Wall clock time and date at job start Tue Mar 31 2020 04:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34595 * 119.47692 * 2 1 4 4 C 1.37999 * 120.45620 * 180.28183 * 3 2 1 5 5 C 1.47451 * 120.25813 * 179.74058 * 4 3 2 6 6 O 1.21613 * 120.00052 * 259.15214 * 5 4 3 7 7 N 1.34774 * 120.00187 * 79.15851 * 5 4 3 8 8 C 1.47020 * 125.65120 * 355.03915 * 7 5 4 9 9 C 1.54324 * 107.27477 * 181.02396 * 8 7 5 10 10 C 1.55155 * 102.93875 * 22.19307 * 9 8 7 11 11 H 1.09002 * 111.03972 * 82.58844 * 10 9 8 12 12 N 1.46502 * 111.00139 * 206.42311 * 10 9 8 13 13 C 1.36934 * 120.00154 * 198.65127 * 12 10 9 14 14 H 1.08001 * 120.00184 * 0.02562 * 13 12 10 15 15 C 1.38809 * 120.00235 * 179.97438 * 13 12 10 16 16 N 1.31623 * 120.00097 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00088 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.46835 * 269.99980 * 17 15 13 19 19 H 1.48502 * 109.46870 * 29.99513 * 17 15 13 20 20 H 1.48497 * 109.47311 * 149.99632 * 17 15 13 21 21 C 1.47433 * 125.64784 * 174.99479 * 7 5 4 22 22 C 1.41602 * 119.48385 * 359.46122 * 4 3 2 23 23 C 1.35979 * 119.00906 * 0.25712 * 22 4 3 24 24 C 1.34542 * 119.47661 * 179.71787 * 2 1 3 25 25 O 1.21964 * 119.74741 * 359.97438 * 24 2 1 26 26 H 1.08994 * 109.47263 * 180.28054 * 1 2 3 27 27 H 1.09004 * 109.46839 * 300.27959 * 1 2 3 28 28 H 1.08997 * 109.47113 * 60.27978 * 1 2 3 29 29 H 1.08000 * 119.77383 * 0.02562 * 3 2 1 30 30 H 1.08999 * 109.88148 * 300.44558 * 8 7 5 31 31 H 1.09000 * 109.87856 * 61.44974 * 8 7 5 32 32 H 1.08998 * 110.71863 * 263.82939 * 9 8 7 33 33 H 1.08995 * 110.71855 * 140.55600 * 9 8 7 34 34 H 0.96999 * 120.00100 * 18.64814 * 12 10 9 35 35 H 0.97000 * 119.99719 * 180.02562 * 16 15 13 36 36 H 1.09002 * 110.36420 * 37.07129 * 21 7 5 37 37 H 1.08999 * 110.36716 * 274.74517 * 21 7 5 38 38 H 1.07995 * 120.49239 * 180.22962 * 22 4 3 39 39 H 1.07994 * 120.24667 * 180.02562 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1273 1.1717 0.0000 4 6 3.5071 1.1953 -0.0059 5 6 4.2282 2.4815 -0.0116 6 8 4.6941 2.9127 -1.0488 7 7 4.3711 3.1791 1.1327 8 6 3.7741 2.8291 2.4299 9 6 4.1881 3.9243 3.4352 10 6 4.5261 5.1287 2.5173 11 1 3.6238 5.6715 2.2357 12 7 5.4943 6.0219 3.1584 13 6 5.6394 7.3082 2.7117 14 1 5.0399 7.6644 1.8870 15 6 6.5564 8.1548 3.3194 16 7 6.6962 9.3910 2.8897 17 14 7.5929 7.5391 4.7464 18 1 6.8812 7.7990 6.0235 19 1 7.8243 6.0799 4.5967 20 1 8.8973 8.2490 4.7532 21 6 5.1527 4.4190 1.2911 22 6 4.2250 -0.0252 -0.0003 23 6 3.5344 -1.1965 0.0054 24 6 2.1271 -1.1712 0.0058 25 8 1.5030 -2.2191 0.0114 26 1 -0.3633 -1.0276 0.0050 27 1 -0.3633 0.5182 0.8875 28 1 -0.3633 0.5095 -0.8925 29 1 1.5751 2.0999 0.0004 30 1 2.6882 2.7980 2.3418 31 1 4.1470 1.8595 2.7600 32 1 5.0650 3.6145 4.0036 33 1 3.3612 4.1679 4.1022 34 1 6.0325 5.7023 3.8994 35 1 7.3373 9.9824 3.3142 36 1 5.0583 5.0431 0.4025 37 1 6.2001 4.1854 1.4822 38 1 5.3050 -0.0257 -0.0010 39 1 4.0617 -2.1389 0.0101 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969187147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:44 Heat of formation + Delta-G solvation = -31.382412 kcal Electronic energy + Delta-G solvation = -22784.719149 eV Core-core repulsion = 19306.662002 eV Total energy + Delta-G solvation = -3478.057148 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.55803 -40.97014 -38.82476 -37.94575 -36.02787 -35.66723 -33.57708 -31.77832 -30.97767 -29.30455 -28.68073 -26.13451 -25.09186 -24.21040 -23.52456 -21.85994 -20.86132 -19.78497 -18.77938 -18.59608 -17.94043 -17.51572 -17.16098 -16.97675 -16.34198 -16.09183 -15.43878 -15.42249 -15.29147 -14.74126 -14.46013 -14.31232 -14.24129 -13.97433 -13.73540 -13.46092 -13.37124 -13.08014 -12.94342 -12.79044 -12.53974 -12.25567 -12.06466 -11.82441 -11.58000 -11.26508 -11.19954 -11.11219 -10.99532 -9.72951 -9.35366 -9.10799 -8.01950 -5.38106 -0.25871 0.45524 1.32618 1.40725 1.44962 1.51783 1.59294 1.98630 2.48649 2.49945 3.26636 3.35126 3.52307 3.53449 3.74439 3.80243 3.87491 4.07748 4.10019 4.24480 4.38664 4.41142 4.44249 4.50062 4.72953 4.77569 4.83934 4.89110 4.93067 5.01109 5.08691 5.18844 5.23452 5.32419 5.36984 5.77732 5.84078 6.21819 6.48961 6.80965 7.02707 7.07785 7.80950 7.99915 9.19208 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.033344 B = 0.003200 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.532387 B = 8747.443947 C = 8799.120794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.484 5.484 3 C 0.197 3.803 4 C -0.241 4.241 5 C 0.590 3.410 6 O -0.582 6.582 7 N -0.603 5.603 8 C 0.107 3.893 9 C -0.130 4.130 10 C 0.168 3.832 11 H 0.066 0.934 12 N -0.738 5.738 13 C -0.236 4.236 14 H 0.056 0.944 15 C -0.063 4.063 16 N -0.984 5.984 17 Si 0.957 3.043 18 H -0.274 1.274 19 H -0.247 1.247 20 H -0.302 1.302 21 C 0.089 3.911 22 C 0.023 3.977 23 C -0.251 4.251 24 C 0.504 3.496 25 O -0.590 6.590 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.105 0.895 29 H 0.203 0.797 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.371 0.629 35 H 0.258 0.742 36 H 0.045 0.955 37 H 0.056 0.944 38 H 0.148 0.852 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.533 -21.232 0.026 24.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.190 5.190 3 C 0.065 3.935 4 C -0.249 4.249 5 C 0.379 3.621 6 O -0.462 6.462 7 N -0.335 5.335 8 C -0.015 4.015 9 C -0.169 4.169 10 C 0.058 3.942 11 H 0.084 0.916 12 N -0.381 5.381 13 C -0.367 4.367 14 H 0.074 0.926 15 C -0.254 4.254 16 N -0.634 5.634 17 Si 0.784 3.216 18 H -0.200 1.200 19 H -0.172 1.172 20 H -0.229 1.229 21 C -0.037 4.037 22 C 0.001 3.999 23 C -0.272 4.272 24 C 0.308 3.692 25 O -0.476 6.476 26 H 0.108 0.892 27 H 0.132 0.868 28 H 0.123 0.877 29 H 0.220 0.780 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.126 0.874 34 H 0.205 0.795 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.166 0.834 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.817 -21.539 -0.677 25.073 hybrid contribution 1.245 0.483 0.347 1.380 sum -11.572 -21.056 -0.330 24.029 Atomic orbital electron populations 1.22609 0.74497 1.06427 1.06306 1.45172 1.11101 1.06054 1.56646 1.22387 0.91774 0.90793 0.88571 1.19133 0.93165 0.93173 1.19462 1.17760 0.79276 0.83390 0.81718 1.90829 1.51851 1.70719 1.32759 1.48553 1.49816 1.25266 1.09891 1.22235 0.99546 0.98916 0.80765 1.22910 1.03597 0.93008 0.97361 1.21463 0.91492 0.90089 0.91160 0.91560 1.42591 1.46464 1.09652 1.39374 1.19010 1.17218 0.87744 1.12758 0.92580 1.25557 1.01290 0.95836 1.02762 1.69898 1.40184 1.07502 1.45771 0.85391 0.77788 0.78857 0.79590 1.19969 1.17171 1.22876 1.22985 0.95378 0.84892 1.00402 1.21370 1.01385 0.89710 0.87411 1.22002 0.91907 1.00431 1.12894 1.17473 0.89992 0.82870 0.78859 1.90910 1.70235 1.31386 1.55100 0.89203 0.86789 0.87672 0.78026 0.88456 0.89256 0.90023 0.87425 0.79507 0.93327 0.93638 0.92547 0.83400 0.82107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.55 127.77 1.35 1.66 16 2 N -0.48 -6.78 2.95 -673.11 -1.99 -8.77 16 3 C 0.20 2.46 10.08 84.21 0.85 3.31 16 4 C -0.24 -4.41 4.82 -20.08 -0.10 -4.51 16 5 C 0.59 15.47 7.25 86.67 0.63 16.10 16 6 O -0.58 -21.25 17.34 -4.07 -0.07 -21.32 16 7 N -0.60 -14.89 3.33 -815.61 -2.71 -17.61 16 8 C 0.11 1.72 6.46 86.73 0.56 2.28 16 9 C -0.13 -2.65 6.58 31.78 0.21 -2.44 16 10 C 0.17 5.39 3.69 46.38 0.17 5.57 16 11 H 0.07 2.23 8.13 -2.39 -0.02 2.21 16 12 N -0.74 -30.98 5.08 -316.37 -1.61 -32.59 16 13 C -0.24 -12.77 10.47 84.03 0.88 -11.89 16 14 H 0.06 3.37 8.06 -2.91 -0.02 3.35 16 15 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 16 N -0.98 -61.76 13.97 21.65 0.30 -61.46 16 17 Si 0.96 43.11 27.74 68.60 1.90 45.02 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 19 H -0.25 -9.81 6.52 99.48 0.65 -9.16 16 20 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 21 C 0.09 2.96 6.63 86.85 0.58 3.53 16 22 C 0.02 0.40 9.86 22.57 0.22 0.62 16 23 C -0.25 -4.57 9.97 22.36 0.22 -4.34 16 24 C 0.50 10.57 7.40 84.89 0.63 11.19 16 25 O -0.59 -16.58 16.33 -5.20 -0.08 -16.67 16 26 H 0.09 1.07 6.83 -2.39 -0.02 1.05 16 27 H 0.11 0.23 8.14 -2.38 -0.02 0.22 16 28 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.20 1.19 8.05 -2.91 -0.02 1.17 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.63 8.00 -2.39 -0.02 1.61 16 33 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.37 14.63 5.57 -92.71 -0.52 14.11 16 35 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.04 1.79 7.99 -2.39 -0.02 1.77 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 39 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -80.92 332.60 2.90 -78.03 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.49 Total: 17.38 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 6.66 Total: 17.99 kcal Atomic # 7 Polarization: -114.42 SS G_CDS: -6.00 Total: -120.42 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -0.16 Total: -37.99 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.90 Total: 45.02 kcal Total: -80.92 2.90 -78.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969187147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.645 kcal (2) G-P(sol) polarization free energy of solvation -80.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds