Wall clock time and date at job start Tue Mar 31 2020 02:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48500 * 109.46922 * 269.99928 * 3 2 1 5 5 H 1.48500 * 109.47411 * 29.99750 * 3 2 1 6 6 H 1.48494 * 109.47378 * 149.99945 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.35042 * 125.92584 * 124.71997 * 10 9 7 12 12 C 1.35086 * 107.97359 * 179.83836 * 11 10 9 13 13 C 1.50705 * 126.07160 * 180.16219 * 12 11 10 14 14 O 1.42894 * 109.47346 * 0.30364 * 13 12 11 15 15 C 1.40849 * 107.85131 * 0.41953 * 12 11 10 16 16 C 1.48419 * 126.03723 * 179.77403 * 15 12 11 17 17 C 1.39322 * 120.10555 * 324.70935 * 16 15 12 18 18 C 1.38006 * 119.89158 * 179.79071 * 17 16 15 19 19 C 1.38439 * 120.10283 * 0.48766 * 18 17 16 20 20 Cl 1.73598 * 119.89203 * 179.76883 * 19 18 17 21 21 C 1.38433 * 120.21507 * 359.74089 * 19 18 17 22 22 C 1.37998 * 120.10583 * 0.02562 * 21 19 18 23 23 N 1.31616 * 107.92123 * 359.74079 * 15 12 11 24 24 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 26 26 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 27 27 H 1.07999 * 126.01118 * 359.97438 * 11 10 9 28 28 H 1.08999 * 109.47044 * 120.30754 * 13 12 11 29 29 H 1.08998 * 109.47117 * 240.30264 * 13 12 11 30 30 H 0.96700 * 114.00782 * 179.97438 * 14 13 12 31 31 H 1.08007 * 120.05674 * 0.02562 * 17 16 15 32 32 H 1.07997 * 119.94796 * 180.22974 * 18 17 16 33 33 H 1.07996 * 119.94669 * 180.02562 * 21 19 18 34 34 H 1.08001 * 120.05263 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4405 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 2.2449 -4.6195 0.8994 12 6 3.2581 -5.4440 0.5551 13 6 3.6645 -6.7012 1.2800 14 8 2.8031 -6.9037 2.4020 15 6 3.8709 -4.9168 -0.5983 16 6 5.0312 -5.5017 -1.3155 17 6 6.0415 -6.1443 -0.6031 18 6 7.1163 -6.6904 -1.2748 19 6 7.1965 -6.5916 -2.6533 20 17 8.5539 -7.2752 -3.4922 21 6 6.1975 -5.9499 -3.3651 22 6 5.1165 -5.4049 -2.7028 23 7 3.2323 -3.8142 -0.9282 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6243 -2.5567 0.8903 27 1 1.5831 -4.7449 1.7435 28 1 3.5862 -7.5522 0.6035 29 1 4.6940 -6.6050 1.6251 30 1 3.0066 -7.6970 2.9162 31 1 5.9818 -6.2183 0.4728 32 1 7.8980 -7.1919 -0.7238 33 1 6.2643 -5.8756 -4.4404 34 1 4.3374 -4.9048 -3.2590 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002860283.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:27 Heat of formation + Delta-G solvation = 37.192183 kcal Electronic energy + Delta-G solvation = -19847.978752 eV Core-core repulsion = 16580.052630 eV Total energy + Delta-G solvation = -3267.926122 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.70834 -38.99685 -36.64026 -36.52446 -33.88074 -32.36756 -31.28119 -30.40755 -29.85220 -27.39713 -25.06508 -23.79482 -22.78329 -21.87014 -19.95447 -19.43518 -17.20576 -17.05444 -16.57406 -16.00352 -15.37141 -15.22180 -14.80392 -14.45194 -14.04523 -13.73490 -13.54476 -13.50920 -13.40245 -12.70910 -12.28900 -12.00436 -11.83840 -11.62928 -11.46573 -11.23630 -10.97827 -10.88871 -10.82496 -10.30435 -10.17792 -10.02888 -9.77544 -9.09826 -9.09410 -8.66434 -8.21494 -7.62019 -6.28818 -4.34364 0.94540 1.27236 2.03808 2.66584 3.07619 3.22044 3.27870 3.31036 3.40625 3.82364 4.27973 4.38454 4.72702 4.79263 4.83175 5.06867 5.23503 5.27215 5.41824 5.46778 5.60038 5.68874 5.77039 5.91323 6.11256 6.16332 6.19652 6.47464 6.54634 6.73954 6.86242 6.95655 7.17422 7.64131 7.73552 7.80551 7.90340 8.43631 8.73623 9.31793 10.80175 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.015407 B = 0.003951 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.907592 B = 7085.518472 C = 8455.038688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.531 4.531 8 H 0.069 0.931 9 C 0.255 3.745 10 N -0.321 5.321 11 C 0.078 3.922 12 C -0.259 4.259 13 C 0.165 3.835 14 O -0.570 6.570 15 C 0.073 3.927 16 C 0.019 3.981 17 C -0.098 4.098 18 C -0.110 4.110 19 C -0.039 4.039 20 Cl -0.080 7.080 21 C -0.109 4.109 22 C -0.084 4.084 23 N -0.258 5.258 24 H 0.268 0.732 25 H 0.047 0.953 26 H 0.058 0.942 27 H 0.172 0.828 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.376 0.624 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.211 -15.928 -0.911 19.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.569 4.569 8 H 0.087 0.913 9 C 0.138 3.862 10 N -0.101 5.101 11 C -0.071 4.071 12 C -0.271 4.271 13 C 0.087 3.913 14 O -0.375 6.375 15 C -0.089 4.089 16 C 0.017 3.983 17 C -0.117 4.117 18 C -0.129 4.129 19 C -0.066 4.066 20 Cl -0.052 7.052 21 C -0.128 4.128 22 C -0.103 4.103 23 N -0.083 5.083 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.189 0.811 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.222 0.778 31 H 0.154 0.846 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.654 -14.154 -2.030 17.831 hybrid contribution 0.698 -0.199 0.720 1.023 sum 11.352 -14.352 -1.309 18.346 Atomic orbital electron populations 1.69913 1.06060 1.27742 1.49510 1.24937 0.94987 0.99584 0.94443 0.86314 0.79668 0.82017 0.78455 1.20251 1.20916 1.19668 1.21230 0.93983 0.89283 1.52454 0.91264 1.19816 0.85674 0.81246 0.99479 1.49461 1.23142 1.19530 1.17922 1.22204 0.99606 0.89238 0.96085 1.19553 1.03938 1.02117 1.01472 1.20205 0.91474 0.93643 0.86020 1.86476 1.58894 1.49129 1.43010 1.20231 0.97377 0.95253 0.96071 1.17963 0.91840 0.96148 0.92395 1.21207 0.92638 0.97463 1.00399 1.20900 0.98977 1.00936 0.92056 1.20949 0.91015 1.01909 0.92765 1.98355 1.44572 1.83828 1.78398 1.20977 0.93125 0.98228 1.00429 1.21276 0.97724 0.97812 0.93508 1.77606 1.00709 1.15681 1.14255 0.92241 0.93487 0.92466 0.81098 0.93574 0.93604 0.77772 0.84637 0.84872 0.84845 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.70 9.23 -34.44 -0.32 -15.02 16 8 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 9 C 0.26 6.43 6.26 -5.19 -0.03 6.40 16 10 N -0.32 -7.32 3.67 -62.58 -0.23 -7.55 16 11 C 0.08 1.53 10.75 -17.26 -0.19 1.34 16 12 C -0.26 -4.57 6.05 -104.75 -0.63 -5.20 16 13 C 0.16 2.15 6.51 36.01 0.23 2.39 16 14 O -0.57 -7.11 12.94 -35.23 -0.46 -7.56 16 15 C 0.07 1.38 6.74 -82.78 -0.56 0.82 16 16 C 0.02 0.29 5.80 -104.90 -0.61 -0.32 16 17 C -0.10 -1.22 9.03 -39.26 -0.35 -1.57 16 18 C -0.11 -1.21 9.81 -39.59 -0.39 -1.60 16 19 C -0.04 -0.45 6.32 -39.44 -0.25 -0.70 16 20 Cl -0.08 -0.83 28.95 -51.86 -1.50 -2.33 16 21 C -0.11 -1.31 9.81 -39.60 -0.39 -1.70 16 22 C -0.08 -1.19 9.75 -39.26 -0.38 -1.57 16 23 N -0.26 -5.80 12.40 33.43 0.41 -5.39 16 24 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 25 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 27 H 0.17 3.02 7.84 -52.49 -0.41 2.61 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.51 6.18 -51.93 -0.32 0.19 16 30 H 0.38 2.60 9.12 45.56 0.42 3.01 16 31 H 0.14 1.49 5.66 -52.48 -0.30 1.19 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 317.09 15.07 4.78 4.78 Total: -1.00 -30.93 317.09 -7.93 -38.86 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -2.69 Total: 2.42 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -3.96 Total: -15.10 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.92 Total: -37.38 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.46 Total: -7.56 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.93 -7.93 -38.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002860283.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.056 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds