Wall clock time and date at job start Tue Mar 31 2020 02:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31380 * 1 3 3 Si 1.86805 * 119.99925 * 2 1 4 4 H 1.48492 * 109.47154 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46862 * 59.99838 * 3 2 1 6 6 H 1.48505 * 109.47167 * 300.00256 * 3 2 1 7 7 C 1.38893 * 120.00279 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00286 * 154.59655 * 7 2 1 9 9 N 1.37518 * 119.99708 * 334.59292 * 7 2 1 10 10 C 1.33906 * 124.19559 * 147.38367 * 9 7 2 11 11 O 1.21517 * 123.80414 * 0.02562 * 10 9 7 12 12 N 1.34761 * 112.39693 * 179.87050 * 10 9 7 13 13 C 1.46601 * 106.32887 * 0.39392 * 12 10 9 14 14 C 1.52248 * 111.12180 * 119.32457 * 13 12 10 15 15 C 1.53260 * 109.36502 * 172.05414 * 14 13 12 16 16 C 1.53134 * 109.10456 * 290.84365 * 15 14 13 17 17 C 1.51350 * 108.98612 * 49.95762 * 16 15 14 18 18 S 1.75778 * 125.42039 * 162.82295 * 17 16 15 19 19 C 1.75722 * 91.09543 * 179.97438 * 18 17 16 20 20 C 1.32904 * 109.59508 * 359.97438 * 19 18 17 21 21 C 1.34844 * 124.60889 * 342.82415 * 17 16 15 22 22 C 1.34976 * 124.20299 * 327.69146 * 9 7 2 23 23 O 1.21234 * 127.30804 * 359.90578 * 22 9 7 24 24 H 0.97003 * 120.00072 * 174.35233 * 1 2 3 25 25 H 0.97006 * 126.83334 * 180.18423 * 12 10 9 26 26 H 1.08993 * 109.48625 * 292.02272 * 14 13 12 27 27 H 1.09002 * 109.48729 * 52.07129 * 14 13 12 28 28 H 1.08997 * 109.53299 * 50.72607 * 15 14 13 29 29 H 1.09003 * 109.53150 * 170.87986 * 15 14 13 30 30 H 1.09000 * 109.55089 * 169.81321 * 16 15 14 31 31 H 1.09009 * 109.54792 * 290.10841 * 16 15 14 32 32 H 1.07999 * 125.20402 * 179.97438 * 19 18 17 33 33 H 1.08004 * 122.12669 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 3.7077 1.3465 0.0006 5 1 1.8890 2.3965 1.2126 6 1 1.8890 2.3966 -1.2125 7 6 2.0083 -1.2028 -0.0005 8 1 3.0100 -1.2479 -0.4018 9 7 1.4205 -2.3364 0.5099 10 6 1.6458 -3.5735 0.0497 11 8 2.3972 -3.8257 -0.8714 12 7 0.9480 -4.5077 0.7252 13 6 0.1709 -3.7886 1.7392 14 6 -1.3231 -4.0026 1.5392 15 6 -2.0857 -3.4036 2.7260 16 6 -1.8071 -4.2433 3.9760 17 6 -0.3124 -4.4347 4.1175 18 16 0.5152 -4.9447 5.5820 19 6 2.0717 -4.8654 4.7704 20 6 1.8980 -4.4815 3.5099 21 6 0.5822 -4.2364 3.1283 22 6 0.5403 -2.3396 1.5332 23 8 0.1333 -1.3819 2.1553 24 1 -0.4850 -0.8360 -0.0827 25 1 0.9557 -5.4651 0.5692 26 1 -1.6405 -3.5129 0.6186 27 1 -1.5320 -5.0704 1.4740 28 1 -1.7527 -2.3793 2.8936 29 1 -3.1546 -3.4091 2.5127 30 1 -2.1938 -3.7280 4.8552 31 1 -2.2917 -5.2148 3.8782 32 1 3.0238 -5.0938 5.2261 33 1 2.7255 -4.3663 2.8254 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005680330.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:49 Heat of formation + Delta-G solvation = -30.781355 kcal Electronic energy + Delta-G solvation = -22077.476502 eV Core-core repulsion = 18808.646532 eV Total energy + Delta-G solvation = -3268.829969 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.56244 -40.05673 -39.12996 -36.85144 -36.47880 -35.62904 -33.46014 -30.73754 -29.81720 -27.52902 -25.30033 -24.76682 -23.21540 -22.88974 -21.78450 -19.94438 -19.58528 -18.51556 -18.13316 -17.66427 -17.01690 -16.44010 -16.38921 -15.96098 -15.60562 -15.43393 -15.24067 -14.97871 -14.28213 -14.23817 -14.13968 -13.71337 -13.39583 -13.20964 -12.79821 -12.52879 -12.29547 -12.13168 -12.05972 -11.95130 -11.75654 -11.66631 -11.28273 -10.79555 -10.52295 -10.28738 -9.55885 -9.33781 -8.99290 -6.46623 -0.08567 0.55028 0.79854 0.97245 1.35083 1.49008 1.55461 1.76745 1.89677 2.26089 2.37125 2.59132 3.02096 3.26786 3.46883 3.57873 3.89854 4.01519 4.08789 4.27543 4.37862 4.52287 4.67439 4.72719 4.76087 4.91587 5.01031 5.04677 5.27866 5.32290 5.42346 5.49319 5.68419 5.91870 6.18828 6.42770 6.91293 7.04862 7.57895 8.32405 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.019463 B = 0.006510 C = 0.006311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.247714 B = 4300.250334 C = 4435.294689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C -0.008 4.008 3 Si 1.132 2.868 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.464 4.464 8 H 0.081 0.919 9 N -0.436 5.436 10 C 0.670 3.330 11 O -0.600 6.600 12 N -0.704 5.704 13 C 0.197 3.803 14 C -0.106 4.106 15 C -0.119 4.119 16 C -0.044 4.044 17 C -0.157 4.157 18 S 0.166 5.834 19 C -0.215 4.215 20 C -0.139 4.139 21 C -0.133 4.133 22 C 0.481 3.519 23 O -0.495 6.495 24 H 0.257 0.743 25 H 0.443 0.557 26 H 0.057 0.943 27 H 0.116 0.884 28 H 0.050 0.950 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.190 0.810 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 -11.845 12.061 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.216 4.216 3 Si 0.949 3.051 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.589 4.589 8 H 0.099 0.901 9 N -0.169 5.169 10 C 0.374 3.626 11 O -0.480 6.480 12 N -0.369 5.369 13 C 0.104 3.896 14 C -0.144 4.144 15 C -0.159 4.159 16 C -0.083 4.083 17 C -0.276 4.276 18 S 0.432 5.568 19 C -0.350 4.350 20 C -0.169 4.169 21 C -0.146 4.146 22 C 0.270 3.730 23 O -0.368 6.368 24 H 0.067 0.933 25 H 0.290 0.710 26 H 0.075 0.925 27 H 0.134 0.866 28 H 0.069 0.931 29 H 0.126 0.874 30 H 0.116 0.884 31 H 0.136 0.864 32 H 0.207 0.793 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.291 -10.166 13.455 17.674 hybrid contribution 1.188 -1.571 -2.187 2.944 sum -4.103 -11.737 11.268 16.780 Atomic orbital electron populations 1.70676 1.07956 1.30203 1.39036 1.28010 0.96029 1.05688 0.91872 0.82767 0.74395 0.69737 0.78163 1.19056 1.20003 1.18988 1.20408 1.01642 0.86929 1.49905 0.90141 1.42391 1.39370 1.06845 1.28343 1.16649 0.81663 0.82454 0.81875 1.90776 1.42097 1.83165 1.31989 1.45271 1.46875 1.09058 1.35720 1.19550 0.95226 0.88122 0.86704 1.21630 0.88512 1.04354 0.99901 1.21682 1.01554 0.99431 0.93199 1.20482 0.86555 1.02325 0.98903 1.25347 1.01055 1.04884 0.96321 1.83690 0.96459 1.65747 1.10945 1.25602 1.03148 1.09095 0.97152 1.19865 0.96347 1.03411 0.97296 1.19025 0.93542 1.07780 0.94264 1.20962 0.81214 0.91148 0.79669 1.90626 1.55568 1.41060 1.49575 0.93312 0.71046 0.92452 0.86551 0.93147 0.87408 0.88361 0.86372 0.79297 0.86987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -51.52 12.14 21.65 0.26 -51.25 16 2 C -0.01 -0.48 4.66 84.92 0.40 -0.08 16 3 Si 1.13 50.88 29.99 68.60 2.06 52.94 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 5 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 7 C -0.46 -27.96 9.39 83.96 0.79 -27.17 16 8 H 0.08 4.97 7.95 -2.91 -0.02 4.94 16 9 N -0.44 -24.19 2.54 -598.71 -1.52 -25.71 16 10 C 0.67 33.85 8.58 179.33 1.54 35.39 16 11 O -0.60 -33.82 17.63 -3.77 -0.07 -33.89 16 12 N -0.70 -26.51 5.60 -444.95 -2.49 -29.00 16 13 C 0.20 7.37 0.99 2.22 0.00 7.37 16 14 C -0.11 -3.14 5.04 30.43 0.15 -2.99 16 15 C -0.12 -3.14 5.92 30.73 0.18 -2.96 16 16 C -0.04 -0.89 6.25 30.10 0.19 -0.70 16 17 C -0.16 -4.11 6.37 25.11 0.16 -3.95 16 18 S 0.17 3.48 23.31 -56.49 -1.32 2.16 16 19 C -0.21 -5.32 11.20 66.65 0.75 -4.57 16 20 C -0.14 -4.47 9.67 21.32 0.21 -4.27 16 21 C -0.13 -4.35 4.85 -20.12 -0.10 -4.44 16 22 C 0.48 24.29 5.40 87.70 0.47 24.76 16 23 O -0.50 -27.74 13.82 -2.89 -0.04 -27.78 16 24 H 0.26 15.98 7.05 -92.71 -0.65 15.32 16 25 H 0.44 13.14 8.96 -92.70 -0.83 12.31 16 26 H 0.06 1.93 8.10 -2.39 -0.02 1.91 16 27 H 0.12 2.53 8.12 -2.39 -0.02 2.51 16 28 H 0.05 1.79 6.23 -2.39 -0.01 1.78 16 29 H 0.11 2.16 8.14 -2.39 -0.02 2.15 16 30 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.19 3.55 8.06 -2.91 -0.02 3.53 16 33 H 0.11 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -78.68 291.64 2.08 -76.60 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.45 Total: 19.55 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 4.74 Total: 16.39 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -3.75 Total: -105.97 kcal Atomic # 8 Polarization: -61.56 SS G_CDS: -0.11 Total: -61.66 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 2.06 Total: 52.94 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -1.32 Total: 2.16 kcal Total: -78.68 2.08 -76.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005680330.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.818 kcal (2) G-P(sol) polarization free energy of solvation -78.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds