Wall clock time and date at job start Tue Mar 31 2020 02:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99686 * 2 1 4 4 C 1.38734 * 120.05067 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94237 * 179.74240 * 4 3 2 6 6 C 1.38264 * 120.05437 * 0.25588 * 5 4 3 7 7 C 1.50706 * 119.94244 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.46986 * 90.00315 * 7 6 5 9 9 N 1.30267 * 126.19881 * 90.02297 * 8 7 6 10 10 N 1.28661 * 109.53708 * 180.02562 * 9 8 7 11 11 C 1.31231 * 109.28508 * 359.97438 * 10 9 8 12 12 S 1.76193 * 126.37962 * 180.02562 * 11 10 9 13 13 C 1.76195 * 100.00061 * 0.02686 * 12 11 10 14 14 H 1.08000 * 119.99998 * 359.97438 * 13 12 11 15 15 C 1.38686 * 120.00115 * 180.02562 * 13 12 11 16 16 N 1.31620 * 120.00016 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00123 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47135 * 89.99832 * 17 15 13 19 19 H 1.48500 * 109.47345 * 210.00242 * 17 15 13 20 20 H 1.48501 * 109.46842 * 330.00082 * 17 15 13 21 21 O 1.34631 * 126.20002 * 269.71452 * 8 7 6 22 22 C 1.38268 * 120.11230 * 359.97438 * 6 5 4 23 23 C 1.38137 * 120.05792 * 359.97438 * 22 6 5 24 24 H 1.09000 * 109.46994 * 59.99845 * 1 2 3 25 25 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47195 * 300.00308 * 1 2 3 27 27 H 1.08002 * 120.03267 * 0.02580 * 4 3 2 28 28 H 1.07999 * 119.97317 * 180.23157 * 5 4 3 29 29 H 1.09006 * 109.46840 * 210.00137 * 7 6 5 30 30 H 1.08995 * 109.47647 * 330.00094 * 7 6 5 31 31 H 0.96998 * 119.99865 * 179.97438 * 16 15 13 32 32 H 1.08007 * 119.96697 * 180.02562 * 22 6 5 33 33 H 1.08000 * 120.03391 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0059 6 6 3.3019 3.6758 -0.0054 7 6 3.9861 5.0186 -0.0107 8 6 4.2087 5.4633 -1.4333 9 7 3.3859 6.1679 -2.1568 10 7 3.8964 6.3636 -3.3214 11 6 5.0732 5.7858 -3.3815 12 16 6.1617 5.7734 -4.7669 13 6 5.2083 6.7117 -5.9137 14 1 4.2399 7.0934 -5.6258 15 6 5.7010 6.9591 -7.1862 16 7 6.8809 6.4934 -7.5372 17 14 4.6898 7.9532 -8.4023 18 1 5.0236 9.3935 -8.2628 19 1 4.9972 7.5055 -9.7844 20 1 3.2448 7.7510 -8.1263 21 8 5.2965 5.2092 -2.1848 22 6 1.9211 3.6048 -0.0001 23 6 1.2915 2.3752 0.0042 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 4.0209 0.3800 -0.0014 28 1 5.1345 2.5750 -0.0101 29 1 3.3600 5.7474 0.5041 30 1 4.9459 4.9394 0.4996 31 1 7.2253 6.6661 -8.4274 32 1 1.3342 4.5115 -0.0001 33 1 0.2129 2.3202 0.0080 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005788716.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:04 Heat of formation + Delta-G solvation = 16.685057 kcal Electronic energy + Delta-G solvation = -19525.910036 eV Core-core repulsion = 16259.138364 eV Total energy + Delta-G solvation = -3266.771671 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.08324 -40.26155 -37.87756 -35.19891 -33.31861 -32.82046 -31.20207 -29.92224 -27.95483 -26.45674 -25.69291 -23.20340 -22.64684 -22.27425 -20.95836 -18.43456 -18.31954 -16.72505 -16.64565 -16.39763 -15.93400 -15.54913 -15.22657 -15.04790 -14.53834 -14.36398 -13.98995 -13.60163 -13.22938 -12.68862 -12.37267 -12.16398 -11.85634 -11.53444 -11.51205 -11.27425 -11.21953 -11.19358 -10.93413 -10.86193 -10.43964 -10.19569 -9.85172 -9.10209 -9.07491 -9.02646 -8.26046 -7.00869 -6.61461 -4.38824 1.19872 1.26295 1.91773 2.07195 3.07368 3.11721 3.16664 3.22344 3.25483 3.46126 3.80683 3.92579 4.59215 4.70612 4.76993 4.80563 4.83358 4.87055 4.90195 4.96117 5.19575 5.24995 5.27407 5.44280 5.57286 5.61359 5.91626 6.05225 6.10696 6.16346 6.22409 6.35409 6.52680 6.63146 7.21336 7.43253 8.21700 8.89884 9.16417 10.46127 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.022812 B = 0.003314 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.153495 B = 8447.315229 C = 8763.367724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.126 3.874 4 C -0.152 4.152 5 C -0.065 4.065 6 C -0.124 4.124 7 C 0.035 3.965 8 C 0.110 3.890 9 N -0.275 5.275 10 N -0.318 5.318 11 C 0.136 3.864 12 S 0.206 5.794 13 C -0.551 4.551 14 H 0.108 0.892 15 C 0.080 3.920 16 N -0.873 5.873 17 Si 0.937 3.063 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.265 1.265 21 O -0.224 6.224 22 C -0.059 4.059 23 C -0.209 4.209 24 H 0.056 0.944 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.278 0.722 32 H 0.130 0.870 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.601 -9.402 15.663 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.081 3.919 4 C -0.171 4.171 5 C -0.083 4.083 6 C -0.125 4.125 7 C -0.004 4.004 8 C -0.107 4.107 9 N -0.123 5.123 10 N -0.171 5.171 11 C -0.177 4.177 12 S 0.440 5.560 13 C -0.699 4.699 14 H 0.126 0.874 15 C -0.130 4.130 16 N -0.507 5.507 17 Si 0.762 3.238 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.189 1.189 21 O -0.108 6.108 22 C -0.077 4.077 23 C -0.228 4.228 24 H 0.075 0.925 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.149 0.851 28 H 0.151 0.849 29 H 0.129 0.871 30 H 0.117 0.883 31 H 0.088 0.912 32 H 0.148 0.852 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.309 -9.410 14.928 19.100 hybrid contribution -0.968 0.557 -0.350 1.171 sum -8.278 -8.854 14.578 18.959 Atomic orbital electron populations 1.23055 0.78429 1.03853 1.01467 1.86061 1.21389 1.27055 1.88736 1.19076 0.92429 0.84109 0.96267 1.20396 0.91334 0.98626 1.06734 1.20925 1.00116 0.90901 0.96397 1.19552 0.93752 0.94147 1.05094 1.18738 1.02279 0.94337 0.85044 1.27267 0.83909 1.01793 0.97742 1.73981 1.25691 1.13506 0.99145 1.74902 1.07022 1.23688 1.11512 1.31500 1.00057 0.95023 0.91116 1.83900 1.15197 1.62762 0.94125 1.23357 1.08597 1.39347 0.98580 0.87406 1.25105 0.95429 0.95213 0.97283 1.69923 1.16834 1.42529 1.21444 0.85847 0.80213 0.79451 0.78307 1.19700 1.20450 1.18871 1.84873 1.41171 1.62397 1.22347 1.20896 0.93809 0.97400 0.95623 1.21206 1.00039 0.92243 1.09274 0.92533 0.88305 0.92652 0.85056 0.84941 0.87137 0.88292 0.91212 0.85183 0.85391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.61 10.50 -19.44 -0.20 -3.82 16 3 C 0.13 1.55 6.69 -39.22 -0.26 1.28 16 4 C -0.15 -1.84 9.99 -39.43 -0.39 -2.23 16 5 C -0.07 -0.79 9.69 -39.61 -0.38 -1.18 16 6 C -0.12 -1.58 5.12 -104.60 -0.54 -2.12 16 7 C 0.03 0.44 5.97 -29.03 -0.17 0.27 16 8 C 0.11 2.08 7.71 -12.94 -0.10 1.98 16 9 N -0.28 -6.09 12.21 32.60 0.40 -5.69 16 10 N -0.32 -8.03 11.06 30.32 0.34 -7.70 16 11 C 0.14 3.29 8.52 52.51 0.45 3.74 16 12 S 0.21 5.21 21.89 -107.50 -2.35 2.86 16 13 C -0.55 -15.21 9.37 30.90 0.29 -14.92 16 14 H 0.11 3.06 6.92 -52.49 -0.36 2.70 16 15 C 0.08 2.14 5.49 -17.48 -0.10 2.04 16 16 N -0.87 -23.86 13.22 55.48 0.73 -23.12 16 17 Si 0.94 20.81 29.55 -169.99 -5.02 15.79 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 21 O -0.22 -4.76 10.90 3.70 0.04 -4.72 16 22 C -0.06 -0.72 9.69 -39.61 -0.38 -1.11 16 23 C -0.21 -2.41 9.04 -39.44 -0.36 -2.77 16 24 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 25 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 27 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.11 1.17 8.08 -51.93 -0.42 0.75 16 30 H 0.10 1.00 8.08 -51.93 -0.42 0.58 16 31 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 33 H 0.13 1.18 6.30 -52.49 -0.33 0.85 16 LS Contribution 313.09 15.07 4.72 4.72 Total: -1.00 -32.09 313.09 -5.47 -37.56 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -3.16 Total: -2.04 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -0.96 Total: -13.82 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 1.47 Total: -36.51 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.16 Total: -8.54 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 5.21 SS G_CDS: -2.35 Total: 2.86 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.09 -5.47 -37.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005788716.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.242 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds