 1 2.2726 -4.0157 -1.6591 41 1 3.3229 -4.9154 -0.5330 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601535639.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:17 Heat of formation + Delta-G solvation = -96.969131 kcal Electronic energy + Delta-G solvation = -23040.083393 eV Core-core repulsion = 19694.626143 eV Total energy + Delta-G solvation = -3345.457250 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.82658 -38.52873 -37.66018 -37.00054 -36.02075 -34.30683 -32.09842 -31.49152 -30.16407 -28.03702 -26.75478 -24.72966 -23.21583 -22.45606 -21.71732 -20.18230 -19.17126 -18.87553 -18.44509 -17.35059 -16.56026 -16.39551 -15.99073 -15.83020 -15.41680 -15.34797 -15.23472 -14.89555 -14.50348 -14.31556 -13.92862 -13.75456 -13.56796 -13.35943 -13.24772 -13.04755 -12.93253 -12.67362 -12.55094 -12.50730 -12.35398 -12.28391 -12.19036 -11.86403 -11.82975 -11.62664 -11.38557 -10.74910 -10.58344 -10.14634 -8.96687 -8.24781 -6.27904 -0.48166 1.38032 1.38372 1.48565 1.79899 2.36858 2.49723 3.08334 3.20758 3.24679 3.62368 3.82491 4.10008 4.14275 4.18448 4.25046 4.30961 4.35585 4.45700 4.49501 4.74085 4.79260 4.82600 4.87789 4.93173 4.96307 5.02256 5.04177 5.11653 5.18603 5.24323 5.35179 5.39495 5.50299 5.57113 6.01945 6.12933 6.38243 6.68241 6.79364 7.35886 8.91534 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022085 B = 0.004821 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.539201 B = 5807.099530 C = 6207.829089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.140 3.860 3 C -0.171 4.171 4 N -1.112 6.112 5 S 2.804 3.196 6 O -1.003 7.003 7 O -1.001 7.001 8 N -1.005 6.005 9 C 0.132 3.868 10 C 0.055 3.945 11 N -0.542 5.542 12 C 0.173 3.827 13 C -0.514 4.514 14 H 0.041 0.959 15 C 0.008 3.992 16 N -0.948 5.948 17 Si 0.946 3.054 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.249 1.249 21 C 0.039 3.961 22 C 0.132 3.868 23 H 0.054 0.946 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.424 0.576 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.037 0.963 34 H 0.069 0.931 35 H -0.010 1.010 36 H 0.030 0.970 37 H 0.265 0.735 38 H 0.039 0.961 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.873 12.455 -16.194 20.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.033 3.967 3 C -0.230 4.230 4 N -0.875 5.875 5 S 2.812 3.188 6 O -0.988 6.988 7 O -0.985 6.985 8 N -0.846 5.846 9 C 0.006 3.994 10 C -0.074 4.074 11 N -0.267 5.267 12 C 0.046 3.954 13 C -0.552 4.552 14 H 0.059 0.941 15 C -0.189 4.189 16 N -0.589 5.589 17 Si 0.770 3.230 18 H -0.193 1.193 19 H -0.212 1.212 20 H -0.173 1.173 21 C -0.090 4.090 22 C 0.006 3.994 23 H 0.073 0.927 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.260 0.740 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.008 0.992 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.107 0.893 40 H 0.125 0.875 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.584 12.260 -16.276 20.385 hybrid contribution -1.752 -0.061 0.354 1.788 sum -2.335 12.199 -15.922 20.194 Atomic orbital electron populations 1.22050 0.92718 1.02613 1.03804 1.20875 0.96427 0.93510 0.85851 1.22322 1.01516 0.95504 1.03628 1.55842 1.47108 1.65102 1.19495 1.01193 0.73549 0.72281 0.71791 1.93568 1.85919 1.78999 1.40273 1.93575 1.58953 1.68614 1.77311 1.58008 1.80316 1.27330 1.18917 1.21631 0.97404 1.02284 0.78056 1.22369 0.96275 0.89109 0.99684 1.61675 1.39266 1.23409 1.02342 1.19923 0.88980 0.94451 0.92044 1.21275 0.97854 1.42323 0.93771 0.94111 1.25816 1.03288 0.95173 0.94600 1.70051 1.37787 1.47328 1.03751 0.85742 0.79413 0.79572 0.78314 1.19305 1.21161 1.17254 1.22537 0.96341 1.01822 0.88318 1.21571 0.95635 0.84837 0.97324 0.92733 0.90446 0.90531 0.90728 0.93010 0.90972 0.90175 0.73951 0.90858 0.88208 0.94466 0.91229 0.99241 0.95229 0.92564 0.94301 0.89269 0.87504 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.44 71.98 0.68 -1.49 16 2 C 0.14 2.43 3.41 44.99 0.15 2.58 16 3 C -0.17 -2.74 9.52 71.98 0.69 -2.06 16 4 N -1.11 -19.87 5.53 -169.39 -0.94 -20.81 16 5 S 2.80 69.15 6.06 -56.49 -0.34 68.80 16 6 O -1.00 -28.90 16.92 -128.00 -2.17 -31.06 16 7 O -1.00 -30.00 16.17 -128.00 -2.07 -32.07 16 8 N -1.01 -25.69 3.38 -511.32 -1.73 -27.42 16 9 C 0.13 3.73 5.97 86.50 0.52 4.25 16 10 C 0.06 1.88 5.47 86.54 0.47 2.35 16 11 N -0.54 -20.29 4.62 -898.88 -4.15 -24.44 16 12 C 0.17 7.69 3.79 85.56 0.32 8.02 16 13 C -0.51 -28.27 8.96 25.60 0.23 -28.04 16 14 H 0.04 2.51 7.37 -2.91 -0.02 2.49 16 15 C 0.01 0.48 5.47 84.65 0.46 0.94 16 16 N -0.95 -57.79 13.96 21.45 0.30 -57.49 16 17 Si 0.95 42.26 27.47 68.60 1.88 44.14 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.25 -10.21 6.54 99.48 0.65 -9.56 16 21 C 0.04 1.11 5.62 86.39 0.49 1.60 16 22 C 0.13 3.24 6.53 86.35 0.56 3.80 16 23 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 1.45 6.43 -2.39 -0.02 1.44 16 27 H 0.05 1.03 7.64 -2.39 -0.02 1.01 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.42 5.67 8.84 -96.75 -0.85 4.81 16 31 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 32 H 0.10 2.50 6.67 -2.39 -0.02 2.49 16 33 H 0.04 1.16 7.75 -2.39 -0.02 1.14 16 34 H 0.07 2.80 6.67 -2.38 -0.02 2.78 16 35 H -0.01 -0.44 7.18 -2.39 -0.02 -0.46 16 36 H 0.03 1.29 7.40 -2.39 -0.02 1.28 16 37 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 38 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 2.36 7.99 -2.39 -0.02 2.34 16 40 H 0.11 2.16 7.22 -2.39 -0.02 2.14 16 41 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -70.66 333.63 -4.53 -75.19 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.11 Total: 13.21 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 4.57 Total: -8.06 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -6.52 Total: -130.16 kcal Atomic # 8 Polarization: -58.90 SS G_CDS: -4.23 Total: -63.13 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.88 Total: 44.14 kcal Atomic # 16 Polarization: 69.15 SS G_CDS: -0.34 Total: 68.80 kcal Total: -70.66 -4.53 -75.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601535639.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.783 kcal (2) G-P(sol) polarization free energy of solvation -70.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds