Wall clock time and date at job start Tue Mar 31 2020 04:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35429 * 119.47033 * 2 1 4 4 C 1.35762 * 121.22905 * 179.71950 * 3 2 1 5 5 C 1.39475 * 120.12856 * 0.55311 * 4 3 2 6 6 C 1.39337 * 118.95729 * 359.72874 * 5 4 3 7 7 C 1.47086 * 120.58515 * 180.02562 * 6 5 4 8 8 O 1.21648 * 119.99695 * 255.64537 * 7 6 5 9 9 N 1.34775 * 120.00224 * 75.64113 * 7 6 5 10 10 C 1.46967 * 120.59364 * 5.51807 * 9 7 6 11 11 C 1.53816 * 108.40028 * 124.75301 * 10 9 7 12 12 N 1.46967 * 108.57688 * 49.63698 * 11 10 9 13 13 C 1.36930 * 120.59264 * 124.62416 * 12 11 10 14 14 H 1.08004 * 120.00200 * 217.11665 * 13 12 11 15 15 C 1.38814 * 119.99914 * 37.11340 * 13 12 11 16 16 N 1.31618 * 120.00404 * 358.10610 * 15 13 12 17 17 Si 1.86806 * 119.99838 * 178.10863 * 15 13 12 18 18 H 1.48493 * 109.47351 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47178 * 120.00013 * 17 15 13 20 20 H 1.48501 * 109.46981 * 239.99896 * 17 15 13 21 21 C 1.46965 * 118.81103 * 304.64862 * 12 11 10 22 22 C 1.46959 * 120.59531 * 185.79225 * 9 7 6 23 23 C 1.34650 * 119.46725 * 180.27354 * 2 1 3 24 24 O 1.21890 * 120.10455 * 0.02562 * 23 2 1 25 25 H 1.09007 * 109.46730 * 269.73466 * 1 2 3 26 26 H 1.08998 * 109.47477 * 149.73247 * 1 2 3 27 27 H 1.09000 * 109.46992 * 29.72310 * 1 2 3 28 28 H 1.08004 * 119.38932 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.93756 * 180.28582 * 4 3 2 30 30 H 1.07998 * 120.52092 * 179.75261 * 5 4 3 31 31 H 1.08999 * 109.61261 * 244.54043 * 10 9 7 32 32 H 1.09004 * 109.60809 * 5.05049 * 10 9 7 33 33 H 1.09003 * 109.73927 * 289.85076 * 11 10 9 34 34 H 1.08996 * 109.53438 * 169.30691 * 11 10 9 35 35 H 0.97000 * 120.00408 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.60814 * 295.47567 * 21 12 11 37 37 H 1.09000 * 109.60473 * 174.96999 * 21 12 11 38 38 H 1.08996 * 109.61237 * 354.95450 * 22 9 7 39 39 H 1.09000 * 109.60756 * 115.46156 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1313 1.1791 0.0000 4 6 3.4883 1.2207 0.0057 5 6 4.2251 0.0365 0.0000 6 6 3.5463 -1.1803 -0.0057 7 6 4.2876 -2.4508 -0.0112 8 8 4.3688 -3.1031 -1.0348 9 7 4.8768 -2.8921 1.1177 10 6 4.6871 -2.1787 2.3886 11 6 4.1497 -3.1756 3.4294 12 7 4.9982 -4.3754 3.4104 13 6 5.5976 -4.8232 4.5572 14 1 6.5923 -5.2422 4.5186 15 6 4.9267 -4.7387 5.7696 16 7 3.7297 -4.1941 5.8228 17 14 5.7230 -5.3979 7.3256 18 1 7.0595 -5.9568 6.9992 19 1 5.8735 -4.2960 8.3096 20 1 4.8686 -6.4655 7.9047 21 6 5.1924 -5.0855 2.1385 22 6 5.7253 -4.0918 1.0988 23 6 2.1274 -1.1723 -0.0056 24 8 1.5101 -2.2233 -0.0111 25 1 -0.3633 -0.0048 1.0277 26 1 -0.3634 -0.8875 -0.5180 27 1 -0.3633 0.8925 -0.5095 28 1 1.5728 2.1035 0.0004 29 1 3.9983 2.1727 0.0102 30 1 5.3048 0.0623 0.0005 31 1 5.6406 -1.7721 2.7257 32 1 3.9700 -1.3696 2.2504 33 1 3.1239 -3.4490 3.1819 34 1 4.1809 -2.7210 4.4195 35 1 3.2608 -4.1354 6.6699 36 1 4.2410 -5.4950 1.7992 37 1 5.9124 -5.8922 2.2762 38 1 5.6941 -4.5464 0.1086 39 1 6.7510 -3.8184 1.3462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957373488.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:47 Heat of formation + Delta-G solvation = -21.620928 kcal Electronic energy + Delta-G solvation = -23853.574127 eV Core-core repulsion = 20375.940269 eV Total energy + Delta-G solvation = -3477.633858 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.49007 -40.75102 -38.43912 -38.07418 -35.77536 -35.39737 -33.24909 -31.97795 -31.04174 -28.81080 -28.58006 -26.24774 -25.09222 -24.37597 -23.69144 -22.37793 -20.60938 -19.20684 -18.54526 -18.13959 -17.81945 -17.49076 -16.99261 -16.65619 -16.48545 -15.95248 -15.47316 -15.43935 -15.22852 -15.12268 -14.82432 -14.26706 -14.02835 -13.54207 -13.48403 -13.43966 -13.14287 -13.05578 -12.83155 -12.74584 -12.47973 -12.23257 -12.08275 -12.01970 -11.71681 -11.33841 -11.10756 -10.84505 -10.60392 -9.86014 -8.99708 -8.58548 -7.90718 -5.52392 -0.35942 0.85930 1.27405 1.46929 1.49429 1.59976 1.79853 2.07889 2.47922 2.57260 3.25805 3.51723 3.56668 3.66683 3.88329 4.02422 4.17707 4.20473 4.22268 4.32101 4.41049 4.42836 4.53043 4.58109 4.73306 4.76770 4.78090 4.88265 4.99100 5.04146 5.19003 5.24090 5.50610 5.58871 5.61108 5.63514 5.97069 6.38637 6.41821 6.89821 7.08878 7.10506 7.71863 8.32516 9.13989 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021140 B = 0.004628 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.193666 B = 6049.027413 C = 6566.328987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.492 5.492 3 C 0.170 3.830 4 C -0.233 4.233 5 C 0.049 3.951 6 C -0.310 4.310 7 C 0.579 3.421 8 O -0.592 6.592 9 N -0.595 5.595 10 C 0.105 3.895 11 C 0.168 3.832 12 N -0.608 5.608 13 C -0.270 4.270 14 H 0.073 0.927 15 C -0.041 4.041 16 N -0.937 5.937 17 Si 0.976 3.024 18 H -0.263 1.263 19 H -0.284 1.284 20 H -0.295 1.295 21 C 0.132 3.868 22 C 0.104 3.896 23 C 0.512 3.488 24 O -0.604 6.604 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.143 0.857 28 H 0.232 0.768 29 H 0.202 0.798 30 H 0.156 0.844 31 H 0.083 0.917 32 H 0.084 0.916 33 H -0.023 1.023 34 H 0.086 0.914 35 H 0.253 0.747 36 H -0.006 1.006 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.646 20.218 -9.931 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.199 5.199 3 C 0.041 3.959 4 C -0.255 4.255 5 C 0.026 3.974 6 C -0.318 4.318 7 C 0.368 3.632 8 O -0.473 6.473 9 N -0.326 5.326 10 C -0.019 4.019 11 C 0.041 3.959 12 N -0.332 5.332 13 C -0.399 4.399 14 H 0.090 0.910 15 C -0.237 4.237 16 N -0.582 5.582 17 Si 0.803 3.197 18 H -0.187 1.187 19 H -0.211 1.211 20 H -0.222 1.222 21 C 0.005 3.995 22 C -0.020 4.020 23 C 0.315 3.685 24 O -0.490 6.490 25 H 0.104 0.896 26 H 0.084 0.916 27 H 0.161 0.839 28 H 0.248 0.752 29 H 0.219 0.781 30 H 0.173 0.827 31 H 0.101 0.899 32 H 0.102 0.898 33 H -0.005 1.005 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.012 0.988 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.154 19.195 -10.296 21.888 hybrid contribution -0.129 -1.216 0.902 1.520 sum -2.283 17.978 -9.394 20.413 Atomic orbital electron populations 1.22509 0.74956 1.06327 1.05137 1.45488 1.10909 1.06523 1.56943 1.23274 0.94775 0.89622 0.88260 1.21173 0.92596 0.99655 1.12045 1.22221 1.01954 0.90018 0.83248 1.20556 0.93098 0.95208 1.22892 1.18147 0.77499 0.85070 0.82514 1.90675 1.63063 1.59366 1.34242 1.48103 1.48137 1.27882 1.08435 1.22475 1.01706 0.94968 0.82734 1.21089 0.90003 0.87024 0.97755 1.44150 1.56940 1.27405 1.04661 1.19566 0.97420 1.37084 0.85875 0.90956 1.26188 0.95824 0.99494 1.02206 1.70089 1.14612 1.47773 1.25695 0.85084 0.78050 0.77605 0.78942 1.18716 1.21070 1.22166 1.21377 0.97353 0.94237 0.86525 1.22092 0.93977 0.86003 0.99926 1.16956 0.88257 0.83714 0.79529 1.90922 1.70389 1.32113 1.55616 0.89597 0.91623 0.83936 0.75193 0.78105 0.82653 0.89879 0.89789 1.00499 0.89630 0.93759 0.98754 0.90066 0.90062 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.73 10.35 127.77 1.32 2.05 16 2 N -0.49 -10.17 2.98 -673.16 -2.00 -12.18 16 3 C 0.17 1.55 10.25 83.56 0.86 2.41 16 4 C -0.23 -2.38 9.99 21.99 0.22 -2.16 16 5 C 0.05 1.01 9.51 22.83 0.22 1.23 16 6 C -0.31 -10.57 3.81 -19.79 -0.08 -10.65 16 7 C 0.58 25.00 6.69 86.56 0.58 25.58 16 8 O -0.59 -29.75 16.52 -4.18 -0.07 -29.82 16 9 N -0.59 -25.02 2.94 -821.41 -2.42 -27.43 16 10 C 0.10 4.20 6.44 86.57 0.56 4.76 16 11 C 0.17 8.65 5.45 86.57 0.47 9.12 16 12 N -0.61 -32.40 2.96 -697.34 -2.06 -34.46 16 13 C -0.27 -14.95 9.53 84.03 0.80 -14.15 16 14 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 15 C -0.04 -2.31 5.27 84.86 0.45 -1.86 16 16 N -0.94 -55.71 10.81 21.65 0.23 -55.48 16 17 Si 0.98 44.36 29.55 68.60 2.03 46.38 16 18 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 21 C 0.13 6.24 6.67 86.41 0.58 6.82 16 22 C 0.10 4.28 6.60 86.42 0.57 4.85 16 23 C 0.51 18.20 7.44 85.17 0.63 18.84 16 24 O -0.60 -28.74 16.11 -4.96 -0.08 -28.82 16 25 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.06 1.39 7.38 -2.39 -0.02 1.38 16 27 H 0.14 0.41 7.99 -2.39 -0.02 0.39 16 28 H 0.23 -0.89 8.01 -2.91 -0.02 -0.91 16 29 H 0.20 0.15 8.06 -2.91 -0.02 0.13 16 30 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 31 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 32 H 0.08 3.03 6.13 -2.38 -0.01 3.02 16 33 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 16 34 H 0.09 4.73 6.05 -2.39 -0.01 4.71 16 35 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 36 H -0.01 -0.30 8.14 -2.39 -0.02 -0.31 16 37 H 0.08 3.54 7.93 -2.39 -0.02 3.52 16 38 H 0.08 3.36 6.99 -2.39 -0.02 3.34 16 39 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -93.04 324.62 3.87 -89.18 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 1.06 Total: 5.78 kcal Atomic # 6 Polarization: 39.66 SS G_CDS: 7.18 Total: 46.84 kcal Atomic # 7 Polarization: -123.29 SS G_CDS: -6.25 Total: -129.54 kcal Atomic # 8 Polarization: -58.49 SS G_CDS: -0.15 Total: -58.64 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -93.04 3.87 -89.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957373488.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.558 kcal (2) G-P(sol) polarization free energy of solvation -93.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds