Wall clock time and date at job start Tue Mar 31 2020 03:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46979 * 2 1 4 4 C 1.46502 * 119.99465 * 274.33048 * 3 2 1 5 5 C 1.50693 * 109.47230 * 280.39121 * 4 3 2 6 6 H 1.07999 * 120.00424 * 3.96098 * 5 4 3 7 7 C 1.37879 * 119.99862 * 183.95714 * 5 4 3 8 8 N 1.31514 * 120.00326 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00056 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47286 * 59.99440 * 9 7 5 11 11 H 1.48492 * 109.47293 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46833 * 299.99971 * 9 7 5 13 13 S 1.65598 * 119.99988 * 94.33565 * 3 2 1 14 14 O 1.42097 * 106.40248 * 330.37612 * 13 3 2 15 15 O 1.42107 * 106.39792 * 197.45722 * 13 3 2 16 16 N 1.65598 * 107.21879 * 83.91690 * 13 3 2 17 17 C 1.46502 * 119.99915 * 64.64258 * 16 13 3 18 18 C 1.53004 * 109.46770 * 164.37837 * 17 16 13 19 19 H 1.08995 * 112.95676 * 53.35749 * 18 17 16 20 20 C 1.53943 * 113.75554 * 184.99777 * 18 17 16 21 21 C 1.53931 * 86.33757 * 138.14862 * 20 18 17 22 22 N 1.47955 * 113.85905 * 281.60604 * 18 17 16 23 23 C 1.46900 * 110.99942 * 108.09251 * 22 18 17 24 24 H 1.08997 * 109.47180 * 185.08574 * 1 2 3 25 25 H 1.08994 * 109.47468 * 305.08681 * 1 2 3 26 26 H 1.09007 * 109.46842 * 65.09046 * 1 2 3 27 27 H 1.08994 * 109.47296 * 239.99810 * 2 1 3 28 28 H 1.08999 * 109.46913 * 119.99406 * 2 1 3 29 29 H 1.08997 * 109.47322 * 40.40235 * 4 3 2 30 30 H 1.09000 * 109.46486 * 160.39511 * 4 3 2 31 31 H 0.96996 * 120.00184 * 179.97438 * 8 7 5 32 32 H 0.96995 * 119.99987 * 244.63518 * 16 13 3 33 33 H 1.08998 * 109.47517 * 44.37734 * 17 16 13 34 34 H 1.08999 * 109.46722 * 284.37489 * 17 16 13 35 35 H 1.08998 * 113.73535 * 23.79251 * 20 18 17 36 36 H 1.08998 * 113.82797 * 252.52054 * 20 18 17 37 37 H 1.09001 * 113.76378 * 90.59582 * 21 20 18 38 38 H 1.09001 * 113.76058 * 221.95719 * 21 20 18 39 39 H 1.08999 * 109.47520 * 180.88839 * 23 22 18 40 40 H 1.09000 * 109.46808 * 300.88247 * 23 22 18 41 41 H 1.09000 * 109.47479 * 60.87981 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1721 2.1037 -1.2652 5 6 3.4555 1.6810 -1.9323 6 1 4.0610 0.9017 -1.4935 7 6 3.8568 2.2890 -3.1029 8 7 3.1193 3.2376 -3.6375 9 14 5.4474 1.7645 -3.9302 10 1 5.3706 0.3239 -4.2822 11 1 5.6508 2.5650 -5.1643 12 1 6.5850 1.9872 -3.0020 13 16 2.3965 2.1258 1.4300 14 8 1.5549 1.5477 2.4182 15 8 2.4327 3.5203 1.1590 16 7 3.9447 1.6844 1.8180 17 6 5.0597 2.0934 0.9602 18 6 6.3778 1.9099 1.7152 19 1 6.5006 0.9045 2.1180 20 6 7.6089 2.4252 0.9479 21 6 8.0866 2.9964 2.2952 22 7 6.6616 2.9829 2.6935 23 6 6.5045 2.4952 4.0702 24 1 -0.3633 -1.0236 0.0911 25 1 -0.3634 0.5907 0.8409 26 1 -0.3633 0.4329 -0.9321 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.3303 1.8751 -1.9188 30 1 2.2000 3.1758 -1.0702 31 1 3.4018 3.6656 -4.4608 32 1 4.1133 1.1552 2.6132 33 1 4.9414 3.1415 0.6854 34 1 5.0687 1.4803 0.0591 35 1 7.3755 3.1886 0.2058 36 1 8.2470 1.6330 0.5563 37 1 8.7091 2.3088 2.8678 38 1 8.5126 3.9969 2.2217 39 1 6.7036 3.3080 4.7687 40 1 5.4860 2.1342 4.2137 41 1 7.2070 1.6814 4.2499 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921413702.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:10 Heat of formation + Delta-G solvation = -70.760579 kcal Electronic energy + Delta-G solvation = -23078.785542 eV Core-core repulsion = 19734.464780 eV Total energy + Delta-G solvation = -3344.320762 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.88688 -38.27922 -37.65418 -36.85314 -35.80569 -34.62940 -31.55913 -31.48244 -28.77011 -28.39709 -25.00462 -24.90581 -24.09584 -23.24731 -20.89602 -20.04823 -18.64464 -18.53557 -18.23849 -17.41044 -16.95103 -16.72812 -16.22382 -16.02776 -15.43922 -15.17192 -14.77942 -14.58293 -14.33629 -13.99435 -13.75114 -13.65981 -13.44879 -13.28677 -13.16470 -12.97531 -12.95946 -12.68606 -12.63636 -12.39220 -12.27103 -12.20490 -12.06073 -11.76380 -11.66690 -11.58060 -11.53713 -10.51852 -10.32060 -9.76783 -9.67614 -8.10603 -6.24359 -0.25202 1.48708 1.50483 1.57577 2.05079 2.47949 2.62693 2.97070 3.21843 3.48964 3.61137 3.86435 4.00469 4.16301 4.23086 4.32030 4.41206 4.46623 4.50134 4.55420 4.70640 4.73843 4.80960 4.82723 4.99171 5.00480 5.01114 5.12822 5.19669 5.28775 5.32359 5.43849 5.47924 5.56810 5.82628 5.94255 6.16665 6.18082 6.26099 6.87344 7.45532 8.97752 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.011211 B = 0.008511 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.928097 B = 3289.004633 C = 5181.314289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.123 3.877 3 N -0.995 5.995 4 C 0.258 3.742 5 C -0.536 4.536 6 H 0.080 0.920 7 C 0.010 3.990 8 N -0.932 5.932 9 Si 0.955 3.045 10 H -0.266 1.266 11 H -0.294 1.294 12 H -0.255 1.255 13 S 2.799 3.201 14 O -1.008 7.008 15 O -1.020 7.020 16 N -1.110 6.110 17 C 0.142 3.858 18 C 0.028 3.972 19 H 0.107 0.893 20 C -0.141 4.141 21 C 0.009 3.991 22 N -0.508 5.508 23 C -0.012 4.012 24 H 0.091 0.909 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.015 0.985 30 H 0.018 0.982 31 H 0.263 0.737 32 H 0.418 0.582 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.862 -8.127 11.126 16.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.836 5.836 4 C 0.135 3.865 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.189 4.189 8 N -0.571 5.571 9 Si 0.780 3.220 10 H -0.191 1.191 11 H -0.220 1.220 12 H -0.179 1.179 13 S 2.807 3.193 14 O -0.992 6.992 15 O -1.004 7.004 16 N -0.872 5.872 17 C 0.015 3.985 18 C -0.083 4.083 19 H 0.125 0.875 20 C -0.180 4.180 21 C -0.119 4.119 22 N -0.231 5.231 23 C -0.161 4.161 24 H 0.109 0.891 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.033 0.967 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.254 0.746 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.838 -6.706 11.337 15.327 hybrid contribution 0.964 -0.826 -0.536 1.378 sum 8.803 -7.532 10.801 15.839 Atomic orbital electron populations 1.22202 0.96155 1.03123 1.01261 1.21240 0.94457 0.81210 1.03349 1.57615 1.79455 1.24151 1.22397 1.18745 0.96577 0.91082 0.80142 1.21780 1.07101 1.20591 1.08006 0.90236 1.25842 1.00483 0.94723 0.97884 1.70081 1.40181 1.26129 1.20753 0.85646 0.80172 0.78357 0.77859 1.19126 1.22036 1.17909 1.01136 0.73181 0.72764 0.72228 1.93522 1.66125 1.79586 1.59963 1.93531 1.87290 1.33966 1.85610 1.55491 1.23717 1.70816 1.37196 1.21254 0.84573 0.99963 0.92678 1.23728 0.94094 0.95954 0.94496 0.87529 1.23359 0.95833 1.01394 0.97424 1.23943 0.90245 1.02499 0.95258 1.68516 1.14559 1.36398 1.03677 1.22914 1.01895 1.00170 0.91119 0.89062 0.93665 0.93433 0.89862 0.89606 0.96710 0.96402 0.92767 0.74635 0.92960 0.90099 0.90468 0.88718 0.88988 0.89232 0.91002 0.91941 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.19 10.24 71.98 0.74 -4.45 16 2 C 0.12 4.06 6.01 86.38 0.52 4.58 16 3 N -1.00 -40.77 2.84 -519.86 -1.48 -42.25 16 4 C 0.26 13.04 5.46 85.63 0.47 13.51 16 5 C -0.54 -27.00 8.51 25.60 0.22 -26.78 16 6 H 0.08 3.67 6.46 -2.91 -0.02 3.65 16 7 C 0.01 0.52 5.46 84.66 0.46 0.99 16 8 N -0.93 -54.00 13.29 21.45 0.28 -53.71 16 9 Si 0.96 40.44 29.54 68.60 2.03 42.46 16 10 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 11 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 13 S 2.80 112.80 6.07 -56.49 -0.34 112.46 16 14 O -1.01 -40.75 17.10 -128.00 -2.19 -42.94 16 15 O -1.02 -50.89 16.02 -128.00 -2.05 -52.94 16 16 N -1.11 -35.24 6.05 -187.48 -1.13 -36.37 16 17 C 0.14 4.69 6.22 86.38 0.54 5.23 16 18 C 0.03 0.69 3.38 45.02 0.15 0.84 16 19 H 0.11 2.06 7.92 -2.39 -0.02 2.04 16 20 C -0.14 -3.18 7.85 31.24 0.25 -2.93 16 21 C 0.01 0.17 7.97 86.40 0.69 0.86 16 22 N -0.51 -12.72 6.36 -909.92 -5.79 -18.51 16 23 C -0.01 -0.24 9.66 127.69 1.23 0.99 16 24 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.04 1.49 7.89 -2.39 -0.02 1.47 16 26 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.08 2.71 8.07 -2.39 -0.02 2.69 16 28 H 0.09 2.37 7.80 -2.39 -0.02 2.35 16 29 H 0.01 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.02 1.04 6.77 -2.39 -0.02 1.02 16 31 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.42 10.44 8.37 -96.75 -0.81 9.63 16 33 H 0.05 2.12 7.75 -2.39 -0.02 2.10 16 34 H 0.08 2.81 5.91 -2.39 -0.01 2.80 16 35 H 0.08 2.07 8.10 -2.39 -0.02 2.05 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.09 1.31 7.60 -2.39 -0.02 1.29 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.06 1.28 7.86 -2.39 -0.02 1.26 16 41 H 0.05 0.82 7.60 -2.39 -0.02 0.80 16 Total: -1.00 -69.00 344.61 -5.21 -74.20 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.21 Total: 24.77 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 5.26 Total: -7.18 kcal Atomic # 7 Polarization: -142.72 SS G_CDS: -8.12 Total: -150.84 kcal Atomic # 8 Polarization: -91.64 SS G_CDS: -4.24 Total: -95.88 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.46 kcal Atomic # 16 Polarization: 112.80 SS G_CDS: -0.34 Total: 112.46 kcal Total: -69.00 -5.21 -74.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921413702.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.443 kcal (2) G-P(sol) polarization free energy of solvation -68.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds