Wall clock time and date at job start Tue Mar 31 2020 02:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31380 * 1 3 3 Si 1.86805 * 119.99925 * 2 1 4 4 H 1.48492 * 109.47154 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46862 * 59.99838 * 3 2 1 6 6 H 1.48505 * 109.47167 * 300.00256 * 3 2 1 7 7 C 1.38893 * 120.00279 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00286 * 154.59655 * 7 2 1 9 9 N 1.37518 * 119.99708 * 334.59292 * 7 2 1 10 10 C 1.33906 * 124.19559 * 147.38367 * 9 7 2 11 11 O 1.21517 * 123.80414 * 0.02562 * 10 9 7 12 12 N 1.34761 * 112.39693 * 179.87050 * 10 9 7 13 13 C 1.46601 * 106.32887 * 0.39392 * 12 10 9 14 14 C 1.52248 * 111.12180 * 119.32457 * 13 12 10 15 15 C 1.53260 * 109.36502 * 172.05414 * 14 13 12 16 16 C 1.53134 * 109.10456 * 290.84365 * 15 14 13 17 17 C 1.51350 * 108.98612 * 49.95762 * 16 15 14 18 18 S 1.75778 * 125.42039 * 162.82295 * 17 16 15 19 19 C 1.75722 * 91.09543 * 179.97438 * 18 17 16 20 20 C 1.32904 * 109.59508 * 359.97438 * 19 18 17 21 21 C 1.34844 * 124.60889 * 342.82415 * 17 16 15 22 22 C 1.34976 * 124.20299 * 327.69146 * 9 7 2 23 23 O 1.21234 * 127.30804 * 359.90578 * 22 9 7 24 24 H 0.97003 * 120.00072 * 174.35233 * 1 2 3 25 25 H 0.97006 * 126.83334 * 180.18423 * 12 10 9 26 26 H 1.08993 * 109.48625 * 292.02272 * 14 13 12 27 27 H 1.09002 * 109.48729 * 52.07129 * 14 13 12 28 28 H 1.08997 * 109.53299 * 50.72607 * 15 14 13 29 29 H 1.09003 * 109.53150 * 170.87986 * 15 14 13 30 30 H 1.09000 * 109.55089 * 169.81321 * 16 15 14 31 31 H 1.09009 * 109.54792 * 290.10841 * 16 15 14 32 32 H 1.07999 * 125.20402 * 179.97438 * 19 18 17 33 33 H 1.08004 * 122.12669 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 3.7077 1.3465 0.0006 5 1 1.8890 2.3965 1.2126 6 1 1.8890 2.3966 -1.2125 7 6 2.0083 -1.2028 -0.0005 8 1 3.0100 -1.2479 -0.4018 9 7 1.4205 -2.3364 0.5099 10 6 1.6458 -3.5735 0.0497 11 8 2.3972 -3.8257 -0.8714 12 7 0.9480 -4.5077 0.7252 13 6 0.1709 -3.7886 1.7392 14 6 -1.3231 -4.0026 1.5392 15 6 -2.0857 -3.4036 2.7260 16 6 -1.8071 -4.2433 3.9760 17 6 -0.3124 -4.4347 4.1175 18 16 0.5152 -4.9447 5.5820 19 6 2.0717 -4.8654 4.7704 20 6 1.8980 -4.4815 3.5099 21 6 0.5822 -4.2364 3.1283 22 6 0.5403 -2.3396 1.5332 23 8 0.1333 -1.3819 2.1553 24 1 -0.4850 -0.8360 -0.0827 25 1 0.9557 -5.4651 0.5692 26 1 -1.6405 -3.5129 0.6186 27 1 -1.5320 -5.0704 1.4740 28 1 -1.7527 -2.3793 2.8936 29 1 -3.1546 -3.4091 2.5127 30 1 -2.1938 -3.7280 4.8552 31 1 -2.2917 -5.2148 3.8782 32 1 3.0238 -5.0938 5.2261 33 1 2.7255 -4.3663 2.8254 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005680330.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:49 Heat of formation + Delta-G solvation = -7.414063 kcal Electronic energy + Delta-G solvation = -22076.463220 eV Core-core repulsion = 18808.646532 eV Total energy + Delta-G solvation = -3267.816688 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.067 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.80312 -38.59721 -37.23314 -35.23330 -34.80071 -33.97479 -31.45408 -29.45684 -28.54527 -25.49164 -23.81225 -23.50050 -21.52959 -21.21178 -20.37848 -18.21393 -17.95850 -17.07084 -16.58464 -16.00289 -15.26614 -14.77944 -14.58171 -14.30042 -14.25661 -13.91965 -13.73292 -13.31819 -12.99847 -12.77613 -12.62765 -12.12679 -12.06806 -11.72918 -11.24408 -11.02201 -10.94010 -10.89440 -10.53447 -10.32970 -10.19277 -9.76551 -9.25483 -9.00534 -8.86995 -8.46368 -8.28555 -8.09211 -6.76297 -4.23310 1.04735 1.65819 2.01150 2.62272 2.77553 3.33878 3.39843 3.49884 3.57256 4.09855 4.24136 4.43920 4.65358 4.72397 4.94397 5.09588 5.15287 5.20167 5.26309 5.39172 5.50051 5.71236 5.79162 5.86922 5.98375 6.12820 6.19674 6.37659 6.44862 6.52208 6.61824 7.46580 7.69667 7.81628 8.31425 8.45409 8.77636 9.16113 9.57760 10.55407 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.019463 B = 0.006510 C = 0.006311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.247714 B = 4300.250334 C = 4435.294689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.030 3.970 3 Si 1.089 2.911 4 H -0.282 1.282 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.435 4.435 8 H 0.098 0.902 9 N -0.411 5.411 10 C 0.675 3.325 11 O -0.563 6.563 12 N -0.734 5.734 13 C 0.186 3.814 14 C -0.106 4.106 15 C -0.122 4.122 16 C -0.046 4.046 17 C -0.155 4.155 18 S 0.091 5.909 19 C -0.218 4.218 20 C -0.108 4.108 21 C -0.099 4.099 22 C 0.484 3.516 23 O -0.462 6.462 24 H 0.272 0.728 25 H 0.424 0.576 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.165 0.835 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 -10.228 9.605 14.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.183 4.183 3 Si 0.913 3.087 4 H -0.207 1.207 5 H -0.204 1.204 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.116 0.884 9 N -0.143 5.143 10 C 0.379 3.621 11 O -0.439 6.439 12 N -0.398 5.398 13 C 0.091 3.909 14 C -0.145 4.145 15 C -0.161 4.161 16 C -0.085 4.085 17 C -0.273 4.273 18 S 0.356 5.644 19 C -0.353 4.353 20 C -0.138 4.138 21 C -0.112 4.112 22 C 0.271 3.729 23 O -0.333 6.333 24 H 0.083 0.917 25 H 0.267 0.733 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.182 0.818 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.991 -8.487 10.979 14.440 hybrid contribution 0.807 -1.979 -1.564 2.648 sum -3.185 -10.466 9.415 14.434 Atomic orbital electron populations 1.70560 1.07306 1.31186 1.36871 1.26501 0.95909 1.02592 0.93328 0.83246 0.74676 0.73342 0.77386 1.20689 1.20423 1.20948 1.20320 1.01792 0.85254 1.48639 0.88426 1.42134 1.38450 1.06559 1.27174 1.16558 0.81610 0.82120 0.81847 1.90823 1.40313 1.82611 1.30190 1.45503 1.48469 1.08890 1.36898 1.19584 0.93381 0.92493 0.85399 1.21527 0.91111 1.01917 0.99956 1.21708 1.00172 1.01579 0.92675 1.20316 0.88002 1.00663 0.99516 1.24875 0.99773 1.06902 0.95794 1.83905 0.98767 1.67959 1.13777 1.25226 1.00886 1.11170 0.97970 1.19939 0.96981 1.00679 0.96176 1.19203 0.92590 1.04540 0.94883 1.20044 0.82984 0.88724 0.81133 1.90672 1.54911 1.38987 1.48764 0.91748 0.73337 0.90433 0.90611 0.88863 0.90489 0.90171 0.90201 0.81793 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.26 12.14 55.49 0.67 -23.59 16 2 C 0.03 0.84 4.66 -17.50 -0.08 0.76 16 3 Si 1.09 24.79 29.99 -169.99 -5.10 19.69 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.44 -12.47 9.39 -14.76 -0.14 -12.61 16 8 H 0.10 2.84 7.95 -52.49 -0.42 2.42 16 9 N -0.41 -10.84 2.54 -65.66 -0.17 -11.01 16 10 C 0.67 16.34 8.58 -87.71 -0.75 15.59 16 11 O -0.56 -15.15 17.63 5.35 0.09 -15.06 16 12 N -0.73 -13.67 5.60 -54.60 -0.31 -13.98 16 13 C 0.19 3.47 0.99 -133.87 -0.13 3.34 16 14 C -0.11 -1.66 5.04 -26.98 -0.14 -1.80 16 15 C -0.12 -1.74 5.92 -26.53 -0.16 -1.90 16 16 C -0.05 -0.56 6.25 -27.49 -0.17 -0.73 16 17 C -0.16 -2.28 6.37 -35.19 -0.22 -2.50 16 18 S 0.09 1.14 23.31 -107.50 -2.51 -1.37 16 19 C -0.22 -2.96 11.20 28.89 0.32 -2.64 16 20 C -0.11 -1.76 9.67 -41.07 -0.40 -2.16 16 21 C -0.10 -1.68 4.85 -105.02 -0.51 -2.19 16 22 C 0.48 11.78 5.40 -10.77 -0.06 11.72 16 23 O -0.46 -12.42 13.82 5.60 0.08 -12.34 16 24 H 0.27 8.03 7.05 -40.82 -0.29 7.75 16 25 H 0.42 6.44 8.96 -40.82 -0.37 6.07 16 26 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 27 H 0.08 0.97 8.12 -51.93 -0.42 0.54 16 28 H 0.09 1.67 6.23 -51.93 -0.32 1.35 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.16 1.79 8.06 -52.49 -0.42 1.36 16 33 H 0.14 2.35 8.06 -52.48 -0.42 1.93 16 LS Contribution 291.64 15.07 4.40 4.40 Total: -1.00 -33.68 291.64 -8.42 -42.09 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -3.15 Total: 6.29 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -2.44 Total: 4.88 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 0.20 Total: -48.58 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: 0.17 Total: -27.40 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.10 Total: 19.69 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.51 Total: -1.37 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.68 -8.42 -42.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005680330.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.679 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds