Wall clock time and date at job start Tue Mar 31 2020 02:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86808 * 119.99864 * 2 1 4 4 H 1.48494 * 109.46830 * 85.25698 * 3 2 1 5 5 H 1.48493 * 109.47068 * 325.25420 * 3 2 1 6 6 H 1.48500 * 109.47015 * 205.25397 * 3 2 1 7 7 C 1.38809 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99563 * 197.29771 * 7 2 1 9 9 N 1.36932 * 120.00294 * 17.29185 * 7 2 1 10 10 C 1.44528 * 117.26402 * 25.22762 * 9 7 2 11 11 C 1.51605 * 113.00178 * 150.69150 * 10 9 7 12 12 C 1.49843 * 114.45474 * 35.49490 * 11 10 9 13 13 H 1.08998 * 108.54884 * 188.02013 * 12 11 10 14 14 C 1.53844 * 114.34669 * 66.01076 * 12 11 10 15 15 N 1.48097 * 103.41525 * 195.56948 * 14 12 11 16 16 C 1.34779 * 125.74566 * 204.45165 * 15 14 12 17 17 O 1.21553 * 120.00106 * 359.97438 * 16 15 14 18 18 C 1.47873 * 120.00291 * 179.97438 * 16 15 14 19 19 N 1.34541 * 126.04960 * 179.97438 * 18 16 15 20 20 C 1.30870 * 107.26950 * 179.97438 * 19 18 16 21 21 N 1.34588 * 107.62400 * 0.02562 * 20 19 18 22 22 H 0.97001 * 125.74972 * 179.97438 * 21 20 19 23 23 N 1.28849 * 108.50371 * 359.73419 * 21 20 19 24 24 C 1.47464 * 108.51191 * 24.42215 * 15 14 12 25 25 C 1.54411 * 113.81922 * 309.66863 * 12 11 10 26 26 H 1.09000 * 113.64885 * 286.18251 * 25 12 11 27 27 C 1.44412 * 117.26999 * 205.49362 * 9 7 2 28 28 H 0.97002 * 120.00437 * 0.02562 * 1 2 3 29 29 H 1.09001 * 108.74656 * 271.81018 * 10 9 7 30 30 H 1.08997 * 108.74972 * 29.91658 * 10 9 7 31 31 H 1.08998 * 108.66243 * 274.09831 * 11 10 9 32 32 H 1.08997 * 108.22859 * 156.57913 * 11 10 9 33 33 H 1.08995 * 110.63267 * 77.08827 * 14 12 11 34 34 H 1.08994 * 110.77320 * 314.11225 * 14 12 11 35 35 H 1.08003 * 126.18878 * 180.02562 * 20 19 18 36 36 H 1.08996 * 110.04639 * 242.80850 * 24 15 14 37 37 H 1.09002 * 110.03313 * 121.35284 * 24 15 14 38 38 H 1.08999 * 108.73702 * 335.60846 * 27 9 7 39 39 H 1.08998 * 108.74501 * 93.81760 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3973 2.1043 1.3952 5 1 1.5014 2.6216 -0.7979 6 1 3.5943 1.4134 -0.5973 7 6 2.0102 -1.2021 -0.0005 8 1 3.0536 -1.2233 0.2776 9 7 1.3720 -2.3611 -0.3535 10 6 0.2206 -2.2456 -1.2195 11 6 0.0158 -3.4638 -2.0984 12 6 0.3753 -4.7651 -1.4484 13 1 0.3299 -5.5526 -2.2006 14 6 -0.5243 -5.1512 -0.2617 15 7 0.2455 -6.2165 0.4208 16 6 -0.2718 -7.1811 1.2073 17 8 -1.4700 -7.2250 1.4069 18 6 0.6184 -8.1859 1.8276 19 7 0.2348 -9.1957 2.6296 20 6 1.3137 -9.8552 2.9668 21 7 2.3614 -9.2530 2.3743 22 1 3.2888 -9.5274 2.4480 23 7 1.9243 -8.2536 1.6885 24 6 1.6733 -6.0447 0.0944 25 6 1.7749 -4.7708 -0.7962 26 1 2.5925 -4.8145 -1.5158 27 6 1.9022 -3.5959 0.1753 28 1 -0.4851 0.8400 -0.0004 29 1 -0.6672 -2.0995 -0.6042 30 1 0.3489 -1.3717 -1.8582 31 1 0.6189 -3.3494 -2.9991 32 1 -1.0339 -3.5015 -2.3896 33 1 -1.4816 -5.5350 -0.6143 34 1 -0.6743 -4.3003 0.4026 35 1 1.3558 -10.7254 3.6052 36 1 2.0385 -6.9134 -0.4533 37 1 2.2515 -5.9086 1.0083 38 1 2.9559 -3.4509 0.4135 39 1 1.3672 -3.8424 1.0924 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088144192.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:51 Heat of formation + Delta-G solvation = 94.644418 kcal Electronic energy + Delta-G solvation = -23762.872761 eV Core-core repulsion = 20322.573298 eV Total energy + Delta-G solvation = -3440.299463 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.63861 -40.14197 -38.15868 -35.48094 -33.58466 -32.93694 -31.59112 -31.37283 -30.10841 -27.64140 -25.56366 -24.91537 -23.45909 -22.87415 -21.71932 -21.47604 -19.77521 -18.63865 -18.04646 -17.05715 -16.61326 -16.46996 -15.67092 -15.37924 -15.01671 -14.79068 -14.21912 -13.75770 -13.57022 -13.21169 -12.96810 -12.80085 -12.46992 -12.28053 -12.18896 -11.62082 -11.18693 -10.91187 -10.89208 -10.76033 -10.58291 -10.56148 -10.21202 -10.20738 -9.94077 -9.90990 -9.89959 -9.66988 -9.37729 -8.45023 -8.37717 -6.63694 -5.69730 -3.18317 1.22558 1.98894 2.38469 2.88197 3.39026 3.40572 3.46475 3.48450 4.04209 4.28137 4.50728 4.58196 4.85346 4.99265 5.20449 5.43803 5.51933 5.63689 5.69064 5.79326 5.87586 5.91579 6.02306 6.07167 6.12571 6.27456 6.30005 6.40017 6.47252 6.55525 6.60774 6.74291 6.86897 6.95303 7.45711 7.56425 7.77624 7.82967 7.87933 8.24443 8.51122 9.31903 10.00070 10.34079 11.32155 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026647 B = 0.004020 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.523469 B = 6963.379601 C = 7318.072489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.005 3.995 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.267 4.267 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.187 3.813 11 C -0.125 4.125 12 C -0.082 4.082 13 H 0.063 0.937 14 C 0.118 3.882 15 N -0.599 5.599 16 C 0.622 3.378 17 O -0.517 6.517 18 C 0.161 3.839 19 N -0.464 5.464 20 C 0.193 3.807 21 N -0.402 5.402 22 H 0.451 0.549 23 N -0.269 5.269 24 C 0.113 3.887 25 C -0.109 4.109 26 H 0.097 0.903 27 C 0.167 3.833 28 H 0.252 0.748 29 H 0.038 0.962 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.229 0.771 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.043 0.957 39 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.522 -18.825 0.844 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.193 4.193 3 Si 0.730 3.270 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.397 4.397 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.061 3.939 11 C -0.164 4.164 12 C -0.101 4.101 13 H 0.082 0.918 14 C -0.003 4.003 15 N -0.333 5.333 16 C 0.405 3.595 17 O -0.390 6.390 18 C -0.120 4.120 19 N -0.188 5.188 20 C -0.105 4.105 21 N -0.125 5.125 22 H 0.297 0.703 23 N -0.111 5.111 24 C -0.010 4.010 25 C -0.129 4.129 26 H 0.115 0.885 27 C 0.040 3.960 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.246 0.754 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.061 0.939 39 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 5.515 -18.364 0.684 19.186 hybrid contribution 1.240 0.376 0.348 1.341 sum 6.754 -17.988 1.032 19.242 Atomic orbital electron populations 1.70108 1.05164 1.25298 1.53993 1.24995 0.95237 0.98270 1.00838 0.86325 0.79207 0.83952 0.77558 1.21553 1.21582 1.20510 1.19281 0.92983 0.85308 1.42092 0.91671 1.42802 1.33181 1.01460 1.53852 1.19902 0.90358 0.92388 0.91219 1.21009 1.00486 0.95185 0.99726 1.21165 0.94706 0.98440 0.95833 0.91843 1.22339 0.94765 0.89319 0.93839 1.48446 1.09825 1.27999 1.47021 1.15851 0.85610 0.79285 0.78717 1.90827 1.13883 1.73516 1.60790 1.23841 0.88136 0.98655 1.01326 1.71306 1.27932 1.05957 1.13594 1.26724 0.82140 1.01154 1.00529 1.45203 1.12264 1.20746 1.34296 0.70296 1.74465 1.13333 1.07436 1.15820 1.22563 0.80765 0.98030 0.99658 1.22856 0.97481 0.94841 0.97747 0.88532 1.20321 0.97321 0.85525 0.92818 0.93729 0.94369 0.92794 0.92732 0.92460 0.90505 0.89517 0.75440 0.91541 0.90614 0.93854 0.97325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.00 10.80 55.49 0.60 -25.40 16 2 C 0.01 0.15 4.81 -17.43 -0.08 0.07 16 3 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.27 -7.24 9.31 -15.06 -0.14 -7.38 16 8 H 0.07 1.73 7.70 -52.48 -0.40 1.33 16 9 N -0.59 -14.41 3.17 -177.28 -0.56 -14.98 16 10 C 0.19 4.36 4.38 -5.80 -0.03 4.34 16 11 C -0.13 -2.25 5.46 -29.00 -0.16 -2.41 16 12 C -0.08 -1.34 2.69 -91.01 -0.25 -1.58 16 13 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 14 C 0.12 2.08 5.83 -2.72 -0.02 2.06 16 15 N -0.60 -10.08 3.33 -170.46 -0.57 -10.65 16 16 C 0.62 11.27 7.87 -12.32 -0.10 11.17 16 17 O -0.52 -11.00 17.37 5.32 0.09 -10.91 16 18 C 0.16 2.47 7.82 -156.36 -1.22 1.24 16 19 N -0.46 -6.48 11.41 -12.36 -0.14 -6.62 16 20 C 0.19 1.49 13.14 -90.48 -1.19 0.31 16 21 N -0.40 -2.90 6.93 29.57 0.20 -2.69 16 22 H 0.45 1.10 8.96 -190.21 -1.71 -0.60 16 23 N -0.27 -3.23 9.81 32.07 0.31 -2.92 16 24 C 0.11 1.65 4.66 -2.04 -0.01 1.64 16 25 C -0.11 -1.76 3.98 -88.41 -0.35 -2.11 16 26 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 27 C 0.17 3.40 4.95 -5.16 -0.03 3.38 16 28 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.04 1.01 7.26 -51.93 -0.38 0.63 16 30 H 0.05 1.40 6.95 -51.93 -0.36 1.03 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 34 H 0.09 1.77 7.09 -51.93 -0.37 1.40 16 35 H 0.23 0.47 8.06 -52.48 -0.42 0.05 16 36 H 0.07 0.86 7.82 -51.93 -0.41 0.46 16 37 H 0.08 1.11 7.22 -51.93 -0.37 0.74 16 38 H 0.04 0.87 7.72 -51.93 -0.40 0.47 16 39 H 0.01 0.20 6.90 -51.93 -0.36 -0.16 16 LS Contribution 313.28 15.07 4.72 4.72 Total: -1.00 -35.63 313.28 -10.36 -45.99 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -6.42 Total: -3.84 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: -3.56 Total: 10.72 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: -0.15 Total: -63.25 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.63 -10.36 -45.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088144192.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.634 kcal (2) G-P(sol) polarization free energy of solvation -35.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds