Wall clock time and date at job start Tue Mar 31 2020 02:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30014 * 127.33549 * 2 1 4 4 O 1.20653 * 112.30408 * 180.02562 * 3 2 1 5 5 C 1.33495 * 113.15885 * 359.71900 * 4 3 2 6 6 C 1.37365 * 106.33477 * 0.45044 * 5 4 3 7 7 C 1.47397 * 128.56090 * 179.85679 * 6 5 4 8 8 O 1.21609 * 120.00154 * 187.50573 * 7 6 5 9 9 N 1.34780 * 120.00042 * 7.50073 * 7 6 5 10 10 C 1.47345 * 125.52939 * 357.60374 * 9 7 6 11 11 C 1.56791 * 105.03259 * 156.53370 * 10 9 7 12 12 C 1.54810 * 100.66586 * 37.18020 * 11 10 9 13 13 H 1.08994 * 112.63781 * 85.70226 * 12 11 10 14 14 C 1.53266 * 109.74570 * 211.98684 * 12 11 10 15 15 N 1.46584 * 108.15667 * 96.44356 * 14 12 11 16 16 C 1.36941 * 125.30347 * 177.85602 * 15 14 12 17 17 H 1.07999 * 120.00060 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99702 * 179.97438 * 16 15 14 19 19 N 1.31611 * 119.99996 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99451 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46991 * 90.00936 * 20 18 16 22 22 H 1.48500 * 109.46647 * 210.00123 * 20 18 16 23 23 H 1.48493 * 109.47220 * 330.00141 * 20 18 16 24 24 C 1.46600 * 109.39061 * 357.88791 * 15 14 12 25 25 C 1.47218 * 125.52720 * 177.64030 * 9 7 6 26 26 H 1.08997 * 112.72300 * 55.94534 * 25 9 7 27 27 H 1.09002 * 109.47306 * 269.95305 * 1 2 3 28 28 H 1.09002 * 109.47325 * 29.95442 * 1 2 3 29 29 H 1.09006 * 109.46662 * 149.95606 * 1 2 3 30 30 H 1.07995 * 126.83290 * 180.31013 * 5 4 3 31 31 H 1.08994 * 110.35927 * 275.43127 * 10 9 7 32 32 H 1.09007 * 110.35636 * 37.61658 * 10 9 7 33 33 H 1.08994 * 111.10268 * 279.54284 * 11 10 9 34 34 H 1.09004 * 111.72297 * 155.07734 * 11 10 9 35 35 H 1.09001 * 109.73251 * 216.12643 * 14 12 11 36 36 H 1.09002 * 109.74050 * 336.75870 * 14 12 11 37 37 H 0.97000 * 119.99777 * 179.97438 * 19 18 16 38 38 H 1.09002 * 109.91765 * 137.16692 * 24 15 14 39 39 H 1.09004 * 109.91489 * 258.25875 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4607 0.7208 -0.0005 5 6 3.6494 -0.6007 0.0051 6 6 2.3991 -1.1696 -0.0007 7 6 2.0401 -2.5991 -0.0010 8 8 0.8800 -2.9347 -0.1441 9 7 2.9975 -3.5344 0.1573 10 6 4.4407 -3.2686 0.2897 11 6 5.0181 -4.5207 1.0361 12 6 4.1643 -5.6483 0.4069 13 1 4.5822 -6.0182 -0.5293 14 6 3.9422 -6.7641 1.4339 15 7 2.6397 -6.5467 2.0701 16 6 2.0733 -7.3628 3.0128 17 1 2.5947 -8.2490 3.3433 18 6 0.8296 -7.0503 3.5443 19 7 0.1946 -5.9700 3.1418 20 14 0.0574 -8.1631 4.8307 21 1 0.4720 -7.7162 6.1848 22 1 -1.4219 -8.0966 4.7189 23 1 0.5081 -9.5608 4.6109 24 6 2.0375 -5.3200 1.5394 25 6 2.7711 -4.9875 0.2252 26 1 2.2389 -5.3718 -0.6450 27 1 -0.3634 -0.0008 1.0277 28 1 -0.3634 0.8904 -0.5131 29 1 -0.3633 -0.8897 -0.5146 30 1 4.5967 -1.1194 0.0105 31 1 4.8998 -3.1692 -0.6939 32 1 4.6077 -2.3663 0.8781 33 1 4.8446 -4.4519 2.1100 34 1 6.0769 -4.6657 0.8213 35 1 3.9503 -7.7322 0.9330 36 1 4.7295 -6.7332 2.1871 37 1 -0.6747 -5.7519 3.5129 38 1 0.9777 -5.4818 1.3423 39 1 2.1621 -4.5061 2.2537 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076196664.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:30 Heat of formation + Delta-G solvation = 51.162320 kcal Electronic energy + Delta-G solvation = -23952.831563 eV Core-core repulsion = 20478.353823 eV Total energy + Delta-G solvation = -3474.477739 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -45.99588 -41.47723 -39.31960 -36.72980 -35.52473 -34.35159 -33.09514 -32.18793 -30.39971 -29.71172 -28.45819 -26.58847 -25.76519 -23.72855 -22.72605 -21.91504 -21.27332 -20.45712 -18.93174 -18.81249 -18.58919 -17.81155 -17.13180 -16.95163 -16.35943 -15.79546 -15.50155 -15.05804 -14.94285 -14.44990 -14.37795 -14.19961 -14.02475 -13.78363 -13.57887 -13.27843 -13.19616 -12.96538 -12.80524 -12.61005 -12.39851 -12.16607 -11.87229 -11.66495 -11.47607 -11.40185 -11.16659 -10.98158 -10.79807 -10.74460 -9.68573 -8.91536 -7.80334 -5.25080 0.05906 0.67983 1.42579 1.45390 1.54538 1.63164 2.14099 2.23943 2.47671 2.94418 3.27251 3.30824 3.40352 3.55630 3.73444 3.81133 3.86677 4.04176 4.27043 4.33968 4.37291 4.47027 4.50340 4.54354 4.55534 4.67891 4.72115 4.84507 4.96451 5.11058 5.12692 5.19657 5.20399 5.46758 5.50450 5.57205 5.80353 6.24332 6.49356 7.04315 7.09570 7.17129 7.78456 8.38078 9.22001 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019047 B = 0.004996 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.701403 B = 5602.916852 C = 6624.470239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.051 3.949 3 N -0.374 5.374 4 O 0.104 5.896 5 C 0.021 3.979 6 C -0.274 4.274 7 C 0.596 3.404 8 O -0.573 6.573 9 N -0.600 5.600 10 C 0.077 3.923 11 C -0.111 4.111 12 C -0.093 4.093 13 H 0.133 0.867 14 C 0.134 3.866 15 N -0.624 5.624 16 C -0.241 4.241 17 H 0.089 0.911 18 C -0.071 4.071 19 N -0.950 5.950 20 Si 0.980 3.020 21 H -0.285 1.285 22 H -0.299 1.299 23 H -0.262 1.262 24 C 0.183 3.817 25 C 0.122 3.878 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.282 0.718 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.052 0.948 34 H 0.135 0.865 35 H 0.031 0.969 36 H 0.038 0.962 37 H 0.242 0.758 38 H 0.038 0.962 39 H -0.023 1.023 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.671 9.731 -9.064 19.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 N -0.082 5.082 4 O 0.045 5.955 5 C -0.061 4.061 6 C -0.282 4.282 7 C 0.386 3.614 8 O -0.454 6.454 9 N -0.333 5.333 10 C -0.044 4.044 11 C -0.149 4.149 12 C -0.112 4.112 13 H 0.151 0.849 14 C 0.009 3.991 15 N -0.351 5.351 16 C -0.370 4.370 17 H 0.107 0.893 18 C -0.264 4.264 19 N -0.600 5.600 20 Si 0.808 3.192 21 H -0.212 1.212 22 H -0.226 1.226 23 H -0.186 1.186 24 C 0.056 3.944 25 C 0.017 3.983 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.116 0.884 29 H 0.097 0.903 30 H 0.296 0.704 31 H 0.140 0.860 32 H 0.117 0.883 33 H 0.071 0.929 34 H 0.153 0.847 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.056 0.944 39 H -0.005 1.005 Dipole moment (debyes) X Y Z Total from point charges 13.673 10.909 -9.038 19.688 hybrid contribution -1.501 -1.492 1.077 2.375 sum 12.172 9.416 -7.961 17.326 Atomic orbital electron populations 1.20260 0.84851 1.04444 1.03963 1.25090 0.99643 0.86751 0.99602 1.73641 0.89887 1.23548 1.21086 1.84538 1.20647 1.23862 1.66448 1.27833 1.00861 0.82793 0.94585 1.22165 0.94714 0.94016 1.17273 1.16883 0.84173 0.83804 0.76575 1.90804 1.20411 1.82321 1.51823 1.48304 1.08612 1.05595 1.70738 1.23488 0.77980 0.99872 1.03033 1.23152 1.01226 0.91652 0.98848 1.22944 0.92920 0.95335 0.99981 0.84924 1.21312 0.87114 0.96739 0.93886 1.44467 1.18192 1.25858 1.46572 1.19504 1.00167 1.03763 1.13577 0.89277 1.25762 0.98381 0.99445 1.02796 1.70255 1.15163 1.27775 1.46767 0.85047 0.76860 0.78759 0.78506 1.21239 1.22576 1.18645 1.21168 0.96724 0.86580 0.89895 1.22616 0.98437 0.79598 0.97642 0.90975 0.89973 0.88420 0.90266 0.70362 0.85964 0.88288 0.92894 0.84683 0.95133 0.94369 0.94844 0.94403 1.00463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.18 10.20 71.23 0.73 -1.46 16 2 C 0.05 1.51 7.58 45.15 0.34 1.86 16 3 N -0.37 -10.06 12.01 -44.79 -0.54 -10.60 16 4 O 0.10 2.20 11.06 76.97 0.85 3.05 16 5 C 0.02 0.37 10.69 67.61 0.72 1.09 16 6 C -0.27 -7.85 6.38 -18.74 -0.12 -7.97 16 7 C 0.60 21.96 7.66 86.65 0.66 22.62 16 8 O -0.57 -27.16 15.84 -4.06 -0.06 -27.23 16 9 N -0.60 -18.99 2.89 -783.91 -2.26 -21.26 16 10 C 0.08 1.32 5.45 87.55 0.48 1.80 16 11 C -0.11 -2.20 6.38 32.54 0.21 -1.99 16 12 C -0.09 -2.55 3.85 -9.31 -0.04 -2.58 16 13 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 14 C 0.13 5.01 6.66 86.45 0.58 5.59 16 15 N -0.62 -32.32 3.37 -698.77 -2.36 -34.68 16 16 C -0.24 -13.72 10.25 84.03 0.86 -12.86 16 17 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 18 C -0.07 -4.22 5.48 84.86 0.47 -3.75 16 19 N -0.95 -61.14 10.17 21.65 0.22 -60.92 16 20 Si 0.98 47.24 29.55 68.60 2.03 49.27 16 21 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 22 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 23 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 24 C 0.18 9.60 4.89 86.75 0.42 10.02 16 25 C 0.12 4.62 3.83 46.02 0.18 4.80 16 26 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 27 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.08 2.53 7.01 -2.38 -0.02 2.51 16 30 H 0.28 1.77 5.06 -2.91 -0.01 1.75 16 31 H 0.12 1.05 8.12 -2.39 -0.02 1.03 16 32 H 0.10 1.24 5.26 -2.38 -0.01 1.23 16 33 H 0.05 1.42 7.89 -2.39 -0.02 1.40 16 34 H 0.14 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.04 1.35 7.73 -2.39 -0.02 1.33 16 37 H 0.24 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.04 2.42 6.23 -2.39 -0.01 2.40 16 39 H -0.02 -1.34 7.97 -2.39 -0.02 -1.36 16 Total: -1.00 -85.42 315.78 4.44 -80.98 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: 1.08 Total: 4.23 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 5.49 Total: 17.16 kcal Atomic # 7 Polarization: -122.52 SS G_CDS: -4.94 Total: -127.46 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: 0.79 Total: -24.18 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -85.42 4.44 -80.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076196664.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.140 kcal (2) G-P(sol) polarization free energy of solvation -85.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds