Wall clock time and date at job start Tue Mar 31 2020 03:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46979 * 2 1 4 4 C 1.46502 * 119.99465 * 274.33048 * 3 2 1 5 5 C 1.50693 * 109.47230 * 280.39121 * 4 3 2 6 6 H 1.07999 * 120.00424 * 3.96098 * 5 4 3 7 7 C 1.37879 * 119.99862 * 183.95714 * 5 4 3 8 8 N 1.31514 * 120.00326 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00056 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47286 * 59.99440 * 9 7 5 11 11 H 1.48492 * 109.47293 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46833 * 299.99971 * 9 7 5 13 13 S 1.65598 * 119.99988 * 94.33565 * 3 2 1 14 14 O 1.42097 * 106.40248 * 330.37612 * 13 3 2 15 15 O 1.42107 * 106.39792 * 197.45722 * 13 3 2 16 16 N 1.65598 * 107.21879 * 83.91690 * 13 3 2 17 17 C 1.46502 * 119.99915 * 64.64258 * 16 13 3 18 18 C 1.53004 * 109.46770 * 164.37837 * 17 16 13 19 19 H 1.08995 * 112.95676 * 53.35749 * 18 17 16 20 20 C 1.53943 * 113.75554 * 184.99777 * 18 17 16 21 21 C 1.53931 * 86.33757 * 138.14862 * 20 18 17 22 22 N 1.47955 * 113.85905 * 281.60604 * 18 17 16 23 23 C 1.46900 * 110.99942 * 108.09251 * 22 18 17 24 24 H 1.08997 * 109.47180 * 185.08574 * 1 2 3 25 25 H 1.08994 * 109.47468 * 305.08681 * 1 2 3 26 26 H 1.09007 * 109.46842 * 65.09046 * 1 2 3 27 27 H 1.08994 * 109.47296 * 239.99810 * 2 1 3 28 28 H 1.08999 * 109.46913 * 119.99406 * 2 1 3 29 29 H 1.08997 * 109.47322 * 40.40235 * 4 3 2 30 30 H 1.09000 * 109.46486 * 160.39511 * 4 3 2 31 31 H 0.96996 * 120.00184 * 179.97438 * 8 7 5 32 32 H 0.96995 * 119.99987 * 244.63518 * 16 13 3 33 33 H 1.08998 * 109.47517 * 44.37734 * 17 16 13 34 34 H 1.08999 * 109.46722 * 284.37489 * 17 16 13 35 35 H 1.08998 * 113.73535 * 23.79251 * 20 18 17 36 36 H 1.08998 * 113.82797 * 252.52054 * 20 18 17 37 37 H 1.09001 * 113.76378 * 90.59582 * 21 20 18 38 38 H 1.09001 * 113.76058 * 221.95719 * 21 20 18 39 39 H 1.08999 * 109.47520 * 180.88839 * 23 22 18 40 40 H 1.09000 * 109.46808 * 300.88247 * 23 22 18 41 41 H 1.09000 * 109.47479 * 60.87981 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1721 2.1037 -1.2652 5 6 3.4555 1.6810 -1.9323 6 1 4.0610 0.9017 -1.4935 7 6 3.8568 2.2890 -3.1029 8 7 3.1193 3.2376 -3.6375 9 14 5.4474 1.7645 -3.9302 10 1 5.3706 0.3239 -4.2822 11 1 5.6508 2.5650 -5.1643 12 1 6.5850 1.9872 -3.0020 13 16 2.3965 2.1258 1.4300 14 8 1.5549 1.5477 2.4182 15 8 2.4327 3.5203 1.1590 16 7 3.9447 1.6844 1.8180 17 6 5.0597 2.0934 0.9602 18 6 6.3778 1.9099 1.7152 19 1 6.5006 0.9045 2.1180 20 6 7.6089 2.4252 0.9479 21 6 8.0866 2.9964 2.2952 22 7 6.6616 2.9829 2.6935 23 6 6.5045 2.4952 4.0702 24 1 -0.3633 -1.0236 0.0911 25 1 -0.3634 0.5907 0.8409 26 1 -0.3633 0.4329 -0.9321 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.3303 1.8751 -1.9188 30 1 2.2000 3.1758 -1.0702 31 1 3.4018 3.6656 -4.4608 32 1 4.1133 1.1552 2.6132 33 1 4.9414 3.1415 0.6854 34 1 5.0687 1.4803 0.0591 35 1 7.3755 3.1886 0.2058 36 1 8.2470 1.6330 0.5563 37 1 8.7091 2.3088 2.8678 38 1 8.5126 3.9969 2.2217 39 1 6.7036 3.3080 4.7687 40 1 5.4860 2.1342 4.2137 41 1 7.2070 1.6814 4.2499 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921413702.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:11 Heat of formation + Delta-G solvation = -45.166584 kcal Electronic energy + Delta-G solvation = -23077.675703 eV Core-core repulsion = 19734.464780 eV Total energy + Delta-G solvation = -3343.210923 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.140 amu Computer time = 3.89 seconds Orbital eigenvalues (eV) -39.90805 -36.56136 -35.99426 -35.10484 -34.42724 -32.69415 -30.61936 -29.89420 -27.56424 -26.57641 -24.09242 -23.12863 -22.94916 -21.65445 -19.76243 -18.56800 -17.04509 -16.83834 -16.44575 -16.09684 -15.65957 -15.19106 -15.10076 -14.48815 -14.08929 -13.77972 -13.28112 -13.12701 -13.08381 -12.87190 -12.06737 -12.02794 -11.94016 -11.82867 -11.66475 -11.45966 -11.32890 -11.31201 -11.21535 -11.03924 -10.95258 -10.71850 -10.52063 -10.46640 -10.34141 -10.00855 -9.78291 -8.89204 -8.77409 -8.48702 -8.02166 -6.09985 -4.16757 1.38281 3.24548 3.30765 3.31660 3.60026 3.89480 4.25632 4.35541 4.57059 4.78349 5.07349 5.12676 5.23639 5.26348 5.31522 5.35224 5.43961 5.46614 5.65998 5.78871 5.80406 5.84489 5.85884 6.02883 6.07912 6.16707 6.24442 6.36829 6.47656 6.53999 6.70673 6.75161 7.09501 7.33763 7.41998 7.49835 7.73193 7.87282 8.17569 8.87037 9.48517 10.97971 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.011211 B = 0.008511 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.928097 B = 3289.004633 C = 5181.314289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.133 3.867 3 N -0.992 5.992 4 C 0.243 3.757 5 C -0.539 4.539 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.273 1.273 13 S 2.786 3.214 14 O -1.004 7.004 15 O -0.976 6.976 16 N -1.128 6.128 17 C 0.139 3.861 18 C 0.025 3.975 19 H 0.080 0.920 20 C -0.139 4.139 21 C -0.002 4.002 22 N -0.474 5.474 23 C -0.010 4.010 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.033 0.967 30 H 0.056 0.944 31 H 0.265 0.735 32 H 0.402 0.598 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.721 -5.712 9.952 13.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.006 3.994 3 N -0.834 5.834 4 C 0.121 3.879 5 C -0.579 4.579 6 H 0.081 0.919 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.199 1.199 13 S 2.794 3.206 14 O -0.988 6.988 15 O -0.960 6.960 16 N -0.886 5.886 17 C 0.013 3.987 18 C -0.086 4.086 19 H 0.098 0.902 20 C -0.177 4.177 21 C -0.131 4.131 22 N -0.197 5.197 23 C -0.160 4.160 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.233 0.767 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 5.704 -4.255 10.119 12.370 hybrid contribution 1.681 -1.575 -0.248 2.317 sum 7.385 -5.830 9.871 13.637 Atomic orbital electron populations 1.22211 0.97013 1.01240 1.02452 1.20930 0.93596 0.82982 1.01891 1.57741 1.78770 1.22925 1.23970 1.19208 0.97087 0.92718 0.78884 1.21481 1.07168 1.20856 1.08345 0.91891 1.24950 0.97066 0.94759 0.97006 1.69921 1.38002 1.24420 1.20165 0.86688 0.83879 0.78547 0.79087 1.20326 1.21272 1.19851 1.01724 0.72575 0.73752 0.72578 1.93538 1.65348 1.79836 1.60087 1.93583 1.86468 1.30883 1.85033 1.55923 1.25197 1.70898 1.36626 1.21336 0.82726 1.02470 0.92166 1.23733 0.96124 0.94534 0.94171 0.90224 1.23361 0.95947 1.01277 0.97164 1.23914 0.91188 1.01765 0.96200 1.68562 1.12688 1.35888 1.02578 1.22869 1.01568 0.99287 0.92232 0.92532 0.92480 0.92183 0.90168 0.92336 0.94873 0.92600 0.92524 0.76690 0.89298 0.89195 0.88242 0.90845 0.91619 0.89350 0.91317 0.91362 0.95065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 10.24 37.16 0.38 -2.34 16 2 C 0.13 2.29 6.01 -4.04 -0.02 2.26 16 3 N -0.99 -20.22 2.84 -115.67 -0.33 -20.55 16 4 C 0.24 5.93 5.46 -5.20 -0.03 5.90 16 5 C -0.54 -13.49 8.51 -34.44 -0.29 -13.79 16 6 H 0.06 1.49 6.46 -52.49 -0.34 1.15 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -24.93 13.29 55.43 0.74 -24.20 16 9 Si 0.89 19.88 29.54 -169.99 -5.02 14.86 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 13 S 2.79 55.84 6.07 -107.50 -0.65 55.19 16 14 O -1.00 -20.73 17.10 -57.17 -0.98 -21.70 16 15 O -0.98 -23.39 16.02 -57.17 -0.92 -24.31 16 16 N -1.13 -18.47 6.05 -10.61 -0.06 -18.53 16 17 C 0.14 2.34 6.22 -4.04 -0.03 2.32 16 18 C 0.02 0.34 3.38 -66.65 -0.23 0.11 16 19 H 0.08 0.93 7.92 -51.93 -0.41 0.52 16 20 C -0.14 -1.72 7.85 -25.80 -0.20 -1.92 16 21 C 0.00 -0.02 7.97 -2.77 -0.02 -0.04 16 22 N -0.47 -6.40 6.36 -238.96 -1.52 -7.92 16 23 C -0.01 -0.12 9.66 60.06 0.58 0.46 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.96 7.89 -51.93 -0.41 0.55 16 26 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 27 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 28 H 0.06 0.89 7.80 -51.93 -0.40 0.48 16 29 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.53 6.77 -51.93 -0.35 1.17 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.40 5.44 8.37 -34.47 -0.29 5.15 16 33 H 0.09 1.74 7.75 -51.93 -0.40 1.34 16 34 H 0.09 1.60 5.91 -51.93 -0.31 1.29 16 35 H 0.10 1.36 8.10 -51.93 -0.42 0.94 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.61 7.60 -51.93 -0.39 0.22 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.78 7.86 -51.93 -0.41 0.37 16 41 H 0.03 0.30 7.60 -51.93 -0.39 -0.10 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -31.20 344.61 -10.13 -41.33 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.62 Total: 6.04 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 0.04 Total: -5.41 kcal Atomic # 7 Polarization: -70.02 SS G_CDS: -1.18 Total: -71.20 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -1.89 Total: -46.01 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 55.84 SS G_CDS: -0.65 Total: 55.19 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.20 -10.13 -41.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921413702.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.834 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.89 seconds