Wall clock time and date at job start Tue Mar 31 2020 02:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00127 * 2 1 4 4 H 1.48498 * 109.46832 * 269.99782 * 3 2 1 5 5 H 1.48504 * 109.46859 * 29.99599 * 3 2 1 6 6 H 1.48498 * 109.46950 * 149.99582 * 3 2 1 7 7 C 1.37873 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00320 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99798 * 0.02562 * 7 2 1 10 10 N 1.46508 * 109.47193 * 179.97438 * 9 7 2 11 11 S 1.65595 * 119.99876 * 165.00215 * 10 9 7 12 12 O 1.42105 * 106.40149 * 178.54167 * 11 10 9 13 13 O 1.42098 * 106.40317 * 311.46040 * 11 10 9 14 14 N 1.65606 * 107.22013 * 65.00349 * 11 10 9 15 15 C 1.46923 * 120.62553 * 269.71749 * 14 11 10 16 16 C 1.52760 * 109.00861 * 233.58205 * 15 14 11 17 17 C 1.53046 * 109.38256 * 305.58983 * 16 15 14 18 18 C 1.50698 * 109.44804 * 181.25321 * 17 16 15 19 19 O 1.20832 * 119.99825 * 239.94312 * 18 17 16 20 20 O 1.34224 * 120.00415 * 59.93871 * 18 17 16 21 21 C 1.53042 * 109.53591 * 61.23964 * 17 16 15 22 22 C 1.46921 * 120.63289 * 89.99671 * 14 11 10 23 23 H 0.97005 * 120.00292 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47277 * 60.00300 * 9 7 2 25 25 H 1.08993 * 109.47815 * 300.00096 * 9 7 2 26 26 H 0.96997 * 120.00091 * 345.00187 * 10 9 7 27 27 H 1.09001 * 109.59343 * 353.42265 * 15 14 11 28 28 H 1.09010 * 109.58634 * 113.84364 * 15 14 11 29 29 H 1.09006 * 109.56563 * 185.55777 * 16 15 14 30 30 H 1.09001 * 109.35973 * 65.50306 * 16 15 14 31 31 H 1.08998 * 109.46354 * 301.21868 * 17 16 15 32 32 H 0.96700 * 117.00521 * 179.97438 * 20 18 17 33 33 H 1.08998 * 109.49686 * 178.67995 * 21 17 16 34 34 H 1.09001 * 109.49965 * 58.58641 * 21 17 16 35 35 H 1.08997 * 109.58689 * 246.15965 * 22 14 11 36 36 H 1.08998 * 109.58450 * 6.44081 * 22 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 16 1.6881 -5.1422 0.3717 12 8 2.8237 -5.9880 0.2517 13 8 0.9250 -5.0301 1.5651 14 7 0.6321 -5.6058 -0.8168 15 6 -0.8063 -5.3364 -0.6868 16 6 -1.5762 -6.6424 -0.8746 17 6 -1.1739 -7.2823 -2.2054 18 6 -1.9551 -8.5551 -2.4065 19 8 -1.3744 -9.6082 -2.5244 20 8 -3.2960 -8.5192 -2.4547 21 6 0.3231 -7.6000 -2.1886 22 6 1.1151 -6.2999 -2.0183 23 1 -0.4851 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8902 26 1 3.1349 -3.4541 -0.2169 27 1 -1.0141 -4.9304 0.3032 28 1 -1.1145 -4.6209 -1.4493 29 1 -2.6468 -6.4377 -0.8783 30 1 -1.3382 -7.3229 -0.0570 31 1 -1.3894 -6.5913 -3.0204 32 1 -3.7534 -9.3610 -2.5858 33 1 0.6042 -8.0770 -3.1275 34 1 0.5432 -8.2715 -1.3587 35 1 0.9669 -5.6647 -2.8916 36 1 2.1753 -6.5273 -1.9076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054156460.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:06 Heat of formation + Delta-G solvation = -208.692603 kcal Electronic energy + Delta-G solvation = -22166.139833 eV Core-core repulsion = 18582.286133 eV Total energy + Delta-G solvation = -3583.853700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.097 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.50662 -39.14712 -38.36084 -37.09037 -36.92668 -36.42533 -34.09948 -33.78291 -32.13192 -28.69377 -26.96084 -24.59500 -24.29505 -23.08963 -21.31183 -20.35300 -19.14511 -19.03857 -18.82876 -17.79736 -17.51552 -17.28980 -16.63604 -16.59143 -15.78487 -15.44599 -15.18500 -14.80886 -14.71885 -14.52057 -14.32984 -14.05085 -13.63544 -13.56462 -13.41106 -13.19048 -13.01956 -12.75037 -12.58825 -12.53828 -12.47657 -12.21194 -12.08866 -11.76090 -11.68090 -11.42238 -11.39292 -10.83243 -10.14100 -10.02592 -8.23390 -6.34761 -0.34784 1.19843 1.45665 1.47033 1.57380 1.96996 2.14527 2.42362 2.59911 3.11697 3.36497 3.57900 3.65806 3.92640 4.06299 4.12878 4.36685 4.43071 4.61528 4.68146 4.72513 4.79325 4.80287 4.90782 5.08149 5.17062 5.25700 5.31565 5.36994 5.61077 5.64214 5.76964 6.03458 6.33729 6.79250 7.01559 7.34925 8.87339 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024520 B = 0.004200 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.644428 B = 6665.726696 C = 7268.061696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.552 4.552 8 H 0.069 0.931 9 C 0.263 3.737 10 N -1.115 6.115 11 S 2.800 3.200 12 O -1.008 7.008 13 O -1.015 7.015 14 N -1.005 6.005 15 C 0.115 3.885 16 C -0.115 4.115 17 C -0.077 4.077 18 C 0.492 3.508 19 O -0.551 6.551 20 O -0.509 6.509 21 C -0.113 4.113 22 C 0.117 3.883 23 H 0.269 0.731 24 H 0.020 0.980 25 H 0.006 0.994 26 H 0.414 0.586 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.139 0.861 32 H 0.427 0.573 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.062 -13.002 -8.011 16.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.793 3.207 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.592 4.592 8 H 0.088 0.912 9 C 0.138 3.862 10 N -0.877 5.877 11 S 2.809 3.191 12 O -0.992 6.992 13 O -0.999 6.999 14 N -0.846 5.846 15 C -0.010 4.010 16 C -0.155 4.155 17 C -0.096 4.096 18 C 0.336 3.664 19 O -0.441 6.441 20 O -0.322 6.322 21 C -0.152 4.152 22 C -0.008 4.008 23 H 0.078 0.922 24 H 0.038 0.962 25 H 0.024 0.976 26 H 0.248 0.752 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.129 0.871 30 H 0.081 0.919 31 H 0.156 0.844 32 H 0.288 0.712 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.805 -13.343 -7.158 15.886 hybrid contribution 0.267 0.529 -0.198 0.625 sum -4.539 -12.814 -7.356 15.457 Atomic orbital electron populations 1.70028 1.07441 1.28349 1.50304 1.25808 0.95808 1.02915 0.94278 0.85397 0.78456 0.78286 0.78552 1.19467 1.20869 1.19251 1.21635 0.94011 0.91270 1.52239 0.91241 1.18610 0.87866 0.84203 0.95476 1.55692 1.19521 1.24762 1.87729 1.01091 0.72267 0.72392 0.73358 1.93526 1.51665 1.66549 1.87429 1.93529 1.72878 1.87270 1.46216 1.57942 1.18247 1.72102 1.36349 1.21496 0.78103 0.97727 1.03707 1.21772 1.02077 0.96333 0.95282 1.21074 0.94040 0.92642 1.01837 1.23589 0.81166 0.91074 0.70581 1.90717 1.71550 1.34212 1.47651 1.84510 1.20325 1.43570 1.83798 1.21763 0.92239 0.97096 1.04092 1.21638 0.99083 0.92888 0.87156 0.92243 0.96214 0.97583 0.75225 0.90065 0.89143 0.87121 0.91930 0.84384 0.71166 0.88313 0.92205 0.88563 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.35 13.29 21.45 0.28 -51.07 16 2 C 0.01 0.65 5.46 84.65 0.46 1.11 16 3 Si 0.97 41.43 29.54 68.60 2.03 43.45 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.55 -29.02 9.27 25.60 0.24 -28.78 16 8 H 0.07 3.49 7.65 -2.91 -0.02 3.46 16 9 C 0.26 12.73 6.00 85.63 0.51 13.24 16 10 N -1.11 -44.33 6.05 -190.77 -1.15 -45.48 16 11 S 2.80 102.72 6.18 -56.49 -0.35 102.37 16 12 O -1.01 -38.70 16.73 -128.00 -2.14 -40.84 16 13 O -1.02 -44.34 16.19 -128.00 -2.07 -46.41 16 14 N -1.00 -28.40 3.35 -513.86 -1.72 -30.12 16 15 C 0.11 2.91 6.45 86.22 0.56 3.47 16 16 C -0.12 -2.27 5.28 30.53 0.16 -2.11 16 17 C -0.08 -1.34 2.59 -11.51 -0.03 -1.37 16 18 C 0.49 9.19 7.63 71.24 0.54 9.74 16 19 O -0.55 -13.89 16.74 21.95 0.37 -13.53 16 20 O -0.51 -6.71 13.30 -51.36 -0.68 -7.39 16 21 C -0.11 -2.24 4.65 30.67 0.14 -2.10 16 22 C 0.12 2.57 6.48 86.36 0.56 3.13 16 23 H 0.27 14.06 8.31 -92.70 -0.77 13.29 16 24 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.01 0.34 7.75 -2.39 -0.02 0.32 16 26 H 0.41 15.16 8.54 -96.75 -0.83 14.34 16 27 H 0.08 2.43 6.91 -2.39 -0.02 2.41 16 28 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.11 1.74 8.08 -2.38 -0.02 1.72 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.43 2.17 9.10 -74.06 -0.67 1.50 16 33 H 0.10 1.69 8.07 -2.39 -0.02 1.67 16 34 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 35 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.09 2.15 6.92 -2.39 -0.02 2.14 16 Total: -1.00 -72.08 316.66 -2.68 -74.76 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -0.38 Total: 17.93 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 3.15 Total: -3.67 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -2.59 Total: -126.67 kcal Atomic # 8 Polarization: -103.64 SS G_CDS: -4.53 Total: -108.17 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 16 Polarization: 102.72 SS G_CDS: -0.35 Total: 102.37 kcal Total: -72.08 -2.68 -74.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054156460.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.932 kcal (2) G-P(sol) polarization free energy of solvation -72.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds