Wall clock time and date at job start Tue Mar 31 2020 02:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30014 * 127.33549 * 2 1 4 4 O 1.20653 * 112.30408 * 180.02562 * 3 2 1 5 5 C 1.33495 * 113.15885 * 359.71900 * 4 3 2 6 6 C 1.37365 * 106.33477 * 0.45044 * 5 4 3 7 7 C 1.47397 * 128.56090 * 179.85679 * 6 5 4 8 8 O 1.21609 * 120.00154 * 187.50573 * 7 6 5 9 9 N 1.34780 * 120.00042 * 7.50073 * 7 6 5 10 10 C 1.47345 * 125.52939 * 357.60374 * 9 7 6 11 11 C 1.56791 * 105.03259 * 156.53370 * 10 9 7 12 12 C 1.54810 * 100.66586 * 37.18020 * 11 10 9 13 13 H 1.08994 * 112.63781 * 85.70226 * 12 11 10 14 14 C 1.53266 * 109.74570 * 211.98684 * 12 11 10 15 15 N 1.46584 * 108.15667 * 96.44356 * 14 12 11 16 16 C 1.36941 * 125.30347 * 177.85602 * 15 14 12 17 17 H 1.07999 * 120.00060 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99702 * 179.97438 * 16 15 14 19 19 N 1.31611 * 119.99996 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99451 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46991 * 90.00936 * 20 18 16 22 22 H 1.48500 * 109.46647 * 210.00123 * 20 18 16 23 23 H 1.48493 * 109.47220 * 330.00141 * 20 18 16 24 24 C 1.46600 * 109.39061 * 357.88791 * 15 14 12 25 25 C 1.47218 * 125.52720 * 177.64030 * 9 7 6 26 26 H 1.08997 * 112.72300 * 55.94534 * 25 9 7 27 27 H 1.09002 * 109.47306 * 269.95305 * 1 2 3 28 28 H 1.09002 * 109.47325 * 29.95442 * 1 2 3 29 29 H 1.09006 * 109.46662 * 149.95606 * 1 2 3 30 30 H 1.07995 * 126.83290 * 180.31013 * 5 4 3 31 31 H 1.08994 * 110.35927 * 275.43127 * 10 9 7 32 32 H 1.09007 * 110.35636 * 37.61658 * 10 9 7 33 33 H 1.08994 * 111.10268 * 279.54284 * 11 10 9 34 34 H 1.09004 * 111.72297 * 155.07734 * 11 10 9 35 35 H 1.09001 * 109.73251 * 216.12643 * 14 12 11 36 36 H 1.09002 * 109.74050 * 336.75870 * 14 12 11 37 37 H 0.97000 * 119.99777 * 179.97438 * 19 18 16 38 38 H 1.09002 * 109.91765 * 137.16692 * 24 15 14 39 39 H 1.09004 * 109.91489 * 258.25875 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4607 0.7208 -0.0005 5 6 3.6494 -0.6007 0.0051 6 6 2.3991 -1.1696 -0.0007 7 6 2.0401 -2.5991 -0.0010 8 8 0.8800 -2.9347 -0.1441 9 7 2.9975 -3.5344 0.1573 10 6 4.4407 -3.2686 0.2897 11 6 5.0181 -4.5207 1.0361 12 6 4.1643 -5.6483 0.4069 13 1 4.5822 -6.0182 -0.5293 14 6 3.9422 -6.7641 1.4339 15 7 2.6397 -6.5467 2.0701 16 6 2.0733 -7.3628 3.0128 17 1 2.5947 -8.2490 3.3433 18 6 0.8296 -7.0503 3.5443 19 7 0.1946 -5.9700 3.1418 20 14 0.0574 -8.1631 4.8307 21 1 0.4720 -7.7162 6.1848 22 1 -1.4219 -8.0966 4.7189 23 1 0.5081 -9.5608 4.6109 24 6 2.0375 -5.3200 1.5394 25 6 2.7711 -4.9875 0.2252 26 1 2.2389 -5.3718 -0.6450 27 1 -0.3634 -0.0008 1.0277 28 1 -0.3634 0.8904 -0.5131 29 1 -0.3633 -0.8897 -0.5146 30 1 4.5967 -1.1194 0.0105 31 1 4.8998 -3.1692 -0.6939 32 1 4.6077 -2.3663 0.8781 33 1 4.8446 -4.4519 2.1100 34 1 6.0769 -4.6657 0.8213 35 1 3.9503 -7.7322 0.9330 36 1 4.7295 -6.7332 2.1871 37 1 -0.6747 -5.7519 3.5129 38 1 0.9777 -5.4818 1.3423 39 1 2.1621 -4.5061 2.2537 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076196664.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:32 Heat of formation + Delta-G solvation = 75.383944 kcal Electronic energy + Delta-G solvation = -23951.781234 eV Core-core repulsion = 20478.353823 eV Total energy + Delta-G solvation = -3473.427411 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -44.92469 -40.11715 -37.84502 -35.10652 -34.42571 -32.74167 -31.74312 -30.71444 -28.91707 -28.44559 -26.95596 -24.80055 -24.42087 -22.59826 -21.38652 -20.53963 -19.89631 -19.05293 -17.74982 -17.49059 -16.97074 -16.54086 -15.65936 -15.56300 -14.63756 -14.38575 -14.14705 -13.61679 -13.38232 -13.27085 -13.18981 -12.84844 -12.61730 -12.43847 -12.21234 -11.96064 -11.63713 -11.35652 -11.27867 -11.07612 -10.80959 -10.47027 -10.25228 -10.07884 -9.90582 -9.82829 -9.76399 -9.74470 -9.67574 -8.61247 -8.32236 -6.84250 -5.64538 -3.06758 1.07263 1.79928 2.77358 3.26747 3.40794 3.43346 3.45370 3.48346 4.02978 4.27996 4.48565 4.54809 4.62093 4.84849 4.89704 5.11148 5.30895 5.32500 5.38736 5.52961 5.55020 5.59666 5.60854 5.73315 5.74468 5.86066 5.93974 6.15472 6.22168 6.23563 6.46144 6.51423 6.61599 6.81916 7.47978 7.61996 7.78068 7.92379 8.15746 8.34083 8.43505 9.22694 9.83650 10.45101 11.40013 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019047 B = 0.004996 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.701403 B = 5602.916852 C = 6624.470239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.071 3.929 3 N -0.364 5.364 4 O 0.092 5.908 5 C -0.029 4.029 6 C -0.237 4.237 7 C 0.603 3.397 8 O -0.513 6.513 9 N -0.599 5.599 10 C 0.085 3.915 11 C -0.120 4.120 12 C -0.110 4.110 13 H 0.088 0.912 14 C 0.144 3.856 15 N -0.601 5.601 16 C -0.233 4.233 17 H 0.079 0.921 18 C -0.006 4.006 19 N -0.914 5.914 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.164 3.836 25 C 0.117 3.883 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.232 0.768 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.024 0.976 36 H 0.026 0.974 37 H 0.253 0.747 38 H 0.097 0.903 39 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.386 9.396 -8.158 16.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.092 4.092 3 N -0.073 5.073 4 O 0.033 5.967 5 C -0.110 4.110 6 C -0.244 4.244 7 C 0.391 3.609 8 O -0.389 6.389 9 N -0.333 5.333 10 C -0.038 4.038 11 C -0.158 4.158 12 C -0.129 4.129 13 H 0.107 0.893 14 C 0.018 3.982 15 N -0.328 5.328 16 C -0.361 4.361 17 H 0.097 0.903 18 C -0.203 4.203 19 N -0.561 5.561 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.039 3.961 25 C 0.014 3.986 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.117 0.883 30 H 0.248 0.752 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.042 0.958 36 H 0.044 0.956 37 H 0.064 0.936 38 H 0.115 0.885 39 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 9.303 10.574 -8.122 16.258 hybrid contribution -0.251 -1.360 0.783 1.590 sum 9.053 9.213 -7.339 14.856 Atomic orbital electron populations 1.20303 0.84812 1.04391 1.04155 1.24876 0.99023 0.86257 0.99011 1.73636 0.89333 1.23689 1.20616 1.84545 1.21562 1.23275 1.67358 1.27125 1.00833 0.83832 0.99219 1.22442 0.92723 0.95815 1.13442 1.16380 0.84655 0.82315 0.77568 1.90838 1.17859 1.81193 1.49032 1.48245 1.06241 1.07143 1.71712 1.22995 0.81549 0.99360 0.99919 1.23115 0.98884 0.92894 1.00870 1.22884 0.94780 0.96195 0.99090 0.89344 1.20998 0.89747 0.94658 0.92801 1.44148 1.15776 1.26216 1.46655 1.19022 1.00096 1.03403 1.13614 0.90324 1.24848 0.97452 0.97843 1.00168 1.69911 1.15345 1.25616 1.45254 0.86107 0.78593 0.79771 0.81198 1.21638 1.21615 1.20629 1.21669 0.98831 0.87794 0.87847 1.22970 0.96638 0.77108 1.01894 0.89599 0.89628 0.90608 0.88270 0.75195 0.91062 0.90712 0.89719 0.89918 0.95779 0.95630 0.93592 0.88514 0.96244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.20 36.00 0.37 -0.68 16 2 C 0.07 1.05 7.58 -79.77 -0.60 0.45 16 3 N -0.36 -5.20 12.01 34.78 0.42 -4.78 16 4 O 0.09 1.12 11.06 18.65 0.21 1.33 16 5 C -0.03 -0.31 10.69 30.41 0.33 0.01 16 6 C -0.24 -3.52 6.38 -102.89 -0.66 -4.17 16 7 C 0.60 10.88 7.66 -12.53 -0.10 10.79 16 8 O -0.51 -11.24 15.84 5.27 0.08 -11.16 16 9 N -0.60 -9.83 2.89 -161.75 -0.47 -10.30 16 10 C 0.08 0.95 5.45 -1.53 -0.01 0.94 16 11 C -0.12 -1.48 6.38 -23.73 -0.15 -1.63 16 12 C -0.11 -1.70 3.85 -88.33 -0.34 -2.04 16 13 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 14 C 0.14 2.81 6.66 -3.86 -0.03 2.79 16 15 N -0.60 -15.17 3.37 -172.22 -0.58 -15.75 16 16 C -0.23 -6.47 10.25 -15.06 -0.15 -6.63 16 17 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 18 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 19 N -0.91 -27.49 10.17 55.49 0.56 -26.92 16 20 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.16 4.07 4.89 -3.39 -0.02 4.05 16 25 C 0.12 2.22 3.83 -65.74 -0.25 1.97 16 26 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 27 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.10 1.43 7.01 -51.93 -0.36 1.07 16 30 H 0.23 1.54 5.06 -52.49 -0.27 1.28 16 31 H 0.07 0.60 8.12 -51.93 -0.42 0.17 16 32 H 0.07 0.69 5.26 -51.93 -0.27 0.42 16 33 H 0.08 1.26 7.89 -51.93 -0.41 0.85 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.03 0.49 7.73 -51.93 -0.40 0.09 16 37 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.10 2.83 6.23 -51.93 -0.32 2.51 16 39 H 0.02 0.54 7.97 -51.93 -0.41 0.12 16 LS Contribution 315.78 15.07 4.76 4.76 Total: -1.00 -34.20 315.78 -6.71 -40.91 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -4.95 Total: -0.86 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -1.71 Total: 5.56 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.07 Total: -57.76 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.29 Total: -9.83 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.20 -6.71 -40.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076196664.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.292 kcal (2) G-P(sol) polarization free energy of solvation -34.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds