Wall clock time and date at job start Tue Mar 31 2020 02:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86808 * 119.99864 * 2 1 4 4 H 1.48494 * 109.46830 * 85.25698 * 3 2 1 5 5 H 1.48493 * 109.47068 * 325.25420 * 3 2 1 6 6 H 1.48500 * 109.47015 * 205.25397 * 3 2 1 7 7 C 1.38809 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99563 * 197.29771 * 7 2 1 9 9 N 1.36932 * 120.00294 * 17.29185 * 7 2 1 10 10 C 1.44528 * 117.26402 * 25.22762 * 9 7 2 11 11 C 1.51605 * 113.00178 * 150.69150 * 10 9 7 12 12 C 1.49843 * 114.45474 * 35.49490 * 11 10 9 13 13 H 1.08998 * 108.54884 * 188.02013 * 12 11 10 14 14 C 1.53844 * 114.34669 * 66.01076 * 12 11 10 15 15 N 1.48097 * 103.41525 * 195.56948 * 14 12 11 16 16 C 1.34779 * 125.74566 * 204.45165 * 15 14 12 17 17 O 1.21553 * 120.00106 * 359.97438 * 16 15 14 18 18 C 1.47873 * 120.00291 * 179.97438 * 16 15 14 19 19 N 1.34541 * 126.04960 * 179.97438 * 18 16 15 20 20 C 1.30870 * 107.26950 * 179.97438 * 19 18 16 21 21 N 1.34588 * 107.62400 * 0.02562 * 20 19 18 22 22 H 0.97001 * 125.74972 * 179.97438 * 21 20 19 23 23 N 1.28849 * 108.50371 * 359.73419 * 21 20 19 24 24 C 1.47464 * 108.51191 * 24.42215 * 15 14 12 25 25 C 1.54411 * 113.81922 * 309.66863 * 12 11 10 26 26 H 1.09000 * 113.64885 * 286.18251 * 25 12 11 27 27 C 1.44412 * 117.26999 * 205.49362 * 9 7 2 28 28 H 0.97002 * 120.00437 * 0.02562 * 1 2 3 29 29 H 1.09001 * 108.74656 * 271.81018 * 10 9 7 30 30 H 1.08997 * 108.74972 * 29.91658 * 10 9 7 31 31 H 1.08998 * 108.66243 * 274.09831 * 11 10 9 32 32 H 1.08997 * 108.22859 * 156.57913 * 11 10 9 33 33 H 1.08995 * 110.63267 * 77.08827 * 14 12 11 34 34 H 1.08994 * 110.77320 * 314.11225 * 14 12 11 35 35 H 1.08003 * 126.18878 * 180.02562 * 20 19 18 36 36 H 1.08996 * 110.04639 * 242.80850 * 24 15 14 37 37 H 1.09002 * 110.03313 * 121.35284 * 24 15 14 38 38 H 1.08999 * 108.73702 * 335.60846 * 27 9 7 39 39 H 1.08998 * 108.74501 * 93.81760 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3973 2.1043 1.3952 5 1 1.5014 2.6216 -0.7979 6 1 3.5943 1.4134 -0.5973 7 6 2.0102 -1.2021 -0.0005 8 1 3.0536 -1.2233 0.2776 9 7 1.3720 -2.3611 -0.3535 10 6 0.2206 -2.2456 -1.2195 11 6 0.0158 -3.4638 -2.0984 12 6 0.3753 -4.7651 -1.4484 13 1 0.3299 -5.5526 -2.2006 14 6 -0.5243 -5.1512 -0.2617 15 7 0.2455 -6.2165 0.4208 16 6 -0.2718 -7.1811 1.2073 17 8 -1.4700 -7.2250 1.4069 18 6 0.6184 -8.1859 1.8276 19 7 0.2348 -9.1957 2.6296 20 6 1.3137 -9.8552 2.9668 21 7 2.3614 -9.2530 2.3743 22 1 3.2888 -9.5274 2.4480 23 7 1.9243 -8.2536 1.6885 24 6 1.6733 -6.0447 0.0944 25 6 1.7749 -4.7708 -0.7962 26 1 2.5925 -4.8145 -1.5158 27 6 1.9022 -3.5959 0.1753 28 1 -0.4851 0.8400 -0.0004 29 1 -0.6672 -2.0995 -0.6042 30 1 0.3489 -1.3717 -1.8582 31 1 0.6189 -3.3494 -2.9991 32 1 -1.0339 -3.5015 -2.3896 33 1 -1.4816 -5.5350 -0.6143 34 1 -0.6743 -4.3003 0.4026 35 1 1.3558 -10.7254 3.6052 36 1 2.0385 -6.9134 -0.4533 37 1 2.2515 -5.9086 1.0083 38 1 2.9559 -3.4509 0.4135 39 1 1.3672 -3.8424 1.0924 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088144192.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:51 Heat of formation + Delta-G solvation = 69.319138 kcal Electronic energy + Delta-G solvation = -23763.970948 eV Core-core repulsion = 20322.573298 eV Total energy + Delta-G solvation = -3441.397650 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.45960 -41.53272 -39.63272 -37.19237 -34.53496 -34.43695 -33.07611 -32.65552 -31.71188 -29.08917 -27.14779 -26.53752 -24.65931 -23.80426 -23.33280 -22.95471 -20.82015 -19.84200 -19.29945 -18.52398 -18.13010 -17.59243 -17.01641 -16.80346 -16.64361 -15.84409 -15.68058 -15.41041 -15.23307 -14.76931 -14.62540 -14.28390 -13.83027 -13.59963 -13.39799 -13.22629 -12.87566 -12.70574 -12.38652 -12.23015 -12.00204 -11.93175 -11.77708 -11.57203 -11.55675 -11.38697 -11.30325 -10.97763 -10.74614 -10.48480 -9.77890 -8.67510 -7.78406 -5.31187 0.25020 1.16175 1.46789 1.48360 1.49102 1.58508 1.99784 2.21084 2.52934 3.03224 3.29898 3.42489 3.50802 3.62467 3.83757 3.89851 4.02571 4.24889 4.37855 4.48280 4.54968 4.63391 4.70558 4.78604 4.84770 4.87856 4.99802 5.08057 5.10656 5.24316 5.28768 5.34969 5.37304 5.54826 5.71469 5.92296 5.98152 6.29859 6.41743 6.79038 7.08788 7.23679 8.05754 8.29708 9.20256 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026647 B = 0.004020 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.523469 B = 6963.379601 C = 7318.072489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.049 4.049 3 Si 0.965 3.035 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.278 4.278 8 H 0.069 0.931 9 N -0.603 5.603 10 C 0.199 3.801 11 C -0.115 4.115 12 C -0.076 4.076 13 H 0.100 0.900 14 C 0.120 3.880 15 N -0.599 5.599 16 C 0.615 3.385 17 O -0.565 6.565 18 C 0.127 3.873 19 N -0.517 5.517 20 C 0.221 3.779 21 N -0.378 5.378 22 H 0.474 0.526 23 N -0.266 5.266 24 C 0.123 3.877 25 C -0.097 4.097 26 H 0.127 0.873 27 C 0.165 3.835 28 H 0.247 0.753 29 H -0.005 1.005 30 H 0.021 0.979 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.286 0.714 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.048 0.952 39 H -0.016 1.016 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.385 -21.455 0.287 23.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.793 3.207 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.191 1.191 7 C -0.408 4.408 8 H 0.087 0.913 9 N -0.326 5.326 10 C 0.074 3.926 11 C -0.154 4.154 12 C -0.095 4.095 13 H 0.119 0.881 14 C -0.002 4.002 15 N -0.332 5.332 16 C 0.401 3.599 17 O -0.442 6.442 18 C -0.152 4.152 19 N -0.242 5.242 20 C -0.076 4.076 21 N -0.104 5.104 22 H 0.326 0.674 23 N -0.110 5.110 24 C 0.001 3.999 25 C -0.117 4.117 26 H 0.145 0.855 27 C 0.039 3.961 28 H 0.056 0.944 29 H 0.013 0.987 30 H 0.039 0.961 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.301 0.699 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.002 0.998 Dipole moment (debyes) X Y Z Total from point charges 8.462 -21.030 0.125 22.669 hybrid contribution 0.428 1.110 0.654 1.357 sum 8.890 -19.920 0.779 21.828 Atomic orbital electron populations 1.70304 1.06662 1.25520 1.55561 1.25779 0.95972 1.01483 1.01235 0.85303 0.78384 0.79809 0.77212 1.21636 1.21949 1.19081 1.19683 0.93364 0.86555 1.41216 0.91283 1.43077 1.33114 1.02249 1.54146 1.19589 0.88406 0.94019 0.90599 1.20843 1.01927 0.93554 0.99088 1.21146 0.94204 0.98293 0.95853 0.88136 1.22166 0.95776 0.88440 0.93806 1.48514 1.10656 1.27356 1.46680 1.16328 0.85617 0.79726 0.78245 1.90777 1.16030 1.74957 1.62438 1.23224 0.88833 0.99515 1.03606 1.71224 1.31156 1.06903 1.14956 1.27680 0.80344 1.00797 0.98769 1.45221 1.13580 1.19076 1.32551 0.67433 1.74317 1.11773 1.08698 1.16207 1.22583 0.79415 0.98216 0.99668 1.22815 0.98313 0.93142 0.97413 0.85471 1.20439 0.96699 0.85712 0.93204 0.94363 0.98694 0.96070 0.90721 0.91138 0.90372 0.93633 0.69853 0.88548 0.90686 0.93402 0.99822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.37 10.80 21.65 0.23 -56.13 16 2 C -0.05 -2.78 4.81 84.86 0.41 -2.37 16 3 Si 0.96 45.23 29.59 68.60 2.03 47.26 16 4 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.28 -15.32 9.31 84.03 0.78 -14.54 16 8 H 0.07 3.68 7.70 -2.91 -0.02 3.65 16 9 N -0.60 -30.09 3.17 -714.79 -2.27 -32.36 16 10 C 0.20 9.67 4.38 86.29 0.38 10.05 16 11 C -0.12 -4.06 5.46 29.12 0.16 -3.90 16 12 C -0.08 -2.33 2.69 -11.04 -0.03 -2.36 16 13 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 14 C 0.12 4.29 5.83 86.36 0.50 4.79 16 15 N -0.60 -20.04 3.33 -811.50 -2.70 -22.75 16 16 C 0.62 22.67 7.87 86.79 0.68 23.35 16 17 O -0.57 -25.19 17.37 -3.88 -0.07 -25.25 16 18 C 0.13 3.78 7.82 137.13 1.07 4.85 16 19 N -0.52 -13.68 11.41 -193.03 -2.20 -15.88 16 20 C 0.22 2.58 13.14 180.30 2.37 4.95 16 21 N -0.38 -3.95 6.93 -60.37 -0.42 -4.37 16 22 H 0.47 0.06 8.96 -219.80 -1.97 -1.91 16 23 N -0.27 -5.69 9.81 -52.44 -0.51 -6.20 16 24 C 0.12 3.32 4.66 87.15 0.41 3.73 16 25 C -0.10 -2.90 3.98 -9.36 -0.04 -2.94 16 26 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 27 C 0.17 6.73 4.95 86.76 0.43 7.16 16 28 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.00 -0.27 7.26 -2.39 -0.02 -0.29 16 30 H 0.02 1.13 6.95 -2.39 -0.02 1.12 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.08 2.73 8.06 -2.39 -0.02 2.71 16 34 H 0.05 1.99 7.09 -2.39 -0.02 1.97 16 35 H 0.29 -0.46 8.06 -2.91 -0.02 -0.48 16 36 H 0.10 2.10 7.82 -2.39 -0.02 2.09 16 37 H 0.07 2.07 7.22 -2.39 -0.02 2.05 16 38 H 0.05 1.88 7.72 -2.39 -0.02 1.86 16 39 H -0.02 -0.72 6.90 -2.39 -0.02 -0.74 16 Total: -1.00 -84.22 313.28 0.33 -83.89 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -0.88 Total: -0.96 kcal Atomic # 6 Polarization: 25.64 SS G_CDS: 7.12 Total: 32.76 kcal Atomic # 7 Polarization: -129.82 SS G_CDS: -7.87 Total: -137.69 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.07 Total: -25.25 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -84.22 0.33 -83.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088144192.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.209 kcal (2) G-P(sol) polarization free energy of solvation -84.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds