Wall clock time and date at job start Tue Mar 31 2020 04:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34662 * 119.70540 * 2 1 4 4 O 1.21962 * 119.96023 * 359.97438 * 3 2 1 5 5 C 1.41245 * 120.08948 * 180.25317 * 3 2 1 6 6 C 1.36108 * 119.50399 * 359.74145 * 5 3 2 7 7 C 1.40403 * 119.42326 * 0.02562 * 6 5 3 8 8 C 1.36299 * 119.90269 * 359.97438 * 7 6 5 9 9 C 1.47883 * 119.75777 * 179.97438 * 8 7 6 10 10 O 1.21541 * 119.99795 * 174.32044 * 9 8 7 11 11 N 1.34774 * 119.99923 * 354.32489 * 9 8 7 12 12 C 1.46499 * 119.99836 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.46950 * 179.97438 * 12 11 9 14 14 C 1.53501 * 114.20520 * 175.00046 * 13 12 11 15 15 N 1.47061 * 87.98376 * 87.72053 * 14 13 12 16 16 C 1.36935 * 136.05457 * 207.08592 * 15 14 13 17 17 H 1.08007 * 120.00109 * 5.16658 * 16 15 14 18 18 C 1.38816 * 120.00116 * 185.17451 * 16 15 14 19 19 N 1.31615 * 119.99880 * 5.14392 * 18 16 15 20 20 Si 1.86796 * 120.00180 * 185.14528 * 18 16 15 21 21 H 1.48497 * 109.47209 * 265.00099 * 20 18 16 22 22 H 1.48501 * 109.47190 * 24.99758 * 20 18 16 23 23 H 1.48497 * 109.47358 * 144.99627 * 20 18 16 24 24 C 1.47060 * 87.88579 * 27.34051 * 15 14 13 25 25 H 1.08998 * 109.47298 * 244.98862 * 1 2 3 26 26 H 1.09001 * 109.47350 * 4.99110 * 1 2 3 27 27 H 1.09001 * 109.47479 * 124.99129 * 1 2 3 28 28 H 1.07996 * 120.24639 * 179.76702 * 5 3 2 29 29 H 1.07999 * 120.28740 * 179.97438 * 6 5 3 30 30 H 1.08000 * 120.05304 * 179.97438 * 7 6 5 31 31 H 0.96995 * 119.99800 * 359.97438 * 11 9 8 32 32 H 1.09001 * 109.47170 * 60.00152 * 12 11 9 33 33 H 1.08997 * 109.47411 * 300.00281 * 12 11 9 34 34 H 1.09000 * 113.28466 * 41.93791 * 13 12 11 35 35 H 1.09003 * 113.46708 * 332.93944 * 14 13 12 36 36 H 1.09000 * 113.52134 * 202.51273 * 14 13 12 37 37 H 0.97001 * 120.00238 * 180.02562 * 19 18 16 38 38 H 1.09007 * 113.46453 * 87.44123 * 24 15 14 39 39 H 1.08998 * 113.46730 * 217.87473 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1323 1.1697 0.0000 4 8 1.5163 2.2223 -0.0005 5 6 3.5447 1.1791 -0.0054 6 6 4.2229 -0.0009 -0.0052 7 6 3.5064 -1.2083 -0.0003 8 6 2.1435 -1.1896 0.0049 9 6 1.3920 -2.4633 0.0096 10 8 0.1815 -2.4542 0.1183 11 7 2.0494 -3.6340 -0.1067 12 6 1.3050 -4.8958 -0.1015 13 6 2.2815 -6.0646 -0.2470 14 6 1.6277 -7.4488 -0.1333 15 7 1.3685 -7.3877 -1.5796 16 6 0.4463 -7.9220 -2.4394 17 1 -0.3815 -8.4985 -2.0534 18 6 0.5754 -7.7227 -3.8071 19 7 1.6363 -7.1080 -4.2853 20 14 -0.7567 -8.3271 -4.9689 21 1 -0.3893 -9.6689 -5.4881 22 1 -2.0472 -8.4150 -4.2394 23 1 -0.8928 -7.3778 -6.1026 24 6 2.5394 -6.5057 -1.6970 25 1 -0.3634 -0.4345 0.9313 26 1 -0.3634 1.0238 -0.0894 27 1 -0.3634 -0.5893 -0.8419 28 1 4.0824 2.1157 -0.0092 29 1 5.3029 -0.0084 -0.0098 30 1 4.0342 -2.1505 -0.0005 31 1 3.0154 -3.6412 -0.1938 32 1 0.6007 -4.9055 -0.9334 33 1 0.7597 -4.9920 0.8373 34 1 3.1860 -5.9473 0.3499 35 1 0.7202 -7.4519 0.4706 36 1 2.3249 -8.2373 0.1499 37 1 1.7264 -6.9684 -5.2410 38 1 3.4778 -7.0451 -1.8263 39 1 2.4087 -5.7055 -2.4255 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031966817.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:08 Heat of formation + Delta-G solvation = 9.189197 kcal Electronic energy + Delta-G solvation = -22847.189177 eV Core-core repulsion = 19370.891346 eV Total energy + Delta-G solvation = -3476.297831 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 5.78 seconds Orbital eigenvalues (eV) -42.64212 -40.80461 -39.80282 -37.87791 -36.33207 -35.19507 -34.22433 -31.83351 -30.11723 -28.69786 -27.78806 -26.30517 -25.70516 -24.26225 -23.58212 -22.12710 -20.65863 -19.01965 -18.62791 -18.44870 -17.97862 -17.47091 -17.06624 -16.89077 -16.73530 -16.20975 -15.69750 -15.65606 -15.55117 -14.86819 -14.45232 -14.37465 -13.98510 -13.82602 -13.46873 -13.36287 -13.13867 -12.99127 -12.84218 -12.75278 -12.55807 -12.28551 -11.81055 -11.58921 -11.45622 -11.14890 -11.05782 -10.92491 -10.81262 -10.18306 -9.16426 -8.88215 -7.92308 -5.21278 -0.63039 0.59951 1.31093 1.44318 1.45586 1.54057 1.70317 2.00305 2.47621 2.59068 3.28027 3.32423 3.55797 3.56774 3.69146 3.86415 3.97088 4.13734 4.24538 4.34192 4.41278 4.56081 4.63170 4.71047 4.82586 4.85957 4.94466 4.97131 5.01100 5.10118 5.16969 5.26518 5.28741 5.41327 5.55794 5.64922 5.87277 5.96376 6.36980 6.81623 6.93915 6.98631 7.62417 8.63428 9.26388 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021400 B = 0.003513 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.072057 B = 7968.103198 C = 8346.827387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.484 5.484 3 C 0.494 3.506 4 O -0.602 6.602 5 C -0.229 4.229 6 C -0.002 4.002 7 C -0.152 4.152 8 C 0.092 3.908 9 C 0.549 3.451 10 O -0.562 6.562 11 N -0.686 5.686 12 C 0.161 3.839 13 C -0.122 4.122 14 C 0.123 3.877 15 N -0.645 5.645 16 C -0.225 4.225 17 H 0.081 0.919 18 C -0.064 4.064 19 N -0.951 5.951 20 Si 0.969 3.031 21 H -0.286 1.286 22 H -0.270 1.270 23 H -0.297 1.297 24 C 0.159 3.841 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.170 0.830 29 H 0.195 0.805 30 H 0.190 0.810 31 H 0.420 0.580 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.129 0.871 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.247 0.753 38 H 0.025 0.975 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.899 10.726 12.436 19.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.195 5.195 3 C 0.299 3.701 4 O -0.488 6.488 5 C -0.251 4.251 6 C -0.023 4.023 7 C -0.176 4.176 8 C -0.018 4.018 9 C 0.335 3.665 10 O -0.441 6.441 11 N -0.339 5.339 12 C 0.037 3.963 13 C -0.141 4.141 14 C -0.003 4.003 15 N -0.371 5.371 16 C -0.354 4.354 17 H 0.099 0.901 18 C -0.258 4.258 19 N -0.600 5.600 20 Si 0.798 3.202 21 H -0.213 1.213 22 H -0.195 1.195 23 H -0.224 1.224 24 C 0.033 3.967 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.187 0.813 29 H 0.212 0.788 30 H 0.207 0.793 31 H 0.260 0.740 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.147 0.853 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.043 0.957 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 8.413 11.256 12.214 18.619 hybrid contribution -0.657 -0.547 -1.260 1.523 sum 7.755 10.709 10.954 17.170 Atomic orbital electron populations 1.22158 0.76765 1.03673 1.04520 1.45432 1.09902 1.05804 1.58362 1.18019 0.90844 0.81937 0.79350 1.90896 1.71051 1.30588 1.56307 1.22567 0.90598 1.02491 1.09464 1.21920 1.03306 0.89519 0.87601 1.21559 0.89654 1.02516 1.03873 1.20206 0.93530 0.85392 1.02635 1.18093 0.86809 0.84024 0.77567 1.90831 1.15007 1.87524 1.50776 1.45629 1.12018 1.04424 1.71842 1.20832 0.93572 0.80541 1.01313 1.23042 0.99391 0.93536 0.98162 1.22591 0.97849 0.94435 0.85403 1.46104 1.29979 1.56713 1.04336 1.19301 1.01727 1.26824 0.87499 0.90110 1.25509 0.99867 1.02364 0.98014 1.69974 1.29343 1.48767 1.11898 0.85197 0.79238 0.77154 0.78632 1.21330 1.19483 1.22360 1.22133 0.89076 0.92101 0.93356 0.89710 0.89575 0.90389 0.81298 0.78793 0.79314 0.74021 0.94303 0.90331 0.85323 0.93055 0.92674 0.94428 0.95704 0.95041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.93 8.93 127.77 1.14 3.07 16 2 N -0.48 -12.65 3.02 -660.61 -1.99 -14.64 16 3 C 0.49 13.40 7.43 85.00 0.63 14.03 16 4 O -0.60 -21.05 16.40 -5.19 -0.09 -21.14 16 5 C -0.23 -3.94 10.00 22.51 0.23 -3.72 16 6 C 0.00 -0.02 10.08 22.30 0.22 0.20 16 7 C -0.15 -1.84 9.49 22.34 0.21 -1.63 16 8 C 0.09 1.97 6.63 40.45 0.27 2.23 16 9 C 0.55 14.23 7.69 86.80 0.67 14.90 16 10 O -0.56 -18.89 13.22 -3.85 -0.05 -18.94 16 11 N -0.69 -15.10 5.50 -465.95 -2.56 -17.66 16 12 C 0.16 4.65 5.52 86.38 0.48 5.12 16 13 C -0.12 -3.42 4.17 -10.37 -0.04 -3.46 16 14 C 0.12 4.23 8.25 83.17 0.69 4.92 16 15 N -0.64 -30.80 3.61 -738.04 -2.66 -33.47 16 16 C -0.22 -12.32 10.74 84.03 0.90 -11.42 16 17 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 18 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 19 N -0.95 -56.20 11.73 21.65 0.25 -55.94 16 20 Si 0.97 45.67 29.56 68.60 2.03 47.70 16 21 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 24 C 0.16 6.57 6.78 83.26 0.56 7.14 16 25 H 0.08 2.28 7.37 -2.39 -0.02 2.27 16 26 H 0.09 2.40 6.88 -2.39 -0.02 2.38 16 27 H 0.08 2.28 7.07 -2.39 -0.02 2.26 16 28 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.19 0.06 8.06 -2.91 -0.02 0.04 16 30 H 0.19 0.81 6.33 -2.91 -0.02 0.79 16 31 H 0.42 5.85 6.48 -92.71 -0.60 5.25 16 32 H 0.04 1.54 7.93 -2.39 -0.02 1.52 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.05 1.68 8.12 -2.39 -0.02 1.66 16 36 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 38 H 0.03 1.05 8.14 -2.38 -0.02 1.04 16 39 H 0.03 1.49 7.46 -2.39 -0.02 1.48 16 Total: -1.00 -80.24 328.02 1.83 -78.41 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.48 Total: 7.45 kcal Atomic # 6 Polarization: 21.81 SS G_CDS: 6.42 Total: 28.23 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -6.96 Total: -121.71 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -0.14 Total: -40.08 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -80.24 1.83 -78.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031966817.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.599 kcal (2) G-P(sol) polarization free energy of solvation -80.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.78 seconds