Wall clock time and date at job start Tue Mar 31 2020 04:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34784 * 119.99895 * 2 1 4 4 O 1.21620 * 119.99941 * 183.70678 * 3 2 1 5 5 C 1.47285 * 119.99977 * 3.70446 * 3 2 1 6 6 C 1.37989 * 120.88027 * 24.73145 * 5 3 2 7 7 N 1.34348 * 120.37196 * 179.69328 * 6 5 3 8 8 C 1.46495 * 118.80887 * 180.29278 * 7 6 5 9 9 C 1.35587 * 122.38720 * 0.62612 * 7 6 5 10 10 C 1.34861 * 121.79742 * 359.66330 * 9 7 6 11 11 C 1.41670 * 119.34321 * 0.02562 * 10 9 7 12 12 O 1.22083 * 121.06905 * 179.97438 * 11 10 9 13 13 C 1.46493 * 120.00336 * 180.02562 * 2 1 3 14 14 C 1.53500 * 114.20437 * 299.99854 * 13 2 1 15 15 N 1.47067 * 87.98340 * 87.71824 * 14 13 2 16 16 C 1.36941 * 136.05365 * 207.08208 * 15 14 13 17 17 H 1.07989 * 120.00287 * 354.92767 * 16 15 14 18 18 C 1.38814 * 119.99788 * 174.91746 * 16 15 14 19 19 N 1.31613 * 120.00415 * 183.80157 * 18 16 15 20 20 Si 1.86805 * 119.99660 * 3.80267 * 18 16 15 21 21 H 1.48510 * 109.46754 * 174.65800 * 20 18 16 22 22 H 1.48491 * 109.47357 * 294.65448 * 20 18 16 23 23 H 1.48493 * 109.47204 * 54.65990 * 20 18 16 24 24 C 1.47059 * 87.88582 * 27.34218 * 15 14 13 25 25 H 1.08997 * 109.47265 * 264.09632 * 1 2 3 26 26 H 1.09003 * 109.47743 * 24.09767 * 1 2 3 27 27 H 1.09007 * 109.46925 * 144.09555 * 1 2 3 28 28 H 1.08000 * 119.81880 * 359.97438 * 6 5 3 29 29 H 1.09008 * 109.47184 * 270.32514 * 8 7 6 30 30 H 1.09002 * 109.47404 * 30.31920 * 8 7 6 31 31 H 1.09002 * 109.47796 * 150.32744 * 8 7 6 32 32 H 1.08004 * 119.10130 * 179.68908 * 9 7 6 33 33 H 1.08002 * 120.32846 * 179.97438 * 10 9 7 34 34 H 1.09003 * 113.28725 * 166.93355 * 13 2 1 35 35 H 1.09001 * 113.46997 * 332.93899 * 14 13 2 36 36 H 1.09000 * 113.46647 * 202.49716 * 14 13 2 37 37 H 0.97005 * 119.99434 * 5.00716 * 19 18 16 38 38 H 1.09005 * 113.46621 * 87.44068 * 24 15 14 39 39 H 1.09002 * 113.46757 * 217.87481 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3531 1.1684 -0.0681 5 6 1.4047 2.4415 0.0824 6 6 0.1488 2.4997 0.6512 7 7 -0.5092 3.6686 0.7266 8 6 -1.8378 3.6923 1.3432 9 6 0.0091 4.8260 0.2468 10 6 1.2262 4.8735 -0.3321 11 6 1.9881 3.6845 -0.4451 12 8 3.0932 3.6912 -0.9638 13 6 2.1975 -1.2686 -0.0006 14 6 1.9060 -2.1642 1.2115 15 7 0.7773 -2.7295 0.4569 16 6 -0.4240 -3.3093 0.7665 17 1 -0.6792 -3.5056 1.7973 18 6 -1.3139 -3.6446 -0.2447 19 7 -2.4986 -4.1326 0.0562 20 14 -0.8299 -3.4032 -2.0327 21 1 -1.8932 -3.9529 -2.9118 22 1 -0.6600 -1.9540 -2.3082 23 1 0.4479 -4.1110 -2.2995 24 6 1.5095 -2.4040 -0.7762 25 1 -0.3634 -0.1057 1.0222 26 1 -0.3635 0.9381 -0.4196 27 1 -0.3633 -0.8325 -0.6027 28 1 -0.3059 1.6015 1.0421 29 1 -2.5955 3.5104 0.5808 30 1 -1.8978 2.9171 2.1071 31 1 -2.0091 4.6670 1.8002 32 1 -0.5684 5.7348 0.3309 33 1 1.6159 5.8086 -0.7066 34 1 3.2576 -1.1540 -0.2269 35 1 1.6005 -1.6087 2.0983 36 1 2.6958 -2.8867 1.4174 37 1 -2.7781 -4.1903 0.9834 38 1 2.1947 -3.1897 -1.0944 39 1 0.8662 -2.0528 -1.5831 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043302977.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:29 Heat of formation + Delta-G solvation = 45.428592 kcal Electronic energy + Delta-G solvation = -23924.967457 eV Core-core repulsion = 20450.241084 eV Total energy + Delta-G solvation = -3474.726372 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.28468 -41.14002 -39.50365 -38.74398 -35.98818 -34.55083 -33.46722 -32.74729 -30.03326 -28.22942 -27.65150 -27.04944 -25.96822 -24.27893 -23.76443 -21.94169 -20.32523 -19.48488 -18.96837 -18.31745 -17.93687 -17.69297 -17.08213 -16.66620 -16.23447 -16.14832 -15.80974 -15.50141 -15.38299 -15.08300 -14.85735 -14.55230 -14.20386 -13.97715 -13.57234 -13.47558 -13.27669 -13.22642 -12.74741 -12.62777 -12.62077 -12.33336 -12.15950 -11.30524 -11.17077 -11.07406 -10.99217 -10.63062 -10.35716 -9.65690 -9.17776 -9.03600 -8.56490 -5.42091 -0.17181 0.37717 1.37618 1.47340 1.53232 1.66258 1.75877 1.93980 2.52087 2.74874 2.94633 3.24374 3.31276 3.47085 3.61129 3.79103 3.89256 4.01933 4.13161 4.24310 4.34883 4.42358 4.50488 4.56133 4.60439 4.61854 4.65908 4.76683 4.81299 4.82038 4.90005 5.02836 5.18250 5.28722 5.60382 5.69862 5.82906 5.99031 6.41195 6.74581 7.07022 7.19692 7.35009 8.29738 8.97708 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018694 B = 0.005407 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.457884 B = 5177.665149 C = 5942.876435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.586 5.586 3 C 0.571 3.429 4 O -0.576 6.576 5 C -0.351 4.351 6 C 0.195 3.805 7 N -0.460 5.460 8 C 0.039 3.961 9 C 0.167 3.833 10 C -0.298 4.298 11 C 0.385 3.615 12 O -0.570 6.570 13 C 0.112 3.888 14 C 0.116 3.884 15 N -0.643 5.643 16 C -0.275 4.275 17 H 0.056 0.944 18 C -0.068 4.068 19 N -0.971 5.971 20 Si 1.096 2.904 21 H -0.308 1.308 22 H -0.263 1.263 23 H -0.280 1.280 24 C 0.077 3.923 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.204 0.796 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.130 0.870 32 H 0.229 0.771 33 H 0.164 0.836 34 H 0.110 0.890 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.250 0.750 38 H 0.068 0.932 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.053 20.891 3.778 21.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.317 5.317 3 C 0.363 3.637 4 O -0.456 6.456 5 C -0.362 4.362 6 C 0.060 3.940 7 N -0.142 5.142 8 C -0.100 4.100 9 C 0.042 3.958 10 C -0.321 4.321 11 C 0.279 3.721 12 O -0.459 6.459 13 C 0.006 3.994 14 C -0.011 4.011 15 N -0.372 5.372 16 C -0.402 4.402 17 H 0.074 0.926 18 C -0.261 4.261 19 N -0.616 5.616 20 Si 0.925 3.075 21 H -0.237 1.237 22 H -0.190 1.190 23 H -0.206 1.206 24 C -0.049 4.049 25 H 0.093 0.907 26 H 0.112 0.888 27 H 0.083 0.917 28 H 0.220 0.780 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.148 0.852 32 H 0.245 0.755 33 H 0.181 0.819 34 H 0.127 0.873 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.804 20.597 2.110 21.051 hybrid contribution 0.764 -0.765 1.651 1.974 sum -3.040 19.832 3.760 20.413 Atomic orbital electron populations 1.22437 0.78442 1.03276 1.02785 1.47323 1.07516 1.04242 1.72661 1.18077 0.86616 0.83332 0.75650 1.90739 1.15498 1.87443 1.51939 1.22139 0.98848 0.96023 1.19176 1.23456 0.89749 0.91124 0.89622 1.43414 1.18753 1.05248 1.46828 1.23042 0.78289 1.08287 1.00370 1.22538 0.93806 0.90456 0.89032 1.22370 0.97746 0.99928 1.12086 1.18953 0.86649 0.88695 0.77849 1.90749 1.23063 1.88692 1.43435 1.22276 0.96144 0.82798 0.98157 1.22898 0.89551 0.93397 0.95247 1.46233 1.15436 1.72293 1.03266 1.19944 0.90480 1.35985 0.93833 0.92597 1.26507 0.93768 0.98954 1.06852 1.71004 1.20731 1.50008 1.19891 0.83449 0.74284 0.76991 0.72741 1.23674 1.18960 1.20585 1.23406 0.94369 0.95012 0.92064 0.90702 0.88802 0.91682 0.77953 0.88024 0.87954 0.85178 0.75462 0.81870 0.87258 0.92931 0.91671 0.94098 0.91454 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.22 7.70 127.77 0.98 3.21 16 2 N -0.59 -21.10 3.12 -825.44 -2.57 -23.68 16 3 C 0.57 22.52 7.47 86.62 0.65 23.17 16 4 O -0.58 -28.09 15.45 12.58 0.19 -27.90 16 5 C -0.35 -11.02 5.69 -18.63 -0.11 -11.12 16 6 C 0.19 3.59 7.80 84.25 0.66 4.25 16 7 N -0.46 -4.15 2.97 -547.46 -1.63 -5.78 16 8 C 0.04 -0.04 10.52 127.77 1.34 1.30 16 9 C 0.17 1.41 10.17 83.34 0.85 2.26 16 10 C -0.30 -5.99 10.01 22.34 0.22 -5.77 16 11 C 0.39 13.30 6.94 25.44 0.18 13.48 16 12 O -0.57 -26.68 16.70 11.08 0.19 -26.50 16 13 C 0.11 4.22 4.69 45.55 0.21 4.43 16 14 C 0.12 4.39 8.31 83.18 0.69 5.09 16 15 N -0.64 -28.94 2.43 -738.05 -1.80 -30.74 16 16 C -0.28 -14.58 10.92 84.03 0.92 -13.66 16 17 H 0.06 3.21 8.05 -2.92 -0.02 3.19 16 18 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 19 N -0.97 -58.36 13.70 21.65 0.30 -58.06 16 20 Si 1.10 51.16 24.23 68.60 1.66 52.82 16 21 H -0.31 -14.96 7.11 99.48 0.71 -14.26 16 22 H -0.26 -10.95 5.52 99.48 0.55 -10.40 16 23 H -0.28 -12.48 6.69 99.48 0.67 -11.81 16 24 C 0.08 3.13 5.01 83.26 0.42 3.55 16 25 H 0.07 2.10 7.26 -2.39 -0.02 2.09 16 26 H 0.09 2.23 4.98 -2.39 -0.01 2.22 16 27 H 0.06 2.46 4.07 -2.38 -0.01 2.45 16 28 H 0.20 3.17 4.36 -2.91 -0.01 3.16 16 29 H 0.10 -0.28 8.14 -2.38 -0.02 -0.29 16 30 H 0.10 -0.14 7.97 -2.39 -0.02 -0.16 16 31 H 0.13 -0.96 7.96 -2.39 -0.02 -0.98 16 32 H 0.23 -0.89 7.97 -2.91 -0.02 -0.91 16 33 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 34 H 0.11 4.14 7.27 -2.39 -0.02 4.12 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.25 14.99 8.73 -92.70 -0.81 14.18 16 38 H 0.07 2.62 8.08 -2.38 -0.02 2.60 16 39 H 0.05 2.27 3.31 -2.39 -0.01 2.26 16 Total: -1.00 -93.19 311.13 4.68 -88.51 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 0.85 Total: 4.42 kcal Atomic # 6 Polarization: 19.42 SS G_CDS: 7.48 Total: 26.90 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -5.70 Total: -118.25 kcal Atomic # 8 Polarization: -54.78 SS G_CDS: 0.38 Total: -54.40 kcal Atomic # 14 Polarization: 51.16 SS G_CDS: 1.66 Total: 52.82 kcal Total: -93.19 4.68 -88.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043302977.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.940 kcal (2) G-P(sol) polarization free energy of solvation -93.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds