Wall clock time and date at job start Tue Mar 31 2020 04:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34784 * 119.99895 * 2 1 4 4 O 1.21620 * 119.99941 * 183.70678 * 3 2 1 5 5 C 1.47285 * 119.99977 * 3.70446 * 3 2 1 6 6 C 1.37989 * 120.88027 * 24.73145 * 5 3 2 7 7 N 1.34348 * 120.37196 * 179.69328 * 6 5 3 8 8 C 1.46495 * 118.80887 * 180.29278 * 7 6 5 9 9 C 1.35587 * 122.38720 * 0.62612 * 7 6 5 10 10 C 1.34861 * 121.79742 * 359.66330 * 9 7 6 11 11 C 1.41670 * 119.34321 * 0.02562 * 10 9 7 12 12 O 1.22083 * 121.06905 * 179.97438 * 11 10 9 13 13 C 1.46493 * 120.00336 * 180.02562 * 2 1 3 14 14 C 1.53500 * 114.20437 * 299.99854 * 13 2 1 15 15 N 1.47067 * 87.98340 * 87.71824 * 14 13 2 16 16 C 1.36941 * 136.05365 * 207.08208 * 15 14 13 17 17 H 1.07989 * 120.00287 * 354.92767 * 16 15 14 18 18 C 1.38814 * 119.99788 * 174.91746 * 16 15 14 19 19 N 1.31613 * 120.00415 * 183.80157 * 18 16 15 20 20 Si 1.86805 * 119.99660 * 3.80267 * 18 16 15 21 21 H 1.48510 * 109.46754 * 174.65800 * 20 18 16 22 22 H 1.48491 * 109.47357 * 294.65448 * 20 18 16 23 23 H 1.48493 * 109.47204 * 54.65990 * 20 18 16 24 24 C 1.47059 * 87.88582 * 27.34218 * 15 14 13 25 25 H 1.08997 * 109.47265 * 264.09632 * 1 2 3 26 26 H 1.09003 * 109.47743 * 24.09767 * 1 2 3 27 27 H 1.09007 * 109.46925 * 144.09555 * 1 2 3 28 28 H 1.08000 * 119.81880 * 359.97438 * 6 5 3 29 29 H 1.09008 * 109.47184 * 270.32514 * 8 7 6 30 30 H 1.09002 * 109.47404 * 30.31920 * 8 7 6 31 31 H 1.09002 * 109.47796 * 150.32744 * 8 7 6 32 32 H 1.08004 * 119.10130 * 179.68908 * 9 7 6 33 33 H 1.08002 * 120.32846 * 179.97438 * 10 9 7 34 34 H 1.09003 * 113.28725 * 166.93355 * 13 2 1 35 35 H 1.09001 * 113.46997 * 332.93899 * 14 13 2 36 36 H 1.09000 * 113.46647 * 202.49716 * 14 13 2 37 37 H 0.97005 * 119.99434 * 5.00716 * 19 18 16 38 38 H 1.09005 * 113.46621 * 87.44068 * 24 15 14 39 39 H 1.09002 * 113.46757 * 217.87481 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3531 1.1684 -0.0681 5 6 1.4047 2.4415 0.0824 6 6 0.1488 2.4997 0.6512 7 7 -0.5092 3.6686 0.7266 8 6 -1.8378 3.6923 1.3432 9 6 0.0091 4.8260 0.2468 10 6 1.2262 4.8735 -0.3321 11 6 1.9881 3.6845 -0.4451 12 8 3.0932 3.6912 -0.9638 13 6 2.1975 -1.2686 -0.0006 14 6 1.9060 -2.1642 1.2115 15 7 0.7773 -2.7295 0.4569 16 6 -0.4240 -3.3093 0.7665 17 1 -0.6792 -3.5056 1.7973 18 6 -1.3139 -3.6446 -0.2447 19 7 -2.4986 -4.1326 0.0562 20 14 -0.8299 -3.4032 -2.0327 21 1 -1.8932 -3.9529 -2.9118 22 1 -0.6600 -1.9540 -2.3082 23 1 0.4479 -4.1110 -2.2995 24 6 1.5095 -2.4040 -0.7762 25 1 -0.3634 -0.1057 1.0222 26 1 -0.3635 0.9381 -0.4196 27 1 -0.3633 -0.8325 -0.6027 28 1 -0.3059 1.6015 1.0421 29 1 -2.5955 3.5104 0.5808 30 1 -1.8978 2.9171 2.1071 31 1 -2.0091 4.6670 1.8002 32 1 -0.5684 5.7348 0.3309 33 1 1.6159 5.8086 -0.7066 34 1 3.2576 -1.1540 -0.2269 35 1 1.6005 -1.6087 2.0983 36 1 2.6958 -2.8867 1.4174 37 1 -2.7781 -4.1903 0.9834 38 1 2.1947 -3.1897 -1.0944 39 1 0.8662 -2.0528 -1.5831 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043302977.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:30 Heat of formation + Delta-G solvation = 73.843244 kcal Electronic energy + Delta-G solvation = -23923.735305 eV Core-core repulsion = 20450.241084 eV Total energy + Delta-G solvation = -3473.494221 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.27831 -39.73743 -38.15620 -37.39611 -34.51014 -32.69024 -32.55438 -31.58313 -28.27630 -27.23182 -26.64421 -25.39714 -24.80853 -23.03137 -22.38088 -20.50286 -18.76446 -17.98405 -17.51508 -17.29891 -16.95052 -16.23790 -15.93939 -15.60805 -14.95486 -14.71915 -14.45079 -14.06188 -13.79973 -13.70846 -13.56710 -13.26345 -13.06317 -12.83018 -12.57017 -12.42651 -12.23011 -11.93024 -11.38057 -11.21667 -10.89228 -10.67128 -10.38626 -9.83391 -9.66638 -9.30071 -9.21808 -9.12062 -8.99251 -8.18172 -7.98522 -7.21865 -6.38976 -3.31588 0.82817 1.22155 2.21840 3.09932 3.25973 3.29384 3.39265 3.57256 3.87001 4.05949 4.25069 4.48673 4.50515 4.61490 4.68534 4.71931 4.94671 5.00868 5.14611 5.19785 5.32961 5.35229 5.50992 5.64000 5.80280 5.86478 5.94332 6.18120 6.20560 6.25704 6.29229 6.36699 6.41033 6.56535 6.61576 7.01751 7.08680 7.82418 8.14469 8.15778 8.61480 8.88887 9.40795 10.29056 11.12367 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018694 B = 0.005407 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.457884 B = 5177.665149 C = 5942.876435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.585 5.585 3 C 0.575 3.425 4 O -0.524 6.524 5 C -0.299 4.299 6 C 0.155 3.845 7 N -0.477 5.477 8 C 0.053 3.947 9 C 0.127 3.873 10 C -0.271 4.271 11 C 0.409 3.591 12 O -0.488 6.488 13 C 0.103 3.897 14 C 0.111 3.889 15 N -0.626 5.626 16 C -0.297 4.297 17 H 0.081 0.919 18 C -0.023 4.023 19 N -0.935 5.935 20 Si 1.067 2.933 21 H -0.296 1.296 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.079 3.921 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.095 0.905 28 H 0.189 0.811 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.163 0.837 33 H 0.152 0.848 34 H 0.108 0.892 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.261 0.739 38 H 0.056 0.944 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.760 18.244 3.008 18.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.317 5.317 3 C 0.364 3.636 4 O -0.400 6.400 5 C -0.309 4.309 6 C 0.026 3.974 7 N -0.164 5.164 8 C -0.088 4.088 9 C 0.002 3.998 10 C -0.295 4.295 11 C 0.295 3.705 12 O -0.369 6.369 13 C -0.002 4.002 14 C -0.017 4.017 15 N -0.356 5.356 16 C -0.424 4.424 17 H 0.099 0.901 18 C -0.222 4.222 19 N -0.578 5.578 20 Si 0.901 3.099 21 H -0.223 1.223 22 H -0.219 1.219 23 H -0.216 1.216 24 C -0.047 4.047 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.113 0.887 28 H 0.206 0.794 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.180 0.820 33 H 0.169 0.831 34 H 0.126 0.874 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.463 17.902 1.294 18.008 hybrid contribution 0.222 -0.009 1.706 1.720 sum -1.241 17.894 3.000 18.186 Atomic orbital electron populations 1.22370 0.79700 1.02919 1.02382 1.47243 1.06798 1.04749 1.72896 1.17510 0.86950 0.82200 0.76953 1.90786 1.13135 1.86679 1.49365 1.22434 0.96369 0.97719 1.14416 1.23456 0.91801 0.89225 0.92947 1.42793 1.17721 1.06288 1.49594 1.22514 0.81232 1.05468 0.99597 1.21709 0.95413 0.89013 0.93640 1.22438 0.96224 1.01586 1.09270 1.18164 0.86983 0.86616 0.78759 1.90800 1.19767 1.87553 1.38795 1.22439 0.95995 0.82729 0.99067 1.22785 0.90504 0.93303 0.95098 1.46277 1.15384 1.72530 1.01364 1.20138 0.89205 1.37901 0.95134 0.90083 1.25592 0.94064 0.98605 1.03903 1.70920 1.19141 1.47074 1.20649 0.83805 0.74620 0.75292 0.76213 1.22318 1.21947 1.21624 1.23280 0.94501 0.94130 0.92779 0.91900 0.91903 0.88689 0.79420 0.89824 0.88795 0.89026 0.81991 0.83061 0.87383 0.93424 0.93339 0.92921 0.92644 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.12 7.70 59.84 0.46 1.59 16 2 N -0.58 -10.71 3.12 -174.88 -0.55 -11.25 16 3 C 0.58 11.12 7.47 -12.58 -0.09 11.02 16 4 O -0.52 -12.12 15.45 -12.17 -0.19 -12.30 16 5 C -0.30 -4.75 5.69 -102.72 -0.58 -5.33 16 6 C 0.16 1.70 7.80 -16.54 -0.13 1.57 16 7 N -0.48 -3.52 2.97 -124.39 -0.37 -3.89 16 8 C 0.05 0.16 10.52 59.84 0.63 0.79 16 9 C 0.13 0.90 10.17 -17.09 -0.17 0.72 16 10 C -0.27 -3.01 10.01 -39.47 -0.40 -3.40 16 11 C 0.41 6.88 6.94 -34.68 -0.24 6.64 16 12 O -0.49 -10.56 16.70 -12.59 -0.21 -10.78 16 13 C 0.10 1.97 4.69 -67.68 -0.32 1.65 16 14 C 0.11 2.17 8.31 -8.51 -0.07 2.10 16 15 N -0.63 -14.42 2.43 -184.63 -0.45 -14.87 16 16 C -0.30 -7.91 10.92 -15.06 -0.16 -8.07 16 17 H 0.08 2.30 8.05 -52.49 -0.42 1.88 16 18 C -0.02 -0.64 5.50 -17.43 -0.10 -0.73 16 19 N -0.94 -27.79 13.70 55.49 0.76 -27.03 16 20 Si 1.07 25.63 24.23 -169.99 -4.12 21.51 16 21 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.29 -6.40 5.52 56.52 0.31 -6.09 16 23 H -0.29 -6.74 6.69 56.52 0.38 -6.36 16 24 C 0.08 1.66 5.01 -8.38 -0.04 1.62 16 25 H 0.06 0.97 7.26 -51.93 -0.38 0.59 16 26 H 0.06 0.84 4.98 -51.93 -0.26 0.58 16 27 H 0.09 1.88 4.07 -51.92 -0.21 1.67 16 28 H 0.19 1.85 4.36 -52.49 -0.23 1.62 16 29 H 0.08 0.19 8.14 -51.92 -0.42 -0.23 16 30 H 0.09 0.24 7.97 -51.93 -0.41 -0.17 16 31 H 0.09 0.06 7.96 -51.93 -0.41 -0.35 16 32 H 0.16 0.40 7.97 -52.48 -0.42 -0.01 16 33 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.11 2.03 7.27 -51.93 -0.38 1.66 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.26 7.64 8.73 -40.82 -0.36 7.29 16 38 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 39 H 0.06 1.27 3.31 -51.93 -0.17 1.10 16 LS Contribution 311.13 15.07 4.69 4.69 Total: -1.00 -38.53 311.13 -6.32 -44.84 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -4.67 Total: -1.08 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -1.22 Total: 10.15 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.60 Total: -57.03 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.40 Total: -23.08 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -4.12 Total: 21.51 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -38.53 -6.32 -44.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043302977.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.684 kcal (2) G-P(sol) polarization free energy of solvation -38.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds