Wall clock time and date at job start Tue Mar 31 2020 04:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34595 * 119.47692 * 2 1 4 4 C 1.37999 * 120.45620 * 180.28183 * 3 2 1 5 5 C 1.47451 * 120.25813 * 179.74058 * 4 3 2 6 6 O 1.21613 * 120.00052 * 259.15214 * 5 4 3 7 7 N 1.34774 * 120.00187 * 79.15851 * 5 4 3 8 8 C 1.47020 * 125.65120 * 355.03915 * 7 5 4 9 9 C 1.54324 * 107.27477 * 181.02396 * 8 7 5 10 10 C 1.55155 * 102.93875 * 22.19307 * 9 8 7 11 11 H 1.09002 * 111.03972 * 82.58844 * 10 9 8 12 12 N 1.46502 * 111.00139 * 206.42311 * 10 9 8 13 13 C 1.36934 * 120.00154 * 198.65127 * 12 10 9 14 14 H 1.08001 * 120.00184 * 0.02562 * 13 12 10 15 15 C 1.38809 * 120.00235 * 179.97438 * 13 12 10 16 16 N 1.31623 * 120.00097 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00088 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.46835 * 269.99980 * 17 15 13 19 19 H 1.48502 * 109.46870 * 29.99513 * 17 15 13 20 20 H 1.48497 * 109.47311 * 149.99632 * 17 15 13 21 21 C 1.47433 * 125.64784 * 174.99479 * 7 5 4 22 22 C 1.41602 * 119.48385 * 359.46122 * 4 3 2 23 23 C 1.35979 * 119.00906 * 0.25712 * 22 4 3 24 24 C 1.34542 * 119.47661 * 179.71787 * 2 1 3 25 25 O 1.21964 * 119.74741 * 359.97438 * 24 2 1 26 26 H 1.08994 * 109.47263 * 180.28054 * 1 2 3 27 27 H 1.09004 * 109.46839 * 300.27959 * 1 2 3 28 28 H 1.08997 * 109.47113 * 60.27978 * 1 2 3 29 29 H 1.08000 * 119.77383 * 0.02562 * 3 2 1 30 30 H 1.08999 * 109.88148 * 300.44558 * 8 7 5 31 31 H 1.09000 * 109.87856 * 61.44974 * 8 7 5 32 32 H 1.08998 * 110.71863 * 263.82939 * 9 8 7 33 33 H 1.08995 * 110.71855 * 140.55600 * 9 8 7 34 34 H 0.96999 * 120.00100 * 18.64814 * 12 10 9 35 35 H 0.97000 * 119.99719 * 180.02562 * 16 15 13 36 36 H 1.09002 * 110.36420 * 37.07129 * 21 7 5 37 37 H 1.08999 * 110.36716 * 274.74517 * 21 7 5 38 38 H 1.07995 * 120.49239 * 180.22962 * 22 4 3 39 39 H 1.07994 * 120.24667 * 180.02562 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1273 1.1717 0.0000 4 6 3.5071 1.1953 -0.0059 5 6 4.2282 2.4815 -0.0116 6 8 4.6941 2.9127 -1.0488 7 7 4.3711 3.1791 1.1327 8 6 3.7741 2.8291 2.4299 9 6 4.1881 3.9243 3.4352 10 6 4.5261 5.1287 2.5173 11 1 3.6238 5.6715 2.2357 12 7 5.4943 6.0219 3.1584 13 6 5.6394 7.3082 2.7117 14 1 5.0399 7.6644 1.8870 15 6 6.5564 8.1548 3.3194 16 7 6.6962 9.3910 2.8897 17 14 7.5929 7.5391 4.7464 18 1 6.8812 7.7990 6.0235 19 1 7.8243 6.0799 4.5967 20 1 8.8973 8.2490 4.7532 21 6 5.1527 4.4190 1.2911 22 6 4.2250 -0.0252 -0.0003 23 6 3.5344 -1.1965 0.0054 24 6 2.1271 -1.1712 0.0058 25 8 1.5030 -2.2191 0.0114 26 1 -0.3633 -1.0276 0.0050 27 1 -0.3633 0.5182 0.8875 28 1 -0.3633 0.5095 -0.8925 29 1 1.5751 2.0999 0.0004 30 1 2.6882 2.7980 2.3418 31 1 4.1470 1.8595 2.7600 32 1 5.0650 3.6145 4.0036 33 1 3.3612 4.1679 4.1022 34 1 6.0325 5.7023 3.8994 35 1 7.3373 9.9824 3.3142 36 1 5.0583 5.0431 0.4025 37 1 6.2001 4.1854 1.4822 38 1 5.3050 -0.0257 -0.0010 39 1 4.0617 -2.1389 0.0101 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969187147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:45 Heat of formation + Delta-G solvation = -6.185378 kcal Electronic energy + Delta-G solvation = -22783.626524 eV Core-core repulsion = 19306.662002 eV Total energy + Delta-G solvation = -3476.964522 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.77481 -39.85278 -37.63268 -36.99294 -34.95871 -34.32601 -31.81974 -30.59330 -29.90341 -28.33170 -27.76406 -24.97157 -23.95414 -23.08994 -22.43805 -20.50781 -19.80991 -18.14733 -17.93010 -17.46918 -17.02687 -16.51886 -16.20804 -16.02511 -15.20191 -14.60284 -14.53063 -14.19185 -13.86745 -13.69930 -13.54861 -13.24021 -12.98641 -12.76754 -12.66541 -12.48521 -12.26191 -12.05125 -11.90100 -11.32597 -11.00021 -10.84303 -10.61533 -10.50396 -10.34730 -10.15321 -9.98501 -9.69676 -9.11078 -8.54633 -8.31715 -7.44824 -5.87914 -3.26791 0.43764 1.28654 2.12341 2.57681 3.01308 3.28198 3.29604 3.31678 3.38950 4.11672 4.18243 4.48532 4.50452 4.56196 4.69119 4.73553 4.76277 4.94475 5.01129 5.11281 5.19645 5.26695 5.50059 5.55779 5.58278 5.60877 5.73302 5.78061 5.83298 6.02674 6.03183 6.16488 6.33088 6.43887 6.58879 6.67202 7.55418 7.61140 7.85674 8.12964 8.30396 9.06527 9.78278 9.95403 11.29647 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.033344 B = 0.003200 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.532387 B = 8747.443947 C = 8799.120794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.490 5.490 3 C 0.170 3.830 4 C -0.224 4.224 5 C 0.585 3.415 6 O -0.530 6.530 7 N -0.607 5.607 8 C 0.107 3.893 9 C -0.144 4.144 10 C 0.177 3.823 11 H 0.074 0.926 12 N -0.736 5.736 13 C -0.255 4.255 14 H 0.093 0.907 15 C 0.010 3.990 16 N -0.928 5.928 17 Si 0.885 3.115 18 H -0.283 1.283 19 H -0.276 1.276 20 H -0.290 1.290 21 C 0.081 3.919 22 C 0.015 3.985 23 C -0.242 4.242 24 C 0.514 3.486 25 O -0.551 6.551 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.169 0.831 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.365 0.635 35 H 0.261 0.739 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.140 0.860 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.180 -19.059 -1.765 22.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.199 5.199 3 C 0.039 3.961 4 C -0.233 4.233 5 C 0.371 3.629 6 O -0.406 6.406 7 N -0.341 5.341 8 C -0.016 4.016 9 C -0.183 4.183 10 C 0.066 3.934 11 H 0.091 0.909 12 N -0.377 5.377 13 C -0.385 4.385 14 H 0.111 0.889 15 C -0.187 4.187 16 N -0.574 5.574 17 Si 0.715 3.285 18 H -0.209 1.209 19 H -0.203 1.203 20 H -0.216 1.216 21 C -0.044 4.044 22 C -0.007 4.007 23 C -0.263 4.263 24 C 0.316 3.684 25 O -0.434 6.434 26 H 0.124 0.876 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.187 0.813 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.198 0.802 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.158 0.842 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.405 -19.293 -2.491 22.550 hybrid contribution 0.946 -0.220 1.012 1.403 sum -10.459 -19.513 -1.480 22.189 Atomic orbital electron populations 1.22317 0.76640 1.06633 1.03707 1.45075 1.09735 1.06684 1.58387 1.22038 0.92451 0.90009 0.91557 1.19459 0.92264 0.94975 1.16575 1.17371 0.80041 0.82865 0.82657 1.90848 1.49614 1.69315 1.30833 1.48560 1.50377 1.26638 1.08489 1.21976 0.97641 0.98746 0.83274 1.22947 1.02387 0.95370 0.97553 1.21280 0.93034 0.89100 0.90014 0.90851 1.42651 1.45283 1.10845 1.38956 1.19065 1.19004 0.85721 1.14670 0.88942 1.24694 0.99174 0.95646 0.99137 1.69701 1.38632 1.05657 1.43460 0.86560 0.80555 0.78063 0.83361 1.20935 1.20259 1.21597 1.23415 0.95450 0.83573 1.01938 1.21332 1.00914 0.90176 0.88247 1.21989 0.92293 0.99975 1.12078 1.17237 0.89502 0.82621 0.79015 1.90928 1.69468 1.29953 1.53015 0.87571 0.89770 0.89872 0.81337 0.91809 0.91637 0.90549 0.89838 0.80197 0.92844 0.90295 0.91274 0.84209 0.82821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.27 10.55 59.85 0.63 0.90 16 2 N -0.49 -4.23 2.95 -126.73 -0.37 -4.60 16 3 C 0.17 1.40 10.08 -16.43 -0.17 1.23 16 4 C -0.22 -2.36 4.82 -104.95 -0.51 -2.86 16 5 C 0.58 8.13 7.25 -12.51 -0.09 8.04 16 6 O -0.53 -9.65 17.34 5.27 0.09 -9.56 16 7 N -0.61 -8.16 3.33 -171.77 -0.57 -8.73 16 8 C 0.11 1.10 6.46 -3.06 -0.02 1.08 16 9 C -0.14 -1.75 6.58 -24.90 -0.16 -1.92 16 10 C 0.18 2.98 3.69 -65.78 -0.24 2.73 16 11 H 0.07 1.27 8.13 -51.93 -0.42 0.84 16 12 N -0.74 -15.82 5.08 -51.35 -0.26 -16.08 16 13 C -0.26 -6.76 10.47 -15.06 -0.16 -6.92 16 14 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 15 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 16 N -0.93 -28.16 13.97 55.49 0.78 -27.38 16 17 Si 0.88 20.95 27.74 -169.99 -4.71 16.24 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.09 6.52 56.52 0.37 -5.72 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 C 0.08 1.35 6.63 -2.52 -0.02 1.33 16 22 C 0.02 0.15 9.86 -39.11 -0.39 -0.24 16 23 C -0.24 -2.40 9.97 -39.44 -0.39 -2.80 16 24 C 0.51 5.85 7.40 -15.41 -0.11 5.74 16 25 O -0.55 -7.96 16.33 4.95 0.08 -7.88 16 26 H 0.11 0.74 6.83 -51.93 -0.35 0.38 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.17 0.95 8.05 -52.49 -0.42 0.53 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.93 8.00 -51.93 -0.42 0.52 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.36 7.65 5.57 -40.82 -0.23 7.42 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.08 1.48 7.99 -51.93 -0.41 1.07 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 332.60 15.07 5.01 5.01 Total: -1.00 -34.99 332.60 -6.91 -41.90 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.23 Total: 4.56 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -1.72 Total: 6.52 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.43 Total: -56.79 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: 0.17 Total: -17.44 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.71 Total: 16.24 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.99 -6.91 -41.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969187147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.718 kcal (2) G-P(sol) polarization free energy of solvation -34.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds