Wall clock time and date at job start Tue Mar 31 2020 02:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99686 * 2 1 4 4 C 1.38734 * 120.05067 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94237 * 179.74240 * 4 3 2 6 6 C 1.38264 * 120.05437 * 0.25588 * 5 4 3 7 7 C 1.50706 * 119.94244 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.46986 * 90.00315 * 7 6 5 9 9 N 1.30267 * 126.19881 * 90.02297 * 8 7 6 10 10 N 1.28661 * 109.53708 * 180.02562 * 9 8 7 11 11 C 1.31231 * 109.28508 * 359.97438 * 10 9 8 12 12 S 1.76193 * 126.37962 * 180.02562 * 11 10 9 13 13 C 1.76195 * 100.00061 * 0.02686 * 12 11 10 14 14 H 1.08000 * 119.99998 * 359.97438 * 13 12 11 15 15 C 1.38686 * 120.00115 * 180.02562 * 13 12 11 16 16 N 1.31620 * 120.00016 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00123 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47135 * 89.99832 * 17 15 13 19 19 H 1.48500 * 109.47345 * 210.00242 * 17 15 13 20 20 H 1.48501 * 109.46842 * 330.00082 * 17 15 13 21 21 O 1.34631 * 126.20002 * 269.71452 * 8 7 6 22 22 C 1.38268 * 120.11230 * 359.97438 * 6 5 4 23 23 C 1.38137 * 120.05792 * 359.97438 * 22 6 5 24 24 H 1.09000 * 109.46994 * 59.99845 * 1 2 3 25 25 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47195 * 300.00308 * 1 2 3 27 27 H 1.08002 * 120.03267 * 0.02580 * 4 3 2 28 28 H 1.07999 * 119.97317 * 180.23157 * 5 4 3 29 29 H 1.09006 * 109.46840 * 210.00137 * 7 6 5 30 30 H 1.08995 * 109.47647 * 330.00094 * 7 6 5 31 31 H 0.96998 * 119.99865 * 179.97438 * 16 15 13 32 32 H 1.08007 * 119.96697 * 180.02562 * 22 6 5 33 33 H 1.08000 * 120.03391 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0059 6 6 3.3019 3.6758 -0.0054 7 6 3.9861 5.0186 -0.0107 8 6 4.2087 5.4633 -1.4333 9 7 3.3859 6.1679 -2.1568 10 7 3.8964 6.3636 -3.3214 11 6 5.0732 5.7858 -3.3815 12 16 6.1617 5.7734 -4.7669 13 6 5.2083 6.7117 -5.9137 14 1 4.2399 7.0934 -5.6258 15 6 5.7010 6.9591 -7.1862 16 7 6.8809 6.4934 -7.5372 17 14 4.6898 7.9532 -8.4023 18 1 5.0236 9.3935 -8.2628 19 1 4.9972 7.5055 -9.7844 20 1 3.2448 7.7510 -8.1263 21 8 5.2965 5.2092 -2.1848 22 6 1.9211 3.6048 -0.0001 23 6 1.2915 2.3752 0.0042 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 4.0209 0.3800 -0.0014 28 1 5.1345 2.5750 -0.0101 29 1 3.3600 5.7474 0.5041 30 1 4.9459 4.9394 0.4996 31 1 7.2253 6.6661 -8.4274 32 1 1.3342 4.5115 -0.0001 33 1 0.2129 2.3202 0.0080 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005788716.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:04 Heat of formation + Delta-G solvation = -6.794121 kcal Electronic energy + Delta-G solvation = -19526.928169 eV Core-core repulsion = 16259.138364 eV Total energy + Delta-G solvation = -3267.789805 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.83710 -41.11737 -38.74895 -36.97060 -34.85262 -34.48594 -32.09332 -31.32405 -28.84818 -27.94333 -27.24620 -24.90740 -23.73401 -23.57370 -22.05648 -20.37332 -19.15465 -18.52025 -18.30045 -17.35137 -17.10646 -16.96575 -16.67720 -16.40337 -15.86478 -15.28984 -15.04512 -14.80021 -14.47055 -13.54738 -13.53025 -13.34788 -13.30921 -13.10131 -13.07123 -12.95308 -12.70209 -12.67864 -12.21966 -12.04361 -11.88750 -11.74929 -11.64350 -11.02577 -10.93209 -10.00499 -9.19222 -8.95266 -8.61764 -6.45938 0.08532 0.22139 0.35058 0.39728 1.35873 1.38213 1.47463 1.52143 1.95281 2.11414 2.34177 2.72661 2.80561 2.94237 3.46443 3.76247 3.80789 3.91856 4.09039 4.21604 4.27532 4.36755 4.37338 4.45155 4.54216 4.62336 4.70154 4.74246 4.90490 5.05857 5.22570 5.32523 5.37975 5.57535 5.74880 6.11218 6.39263 6.85091 7.40295 8.47411 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.022812 B = 0.003314 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.153495 B = 8447.315229 C = 8763.367724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.118 3.882 4 C -0.167 4.167 5 C -0.070 4.070 6 C -0.141 4.141 7 C 0.036 3.964 8 C 0.145 3.855 9 N -0.308 5.308 10 N -0.344 5.344 11 C 0.125 3.875 12 S 0.188 5.812 13 C -0.577 4.577 14 H 0.092 0.908 15 C 0.039 3.961 16 N -0.899 5.899 17 Si 1.001 2.999 18 H -0.262 1.262 19 H -0.263 1.263 20 H -0.269 1.269 21 O -0.223 6.223 22 C -0.068 4.068 23 C -0.214 4.214 24 H 0.058 0.942 25 H 0.120 0.880 26 H 0.069 0.931 27 H 0.142 0.858 28 H 0.147 0.853 29 H 0.137 0.863 30 H 0.131 0.869 31 H 0.286 0.714 32 H 0.140 0.860 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.519 -9.705 16.685 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.073 3.927 4 C -0.185 4.185 5 C -0.088 4.088 6 C -0.142 4.142 7 C -0.002 4.002 8 C -0.072 4.072 9 N -0.153 5.153 10 N -0.197 5.197 11 C -0.190 4.190 12 S 0.421 5.579 13 C -0.724 4.724 14 H 0.110 0.890 15 C -0.169 4.169 16 N -0.534 5.534 17 Si 0.821 3.179 18 H -0.187 1.187 19 H -0.187 1.187 20 H -0.194 1.194 21 O -0.106 6.106 22 C -0.086 4.086 23 C -0.233 4.233 24 H 0.076 0.924 25 H 0.138 0.862 26 H 0.087 0.913 27 H 0.160 0.840 28 H 0.165 0.835 29 H 0.155 0.845 30 H 0.149 0.851 31 H 0.095 0.905 32 H 0.158 0.842 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.250 -9.721 15.987 20.448 hybrid contribution -0.788 0.508 -0.437 1.034 sum -9.038 -9.213 15.550 20.208 Atomic orbital electron populations 1.23349 0.76479 1.05633 1.02204 1.86046 1.23478 1.26762 1.88535 1.19305 0.92796 0.84732 0.95871 1.20648 0.91777 0.99187 1.06924 1.21160 1.00966 0.90812 0.95874 1.19583 0.94069 0.94021 1.06518 1.19215 1.04745 0.95039 0.81248 1.28645 0.81716 0.97966 0.98861 1.73946 1.26655 1.15950 0.98797 1.74845 1.07508 1.24058 1.13249 1.31210 0.99940 0.96059 0.91801 1.83649 1.15856 1.63749 0.94678 1.23464 1.08520 1.40581 0.99878 0.89020 1.25987 0.96452 0.95882 0.98556 1.69975 1.17924 1.43192 1.22286 0.84919 0.78153 0.78274 0.76510 1.18712 1.18743 1.19383 1.84902 1.42067 1.61980 1.21665 1.21135 0.93956 0.98124 0.95361 1.21454 1.01208 0.91820 1.08797 0.92369 0.86164 0.91262 0.84041 0.83538 0.84477 0.85057 0.90464 0.84246 0.83387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.08 10.50 -92.47 -0.97 -8.05 16 3 C 0.12 2.73 6.69 22.51 0.15 2.88 16 4 C -0.17 -3.80 9.99 22.37 0.22 -3.58 16 5 C -0.07 -1.57 9.69 22.25 0.22 -1.36 16 6 C -0.14 -3.27 5.12 -19.85 -0.10 -3.37 16 7 C 0.04 0.80 5.97 29.10 0.17 0.97 16 8 C 0.15 5.24 7.71 88.34 0.68 5.92 16 9 N -0.31 -13.43 12.21 -165.20 -2.02 -15.44 16 10 N -0.34 -17.55 11.06 -171.91 -1.90 -19.45 16 11 C 0.12 6.12 8.52 130.33 1.11 7.23 16 12 S 0.19 9.71 21.89 -56.49 -1.24 8.48 16 13 C -0.58 -32.55 9.37 67.93 0.64 -31.91 16 14 H 0.09 5.36 6.92 -2.91 -0.02 5.34 16 15 C 0.04 2.08 5.49 84.83 0.47 2.55 16 16 N -0.90 -49.33 13.22 21.63 0.29 -49.04 16 17 Si 1.00 42.50 29.55 68.60 2.03 44.52 16 18 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 19 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 O -0.22 -9.30 10.90 -9.67 -0.11 -9.41 16 22 C -0.07 -1.52 9.69 22.25 0.22 -1.31 16 23 C -0.21 -4.56 9.04 22.36 0.20 -4.35 16 24 H 0.06 0.72 7.67 -2.39 -0.02 0.70 16 25 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 0.69 7.65 -2.39 -0.02 0.67 16 27 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 28 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 29 H 0.14 2.41 8.08 -2.38 -0.02 2.39 16 30 H 0.13 2.15 8.08 -2.39 -0.02 2.13 16 31 H 0.29 14.36 8.31 -92.71 -0.77 13.59 16 32 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 33 H 0.15 2.41 6.30 -2.91 -0.02 2.39 16 Total: -1.00 -69.75 313.09 2.31 -67.44 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 1.15 Total: 5.94 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 5.09 Total: -24.99 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -3.63 Total: -83.93 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -1.08 Total: -17.46 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 9.71 SS G_CDS: -1.24 Total: 8.48 kcal Total: -69.75 2.31 -67.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005788716.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.642 kcal (2) G-P(sol) polarization free energy of solvation -69.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds