Wall clock time and date at job start Tue Mar 31 2020 04:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34662 * 119.70540 * 2 1 4 4 O 1.21962 * 119.96023 * 359.97438 * 3 2 1 5 5 C 1.41245 * 120.08948 * 180.25317 * 3 2 1 6 6 C 1.36108 * 119.50399 * 359.74145 * 5 3 2 7 7 C 1.40403 * 119.42326 * 0.02562 * 6 5 3 8 8 C 1.36299 * 119.90269 * 359.97438 * 7 6 5 9 9 C 1.47883 * 119.75777 * 179.97438 * 8 7 6 10 10 O 1.21541 * 119.99795 * 174.32044 * 9 8 7 11 11 N 1.34774 * 119.99923 * 354.32489 * 9 8 7 12 12 C 1.46499 * 119.99836 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.46950 * 179.97438 * 12 11 9 14 14 C 1.53501 * 114.20520 * 175.00046 * 13 12 11 15 15 N 1.47061 * 87.98376 * 87.72053 * 14 13 12 16 16 C 1.36935 * 136.05457 * 207.08592 * 15 14 13 17 17 H 1.08007 * 120.00109 * 5.16658 * 16 15 14 18 18 C 1.38816 * 120.00116 * 185.17451 * 16 15 14 19 19 N 1.31615 * 119.99880 * 5.14392 * 18 16 15 20 20 Si 1.86796 * 120.00180 * 185.14528 * 18 16 15 21 21 H 1.48497 * 109.47209 * 265.00099 * 20 18 16 22 22 H 1.48501 * 109.47190 * 24.99758 * 20 18 16 23 23 H 1.48497 * 109.47358 * 144.99627 * 20 18 16 24 24 C 1.47060 * 87.88579 * 27.34051 * 15 14 13 25 25 H 1.08998 * 109.47298 * 244.98862 * 1 2 3 26 26 H 1.09001 * 109.47350 * 4.99110 * 1 2 3 27 27 H 1.09001 * 109.47479 * 124.99129 * 1 2 3 28 28 H 1.07996 * 120.24639 * 179.76702 * 5 3 2 29 29 H 1.07999 * 120.28740 * 179.97438 * 6 5 3 30 30 H 1.08000 * 120.05304 * 179.97438 * 7 6 5 31 31 H 0.96995 * 119.99800 * 359.97438 * 11 9 8 32 32 H 1.09001 * 109.47170 * 60.00152 * 12 11 9 33 33 H 1.08997 * 109.47411 * 300.00281 * 12 11 9 34 34 H 1.09000 * 113.28466 * 41.93791 * 13 12 11 35 35 H 1.09003 * 113.46708 * 332.93944 * 14 13 12 36 36 H 1.09000 * 113.52134 * 202.51273 * 14 13 12 37 37 H 0.97001 * 120.00238 * 180.02562 * 19 18 16 38 38 H 1.09007 * 113.46453 * 87.44123 * 24 15 14 39 39 H 1.08998 * 113.46730 * 217.87473 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1323 1.1697 0.0000 4 8 1.5163 2.2223 -0.0005 5 6 3.5447 1.1791 -0.0054 6 6 4.2229 -0.0009 -0.0052 7 6 3.5064 -1.2083 -0.0003 8 6 2.1435 -1.1896 0.0049 9 6 1.3920 -2.4633 0.0096 10 8 0.1815 -2.4542 0.1183 11 7 2.0494 -3.6340 -0.1067 12 6 1.3050 -4.8958 -0.1015 13 6 2.2815 -6.0646 -0.2470 14 6 1.6277 -7.4488 -0.1333 15 7 1.3685 -7.3877 -1.5796 16 6 0.4463 -7.9220 -2.4394 17 1 -0.3815 -8.4985 -2.0534 18 6 0.5754 -7.7227 -3.8071 19 7 1.6363 -7.1080 -4.2853 20 14 -0.7567 -8.3271 -4.9689 21 1 -0.3893 -9.6689 -5.4881 22 1 -2.0472 -8.4150 -4.2394 23 1 -0.8928 -7.3778 -6.1026 24 6 2.5394 -6.5057 -1.6970 25 1 -0.3634 -0.4345 0.9313 26 1 -0.3634 1.0238 -0.0894 27 1 -0.3634 -0.5893 -0.8419 28 1 4.0824 2.1157 -0.0092 29 1 5.3029 -0.0084 -0.0098 30 1 4.0342 -2.1505 -0.0005 31 1 3.0154 -3.6412 -0.1938 32 1 0.6007 -4.9055 -0.9334 33 1 0.7597 -4.9920 0.8373 34 1 3.1860 -5.9473 0.3499 35 1 0.7202 -7.4519 0.4706 36 1 2.3249 -8.2373 0.1499 37 1 1.7264 -6.9684 -5.2410 38 1 3.4778 -7.0451 -1.8263 39 1 2.4087 -5.7055 -2.4255 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031966817.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:14 Heat of formation + Delta-G solvation = 33.884367 kcal Electronic energy + Delta-G solvation = -22846.118314 eV Core-core repulsion = 19370.891346 eV Total energy + Delta-G solvation = -3475.226968 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.71073 -39.65060 -38.33830 -36.87972 -35.26945 -34.17356 -32.31024 -30.78526 -28.55003 -27.73582 -26.31610 -24.78361 -24.59740 -22.87682 -22.43045 -21.05123 -19.27181 -17.84732 -17.56139 -17.09909 -16.81231 -16.44833 -15.91351 -15.67746 -15.21787 -14.84407 -14.80956 -14.42290 -13.86702 -13.60485 -13.22539 -12.92701 -12.75370 -12.67018 -12.58863 -12.30115 -11.91664 -11.64954 -11.23325 -11.10695 -10.81424 -10.61483 -10.39220 -10.33946 -10.01778 -9.93084 -9.84466 -9.35837 -9.00756 -8.85672 -8.26074 -6.96325 -5.84806 -3.15919 0.19661 1.40959 2.25064 2.71150 3.01543 3.35901 3.41798 3.43554 3.45235 4.22529 4.34507 4.41331 4.57282 4.88411 4.91209 5.12359 5.17522 5.23399 5.34377 5.39561 5.47900 5.56155 5.70851 5.76776 5.87007 5.88472 5.94779 6.11350 6.24026 6.32306 6.42249 6.48434 6.61118 6.78653 7.07548 7.13951 7.35656 7.44946 7.77187 7.90120 7.96410 8.97349 9.64070 10.56272 11.33719 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021400 B = 0.003513 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.072057 B = 7968.103198 C = 8346.827387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.476 5.476 3 C 0.512 3.488 4 O -0.551 6.551 5 C -0.222 4.222 6 C -0.025 4.025 7 C -0.187 4.187 8 C 0.127 3.873 9 C 0.549 3.451 10 O -0.522 6.522 11 N -0.700 5.700 12 C 0.150 3.850 13 C -0.165 4.165 14 C 0.127 3.873 15 N -0.608 5.608 16 C -0.220 4.220 17 H 0.082 0.918 18 C -0.006 4.006 19 N -0.920 5.920 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.279 1.279 23 H -0.290 1.290 24 C 0.164 3.836 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.153 0.847 29 H 0.144 0.856 30 H 0.151 0.849 31 H 0.402 0.598 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.037 0.963 37 H 0.254 0.746 38 H 0.030 0.970 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.192 11.140 10.833 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.187 5.187 3 C 0.313 3.687 4 O -0.434 6.434 5 C -0.244 4.244 6 C -0.046 4.046 7 C -0.212 4.212 8 C 0.015 3.985 9 C 0.333 3.667 10 O -0.400 6.400 11 N -0.352 5.352 12 C 0.028 3.972 13 C -0.184 4.184 14 C 0.000 4.000 15 N -0.335 5.335 16 C -0.348 4.348 17 H 0.099 0.901 18 C -0.202 4.202 19 N -0.567 5.567 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.204 1.204 23 H -0.216 1.216 24 C 0.038 3.962 25 H 0.105 0.895 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.170 0.830 29 H 0.161 0.839 30 H 0.169 0.831 31 H 0.238 0.762 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.655 11.714 10.569 16.761 hybrid contribution 0.102 -0.634 -0.831 1.050 sum 5.758 11.080 9.738 15.835 Atomic orbital electron populations 1.22350 0.75820 1.04460 1.05172 1.45431 1.10118 1.05156 1.57962 1.17340 0.89341 0.82539 0.79440 1.90933 1.69951 1.29103 1.53383 1.22374 0.92608 1.00339 1.09086 1.21406 1.01075 0.91379 0.90750 1.20929 0.91131 1.00284 1.08859 1.20265 0.92502 0.86949 0.98792 1.17794 0.87137 0.83215 0.78563 1.90846 1.13147 1.86948 1.49010 1.45909 1.11316 1.05728 1.72205 1.21166 0.94009 0.79221 1.02794 1.23332 0.98040 0.95154 1.01921 1.22344 0.96786 0.92297 0.88558 1.45734 1.29565 1.56214 1.01955 1.18954 1.01025 1.28137 0.86637 0.90060 1.24794 0.97808 1.01161 0.96475 1.69822 1.27653 1.46854 1.12347 0.86119 0.81072 0.77966 0.80743 1.21612 1.20437 1.21583 1.22108 0.90199 0.93326 0.90561 0.89531 0.88974 0.89151 0.82967 0.83863 0.83133 0.76168 0.89355 0.91479 0.90768 0.93915 0.94547 0.93629 0.95230 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.80 8.93 59.85 0.53 1.34 16 2 N -0.48 -6.20 3.02 -122.80 -0.37 -6.57 16 3 C 0.51 6.98 7.43 -15.17 -0.11 6.87 16 4 O -0.55 -9.28 16.40 4.95 0.08 -9.20 16 5 C -0.22 -2.21 10.00 -39.21 -0.39 -2.60 16 6 C -0.02 -0.18 10.08 -39.53 -0.40 -0.58 16 7 C -0.19 -1.57 9.49 -39.47 -0.37 -1.94 16 8 C 0.13 1.46 6.63 -82.33 -0.55 0.92 16 9 C 0.55 7.38 7.69 -12.31 -0.09 7.29 16 10 O -0.52 -8.58 13.22 5.33 0.07 -8.51 16 11 N -0.70 -8.57 5.50 -61.24 -0.34 -8.91 16 12 C 0.15 2.29 5.52 -4.04 -0.02 2.27 16 13 C -0.16 -2.57 4.17 -89.97 -0.37 -2.94 16 14 C 0.13 2.35 8.25 -8.52 -0.07 2.28 16 15 N -0.61 -14.63 3.61 -184.63 -0.67 -15.30 16 16 C -0.22 -5.98 10.74 -15.06 -0.16 -6.14 16 17 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 18 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 19 N -0.92 -26.55 11.73 55.49 0.65 -25.90 16 20 Si 0.91 21.82 29.56 -169.99 -5.02 16.79 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C 0.16 3.46 6.78 -8.39 -0.06 3.40 16 25 H 0.09 1.08 7.37 -51.93 -0.38 0.70 16 26 H 0.09 1.16 6.88 -51.93 -0.36 0.81 16 27 H 0.09 1.21 7.07 -51.93 -0.37 0.84 16 28 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 29 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 30 H 0.15 0.83 6.33 -52.49 -0.33 0.49 16 31 H 0.40 3.69 6.48 -40.82 -0.26 3.43 16 32 H 0.09 1.72 7.93 -51.93 -0.41 1.31 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.04 0.75 8.12 -51.93 -0.42 0.33 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 1.53 7.46 -51.93 -0.39 1.14 16 LS Contribution 328.02 15.07 4.94 4.94 Total: -1.00 -34.11 328.02 -7.83 -41.93 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.01 Total: 0.81 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: -2.17 Total: 9.91 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.72 Total: -56.68 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: 0.15 Total: -17.71 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.11 -7.83 -41.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031966817.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.815 kcal (2) G-P(sol) polarization free energy of solvation -34.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds