Wall clock time and date at job start Tue Mar 31 2020 04:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35429 * 119.47033 * 2 1 4 4 C 1.35762 * 121.22905 * 179.71950 * 3 2 1 5 5 C 1.39475 * 120.12856 * 0.55311 * 4 3 2 6 6 C 1.39337 * 118.95729 * 359.72874 * 5 4 3 7 7 C 1.47086 * 120.58515 * 180.02562 * 6 5 4 8 8 O 1.21648 * 119.99695 * 255.64537 * 7 6 5 9 9 N 1.34775 * 120.00224 * 75.64113 * 7 6 5 10 10 C 1.46967 * 120.59364 * 5.51807 * 9 7 6 11 11 C 1.53816 * 108.40028 * 124.75301 * 10 9 7 12 12 N 1.46967 * 108.57688 * 49.63698 * 11 10 9 13 13 C 1.36930 * 120.59264 * 124.62416 * 12 11 10 14 14 H 1.08004 * 120.00200 * 217.11665 * 13 12 11 15 15 C 1.38814 * 119.99914 * 37.11340 * 13 12 11 16 16 N 1.31618 * 120.00404 * 358.10610 * 15 13 12 17 17 Si 1.86806 * 119.99838 * 178.10863 * 15 13 12 18 18 H 1.48493 * 109.47351 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47178 * 120.00013 * 17 15 13 20 20 H 1.48501 * 109.46981 * 239.99896 * 17 15 13 21 21 C 1.46965 * 118.81103 * 304.64862 * 12 11 10 22 22 C 1.46959 * 120.59531 * 185.79225 * 9 7 6 23 23 C 1.34650 * 119.46725 * 180.27354 * 2 1 3 24 24 O 1.21890 * 120.10455 * 0.02562 * 23 2 1 25 25 H 1.09007 * 109.46730 * 269.73466 * 1 2 3 26 26 H 1.08998 * 109.47477 * 149.73247 * 1 2 3 27 27 H 1.09000 * 109.46992 * 29.72310 * 1 2 3 28 28 H 1.08004 * 119.38932 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.93756 * 180.28582 * 4 3 2 30 30 H 1.07998 * 120.52092 * 179.75261 * 5 4 3 31 31 H 1.08999 * 109.61261 * 244.54043 * 10 9 7 32 32 H 1.09004 * 109.60809 * 5.05049 * 10 9 7 33 33 H 1.09003 * 109.73927 * 289.85076 * 11 10 9 34 34 H 1.08996 * 109.53438 * 169.30691 * 11 10 9 35 35 H 0.97000 * 120.00408 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.60814 * 295.47567 * 21 12 11 37 37 H 1.09000 * 109.60473 * 174.96999 * 21 12 11 38 38 H 1.08996 * 109.61237 * 354.95450 * 22 9 7 39 39 H 1.09000 * 109.60756 * 115.46156 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1313 1.1791 0.0000 4 6 3.4883 1.2207 0.0057 5 6 4.2251 0.0365 0.0000 6 6 3.5463 -1.1803 -0.0057 7 6 4.2876 -2.4508 -0.0112 8 8 4.3688 -3.1031 -1.0348 9 7 4.8768 -2.8921 1.1177 10 6 4.6871 -2.1787 2.3886 11 6 4.1497 -3.1756 3.4294 12 7 4.9982 -4.3754 3.4104 13 6 5.5976 -4.8232 4.5572 14 1 6.5923 -5.2422 4.5186 15 6 4.9267 -4.7387 5.7696 16 7 3.7297 -4.1941 5.8228 17 14 5.7230 -5.3979 7.3256 18 1 7.0595 -5.9568 6.9992 19 1 5.8735 -4.2960 8.3096 20 1 4.8686 -6.4655 7.9047 21 6 5.1924 -5.0855 2.1385 22 6 5.7253 -4.0918 1.0988 23 6 2.1274 -1.1723 -0.0056 24 8 1.5101 -2.2233 -0.0111 25 1 -0.3633 -0.0048 1.0277 26 1 -0.3634 -0.8875 -0.5180 27 1 -0.3633 0.8925 -0.5095 28 1 1.5728 2.1035 0.0004 29 1 3.9983 2.1727 0.0102 30 1 5.3048 0.0623 0.0005 31 1 5.6406 -1.7721 2.7257 32 1 3.9700 -1.3696 2.2504 33 1 3.1239 -3.4490 3.1819 34 1 4.1809 -2.7210 4.4195 35 1 3.2608 -4.1354 6.6699 36 1 4.2410 -5.4950 1.7992 37 1 5.9124 -5.8922 2.2762 38 1 5.6941 -4.5464 0.1086 39 1 6.7510 -3.8184 1.3462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957373488.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:48 Heat of formation + Delta-G solvation = 6.127676 kcal Electronic energy + Delta-G solvation = -23852.370857 eV Core-core repulsion = 20375.940269 eV Total energy + Delta-G solvation = -3476.430588 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.44505 -39.21336 -36.99190 -36.58172 -34.63296 -33.69358 -31.39429 -30.29360 -29.80180 -27.86244 -26.92469 -24.89499 -23.39138 -22.78693 -22.59905 -20.71827 -19.01260 -17.68412 -17.52194 -17.00928 -16.27226 -16.17297 -15.62207 -15.31206 -14.73092 -14.59423 -14.31602 -13.62439 -13.51719 -13.29855 -13.25162 -13.11835 -12.90315 -12.58178 -12.40930 -12.04541 -11.92744 -11.60876 -11.13669 -10.91179 -10.61923 -10.44037 -10.20968 -10.12398 -10.03247 -10.01605 -9.79740 -9.38118 -8.51261 -8.14609 -7.99837 -6.52140 -5.81868 -3.37674 0.53069 1.78795 2.36877 3.08614 3.34619 3.40301 3.42677 3.44641 3.71716 4.30662 4.45493 4.48575 4.74959 4.90472 4.95525 5.05875 5.14114 5.37049 5.41029 5.42385 5.69480 5.82316 5.90080 5.96911 6.00306 6.06532 6.21059 6.28501 6.33137 6.47491 6.55070 6.87023 6.92444 7.05129 7.36003 7.63393 7.76279 7.98138 8.00891 8.48119 8.64968 9.19720 9.77490 10.40219 11.24490 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021140 B = 0.004628 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.193666 B = 6049.027413 C = 6566.328987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.497 5.497 3 C 0.143 3.857 4 C -0.233 4.233 5 C 0.014 3.986 6 C -0.236 4.236 7 C 0.580 3.420 8 O -0.547 6.547 9 N -0.588 5.588 10 C 0.084 3.916 11 C 0.159 3.841 12 N -0.592 5.592 13 C -0.256 4.256 14 H 0.066 0.934 15 C 0.011 3.989 16 N -0.904 5.904 17 Si 0.905 3.095 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.288 1.288 21 C 0.131 3.869 22 C 0.096 3.904 23 C 0.529 3.471 24 O -0.526 6.526 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.164 0.836 29 H 0.150 0.850 30 H 0.138 0.862 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.022 0.978 34 H 0.105 0.895 35 H 0.255 0.745 36 H 0.025 0.975 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.689 15.924 -10.026 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.207 5.207 3 C 0.014 3.986 4 C -0.256 4.256 5 C -0.008 4.008 6 C -0.243 4.243 7 C 0.366 3.634 8 O -0.426 6.426 9 N -0.319 5.319 10 C -0.041 4.041 11 C 0.032 3.968 12 N -0.315 5.315 13 C -0.386 4.386 14 H 0.083 0.917 15 C -0.188 4.188 16 N -0.547 5.547 17 Si 0.734 3.266 18 H -0.201 1.201 19 H -0.216 1.216 20 H -0.215 1.215 21 C 0.004 3.996 22 C -0.028 4.028 23 C 0.329 3.671 24 O -0.405 6.405 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.104 0.896 28 H 0.181 0.819 29 H 0.168 0.832 30 H 0.156 0.844 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.040 0.960 34 H 0.123 0.877 35 H 0.065 0.935 36 H 0.043 0.957 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.210 14.838 -10.380 18.391 hybrid contribution 0.270 -0.069 0.979 1.018 sum -2.940 14.770 -9.401 17.753 Atomic orbital electron populations 1.22213 0.76872 1.04993 1.04299 1.45371 1.09462 1.06734 1.59153 1.22054 0.94106 0.89339 0.93113 1.20532 0.92317 0.99361 1.13437 1.21784 1.00773 0.90579 0.87702 1.20950 0.93111 0.95478 1.14800 1.17473 0.78469 0.83956 0.83492 1.90739 1.61712 1.57363 1.32765 1.47993 1.47972 1.27850 1.08104 1.22768 1.00602 0.96194 0.84505 1.21344 0.92010 0.86170 0.97267 1.43901 1.57068 1.26549 1.04007 1.19209 0.96949 1.37230 0.85215 0.91680 1.25389 0.95245 0.99221 0.98981 1.69894 1.13071 1.46650 1.25125 0.86188 0.78696 0.78612 0.83093 1.20129 1.21611 1.21476 1.21326 0.98323 0.93118 0.86807 1.22230 0.93064 0.86357 1.01127 1.16758 0.87896 0.82932 0.79481 1.90982 1.69100 1.29272 1.51149 0.90190 0.88624 0.89597 0.81850 0.83199 0.84374 0.91943 0.91727 0.95952 0.87687 0.93455 0.95674 0.91487 0.89973 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 10.35 59.85 0.62 1.10 16 2 N -0.50 -5.73 2.98 -126.76 -0.38 -6.11 16 3 C 0.14 1.09 10.25 -16.85 -0.17 0.91 16 4 C -0.23 -1.90 9.99 -40.01 -0.40 -2.30 16 5 C 0.01 0.17 9.51 -38.71 -0.37 -0.20 16 6 C -0.24 -4.00 3.81 -104.50 -0.40 -4.40 16 7 C 0.58 12.00 6.69 -12.67 -0.08 11.92 16 8 O -0.55 -12.96 16.52 5.23 0.09 -12.88 16 9 N -0.59 -12.01 2.94 -173.61 -0.51 -12.52 16 10 C 0.08 1.66 6.44 -3.36 -0.02 1.63 16 11 C 0.16 3.90 5.45 -3.36 -0.02 3.88 16 12 N -0.59 -15.26 2.96 -171.76 -0.51 -15.77 16 13 C -0.26 -7.01 9.53 -15.06 -0.14 -7.15 16 14 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 15 C 0.01 0.29 5.27 -17.43 -0.09 0.20 16 16 N -0.90 -26.04 10.81 55.49 0.60 -25.44 16 17 Si 0.90 21.42 29.55 -169.99 -5.02 16.40 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 21 C 0.13 2.98 6.67 -3.60 -0.02 2.96 16 22 C 0.10 1.93 6.60 -3.60 -0.02 1.91 16 23 C 0.53 9.15 7.44 -14.92 -0.11 9.04 16 24 O -0.53 -11.47 16.11 5.02 0.08 -11.39 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.10 0.98 7.38 -51.93 -0.38 0.59 16 27 H 0.09 0.35 7.99 -51.93 -0.42 -0.06 16 28 H 0.16 0.46 8.01 -52.48 -0.42 0.03 16 29 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 30 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.06 1.16 6.13 -51.93 -0.32 0.85 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.11 2.78 6.05 -51.93 -0.31 2.47 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 1.42 7.93 -51.93 -0.41 1.01 16 38 H 0.08 1.63 6.99 -51.93 -0.36 1.26 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 324.62 15.07 4.89 4.89 Total: -1.00 -37.56 324.62 -7.13 -44.69 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.13 Total: -1.37 kcal Atomic # 6 Polarization: 20.74 SS G_CDS: -1.24 Total: 19.50 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -0.80 Total: -59.84 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: 0.17 Total: -24.27 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -37.56 -7.13 -44.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957373488.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.819 kcal (2) G-P(sol) polarization free energy of solvation -37.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds