Wall clock time and date at job start Tue Mar 31 2020 02:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00102 * 2 1 4 4 H 1.48502 * 109.47121 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47211 * 300.00258 * 3 2 1 6 6 H 1.48499 * 109.46799 * 60.00296 * 3 2 1 7 7 C 1.38815 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00139 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99939 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.05601 * 328.09762 * 10 9 7 12 12 C 1.54733 * 111.52972 * 207.27580 * 10 9 7 13 13 C 1.54102 * 106.75980 * 242.33775 * 12 10 9 14 14 C 1.54448 * 104.73321 * 335.69310 * 13 12 10 15 15 H 1.09005 * 113.73711 * 272.41527 * 14 13 12 16 16 C 1.54895 * 109.71032 * 143.80126 * 14 13 12 17 17 N 1.47352 * 105.00923 * 288.54055 * 16 14 13 18 18 C 1.34774 * 125.70404 * 155.08827 * 17 16 14 19 19 O 1.21626 * 119.99759 * 4.26969 * 18 17 16 20 20 C 1.47233 * 120.00289 * 184.26886 * 18 17 16 21 21 C 1.37005 * 127.18812 * 174.22687 * 20 18 17 22 22 N 1.33316 * 106.37432 * 180.02562 * 21 20 18 23 23 N 1.28517 * 109.43964 * 359.97438 * 22 21 20 24 24 N 1.28716 * 110.63483 * 0.02562 * 23 22 21 25 25 H 0.97005 * 126.03532 * 179.97438 * 24 23 22 26 26 C 1.47034 * 108.59871 * 334.82391 * 17 16 14 27 27 C 1.53896 * 109.91614 * 89.29432 * 10 9 7 28 28 H 1.08998 * 112.92506 * 265.08512 * 27 10 9 29 29 H 0.96995 * 119.99873 * 359.97438 * 1 2 3 30 30 H 0.97004 * 120.00569 * 359.97438 * 9 7 2 31 31 H 1.09002 * 110.72342 * 122.58922 * 12 10 9 32 32 H 1.09001 * 109.25705 * 1.28384 * 12 10 9 33 33 H 1.08998 * 110.38618 * 216.87728 * 13 12 10 34 34 H 1.09002 * 110.48110 * 94.55354 * 13 12 10 35 35 H 1.09000 * 110.44863 * 169.62893 * 16 14 13 36 36 H 1.08991 * 110.28857 * 47.37635 * 16 14 13 37 37 H 1.07998 * 126.81386 * 0.05535 * 21 20 18 38 38 H 1.09002 * 109.83191 * 122.04212 * 26 17 16 39 39 H 1.09000 * 109.83308 * 242.92246 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 1 2.9982 -3.5457 -0.5419 12 6 1.2346 -4.7879 -0.6624 13 6 0.9905 -5.8529 0.4243 14 6 2.1405 -5.6529 1.4357 15 1 3.0430 -6.2128 1.1903 16 6 1.6221 -5.9063 2.8731 17 7 0.7563 -4.7529 3.1754 18 6 -0.2561 -4.7411 4.0649 19 8 -0.4703 -5.7192 4.7554 20 6 -1.1029 -3.5443 4.2008 21 6 -2.2284 -3.4093 4.9702 22 7 -2.6636 -2.1630 4.7840 23 7 -1.8815 -1.5546 3.9656 24 7 -0.9300 -2.3330 3.5840 25 1 -0.2166 -2.1027 2.9683 26 6 1.1856 -3.6150 2.3490 27 6 2.3345 -4.1026 1.4452 28 1 3.3171 -3.7957 1.8037 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3881 -0.0016 31 1 1.7812 -5.2256 -1.4977 32 1 0.2835 -4.3843 -1.0097 33 1 1.0341 -6.8528 -0.0074 34 1 0.0272 -5.6907 0.9079 35 1 2.4541 -5.9492 3.5760 36 1 1.0467 -6.8312 2.9098 37 1 -2.6743 -4.1628 5.6025 38 1 0.3538 -3.2691 1.7353 39 1 1.5350 -2.8045 2.9886 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026300892.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:09 Heat of formation + Delta-G solvation = 86.165172 kcal Electronic energy + Delta-G solvation = -24342.650100 eV Core-core repulsion = 20901.982949 eV Total energy + Delta-G solvation = -3440.667151 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.16130 -40.51702 -38.47251 -35.25651 -33.90926 -33.02697 -31.48326 -30.94067 -29.35184 -28.64782 -25.71118 -24.95658 -23.43761 -22.85799 -22.33359 -20.60622 -19.85205 -19.16827 -17.89946 -17.65260 -16.75426 -16.39714 -15.93521 -15.56462 -15.02267 -14.73033 -14.25291 -14.06492 -13.55217 -13.46283 -13.23050 -13.04948 -12.63606 -12.41062 -11.90653 -11.69269 -11.34838 -11.15106 -10.94309 -10.93107 -10.78421 -10.57626 -10.53554 -10.49496 -10.37727 -10.17012 -10.05169 -9.85974 -9.39878 -9.12679 -8.66283 -7.23756 -5.99960 -3.31862 1.06342 2.46760 2.62012 2.97370 3.11904 3.30447 3.36774 3.40077 4.20224 4.39338 4.49492 4.62146 4.76336 4.79762 5.08050 5.23938 5.27992 5.35026 5.38921 5.39167 5.45379 5.50554 5.67984 5.73118 5.79702 5.91676 5.94729 6.07662 6.09060 6.19728 6.24169 6.31280 6.43342 6.56785 6.69978 6.85688 7.35209 7.52631 7.94063 8.17380 8.48339 9.29131 9.81028 10.15414 11.21177 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.007387 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.420040 B = 3789.787242 C = 5512.885733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.006 4.006 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.253 4.253 8 H 0.074 0.926 9 N -0.720 5.720 10 C 0.178 3.822 11 H 0.059 0.941 12 C -0.132 4.132 13 C -0.114 4.114 14 C -0.105 4.105 15 H 0.104 0.896 16 C 0.116 3.884 17 N -0.612 5.612 18 C 0.611 3.389 19 O -0.529 6.529 20 C -0.073 4.073 21 C 0.025 3.975 22 N -0.283 5.283 23 N -0.035 5.035 24 N -0.360 5.360 25 H 0.461 0.539 26 C 0.099 3.901 27 C -0.112 4.112 28 H 0.089 0.911 29 H 0.259 0.741 30 H 0.382 0.618 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.200 0.800 38 H 0.089 0.911 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.358 -11.674 3.675 12.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.203 4.203 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.384 4.384 8 H 0.092 0.908 9 N -0.361 5.361 10 C 0.067 3.933 11 H 0.077 0.923 12 C -0.171 4.171 13 C -0.152 4.152 14 C -0.124 4.124 15 H 0.122 0.878 16 C -0.006 4.006 17 N -0.345 5.345 18 C 0.398 3.602 19 O -0.405 6.405 20 C -0.208 4.208 21 C -0.135 4.135 22 N -0.147 5.147 23 N -0.017 5.017 24 N -0.093 5.093 25 H 0.315 0.685 26 C -0.024 4.024 27 C -0.134 4.134 28 H 0.107 0.893 29 H 0.070 0.930 30 H 0.217 0.783 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.217 0.783 38 H 0.107 0.893 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.587 -10.635 4.019 11.660 hybrid contribution 1.097 0.237 -0.385 1.187 sum 3.684 -10.398 3.633 11.614 Atomic orbital electron populations 1.69621 1.04983 1.26247 1.56493 1.24762 0.95525 0.97764 1.02254 0.86180 0.78811 0.84099 0.77433 1.20542 1.21702 1.21677 1.19278 0.91170 0.83748 1.44169 0.90849 1.42613 1.05519 0.99864 1.88080 1.20856 0.95365 0.86243 0.90827 0.92281 1.22600 1.01169 0.95747 0.97550 1.22216 0.97871 0.98856 0.96269 1.23258 0.98916 0.96956 0.93288 0.87757 1.22223 0.93431 0.88977 0.96013 1.48500 1.31503 1.14828 1.39712 1.16353 0.78922 0.85276 0.79699 1.90824 1.70793 1.34284 1.44553 1.22267 1.03406 0.89542 1.05539 1.23814 0.93577 0.95790 1.00367 1.74996 1.21712 1.05549 1.12435 1.78313 0.95709 1.18224 1.09455 1.46468 1.22524 1.08118 1.32237 0.68452 1.22331 0.99672 0.87545 0.92840 1.23532 0.97138 0.93392 0.99327 0.89290 0.93048 0.78347 0.91717 0.91453 0.91904 0.91815 0.91280 0.90266 0.78299 0.89337 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -24.91 13.06 55.49 0.72 -24.18 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 3 Si 0.90 20.62 29.55 -169.99 -5.02 15.59 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.25 -5.99 9.95 -15.06 -0.15 -6.14 16 8 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 9 N -0.72 -14.76 3.68 -52.09 -0.19 -14.95 16 10 C 0.18 2.84 3.26 -66.55 -0.22 2.62 16 11 H 0.06 0.97 8.07 -51.93 -0.42 0.55 16 12 C -0.13 -1.81 6.63 -25.24 -0.17 -1.97 16 13 C -0.11 -1.35 5.90 -25.40 -0.15 -1.50 16 14 C -0.10 -1.15 4.22 -87.12 -0.37 -1.52 16 15 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 16 C 0.12 1.36 6.18 -2.58 -0.02 1.35 16 17 N -0.61 -8.60 2.88 -172.06 -0.50 -9.10 16 18 C 0.61 9.60 7.83 -12.61 -0.10 9.50 16 19 O -0.53 -9.19 17.21 5.25 0.09 -9.10 16 20 C -0.07 -1.16 6.97 -82.33 -0.57 -1.73 16 21 C 0.03 0.38 11.87 -17.35 -0.21 0.18 16 22 N -0.28 -4.96 12.35 30.47 0.38 -4.59 16 23 N -0.03 -0.65 13.35 60.35 0.81 0.16 16 24 N -0.36 -6.12 6.58 33.31 0.22 -5.90 16 25 H 0.46 7.90 5.20 -190.32 -0.99 6.91 16 26 C 0.10 1.46 3.71 -3.18 -0.01 1.45 16 27 C -0.11 -1.52 3.93 -87.84 -0.35 -1.86 16 28 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.38 8.51 6.83 -40.82 -0.28 8.23 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.04 7.74 -51.93 -0.40 0.63 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.85 7.39 -51.93 -0.38 0.47 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 37 H 0.20 2.41 8.06 -52.49 -0.42 1.98 16 38 H 0.09 1.49 4.91 -51.93 -0.25 1.23 16 39 H 0.06 1.00 7.41 -51.93 -0.38 0.62 16 LS Contribution 316.45 15.07 4.77 4.77 Total: -1.00 -27.77 316.45 -6.74 -34.51 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -5.61 Total: 12.68 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -2.40 Total: 0.12 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 1.44 Total: -58.56 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.77 -6.74 -34.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026300892.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.672 kcal (2) G-P(sol) polarization free energy of solvation -27.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds