Wall clock time and date at job start Tue Mar 31 2020 02:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35725 * 116.99836 * 2 1 4 4 C 1.38911 * 119.61535 * 179.97438 * 3 2 1 5 5 C 1.38315 * 119.18217 * 180.02562 * 4 3 2 6 6 C 1.39337 * 118.42889 * 0.02562 * 5 4 3 7 7 N 1.40417 * 120.42148 * 179.97438 * 6 5 4 8 8 C 1.36938 * 127.17116 * 310.00303 * 7 6 5 9 9 N 1.30327 * 107.29643 * 179.97438 * 8 7 6 10 10 N 1.28511 * 110.13452 * 359.74531 * 9 8 7 11 11 C 1.31304 * 109.90783 * 0.41688 * 10 9 8 12 12 S 1.76199 * 126.49794 * 179.85667 * 11 10 9 13 13 C 1.81002 * 100.00182 * 359.69192 * 12 11 10 14 14 C 1.50703 * 109.47349 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99861 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00031 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00069 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00035 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47281 * 90.00245 * 18 16 14 20 20 H 1.48498 * 109.47422 * 210.00283 * 18 16 14 21 21 H 1.48502 * 109.47350 * 330.00080 * 18 16 14 22 22 C 1.38615 * 119.16554 * 0.27065 * 6 5 4 23 23 N 1.31942 * 120.74108 * 359.40985 * 22 6 5 24 24 H 1.08999 * 109.46989 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47195 * 299.99586 * 1 2 3 26 26 H 1.09001 * 109.47436 * 60.00087 * 1 2 3 27 27 H 1.08007 * 120.41087 * 0.02562 * 4 3 2 28 28 H 1.07996 * 120.78826 * 179.97438 * 5 4 3 29 29 H 1.08001 * 126.34896 * 359.97438 * 8 7 6 30 30 H 1.09005 * 109.46889 * 299.99975 * 13 12 11 31 31 H 1.09000 * 109.47231 * 59.99947 * 13 12 11 32 32 H 0.97004 * 120.00055 * 180.02562 * 17 16 14 33 33 H 1.07995 * 119.63407 * 179.70522 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4328 1.2728 0.0005 5 6 4.0514 2.5099 0.0011 6 6 3.2521 3.6512 0.0016 7 7 3.8360 4.9282 0.0027 8 6 4.8177 5.3884 0.8392 9 7 5.0688 6.6215 0.5004 10 7 4.3243 6.9692 -0.4877 11 6 3.5434 5.9714 -0.8319 12 16 2.3499 5.9735 -2.1281 13 6 2.5558 7.6636 -2.7422 14 6 1.6068 7.9007 -3.8887 15 1 0.9459 7.1112 -4.2147 16 6 1.5829 9.1251 -4.5219 17 7 0.7551 9.3318 -5.5227 18 14 2.7265 10.4905 -3.9585 19 1 4.0053 10.4062 -4.7085 20 1 2.0889 11.8071 -4.2136 21 1 2.9944 10.3437 -2.5052 22 6 1.8731 3.5101 0.0073 23 7 1.3176 2.3134 0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 4.0215 0.3672 0.0005 28 1 5.1284 2.5894 0.0019 29 1 5.2952 4.8325 1.6325 30 1 2.3404 8.3702 -1.9406 31 1 3.5813 7.8036 -3.0841 32 1 0.7386 10.1932 -5.9685 33 1 1.2464 4.3896 0.0126 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069599521.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:51 Heat of formation + Delta-G solvation = 87.184489 kcal Electronic energy + Delta-G solvation = -19859.260258 eV Core-core repulsion = 16627.838423 eV Total energy + Delta-G solvation = -3231.421835 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.88207 -40.95158 -38.40553 -35.00575 -33.13642 -32.79036 -30.61307 -29.98359 -29.39093 -27.54925 -24.55682 -24.02948 -22.93394 -22.07303 -21.68358 -18.96508 -18.71626 -17.60017 -16.98370 -16.40556 -16.27659 -15.76028 -15.30320 -14.95855 -14.59191 -14.23802 -14.01016 -13.82075 -13.58222 -13.29225 -12.83862 -12.46693 -12.21145 -11.78689 -11.56694 -11.02401 -10.95316 -10.83243 -10.53977 -10.38221 -10.19887 -10.02633 -9.84509 -9.81656 -9.37618 -8.75571 -8.73040 -7.13375 -6.25041 -4.30734 0.49268 0.71167 1.55891 1.81718 2.48611 2.75410 2.96740 3.09661 3.26090 3.28383 3.35819 3.42205 3.90217 4.29258 4.31074 4.46920 4.49074 4.65723 4.97136 5.04470 5.08256 5.14155 5.21814 5.34330 5.39998 5.42173 5.68617 5.85401 6.04664 6.62266 6.65539 6.70187 6.90678 7.30185 7.37261 8.16894 8.70597 8.75844 9.30084 10.85870 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.019722 B = 0.004293 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.372456 B = 6521.424993 C = 7733.070090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.304 6.304 3 C 0.327 3.673 4 C -0.175 4.175 5 C -0.030 4.030 6 C 0.031 3.969 7 N -0.423 5.423 8 C 0.147 3.853 9 N -0.283 5.283 10 N -0.293 5.293 11 C 0.178 3.822 12 S -0.009 6.009 13 C 0.032 3.968 14 C -0.528 4.528 15 H 0.084 0.916 16 C 0.088 3.912 17 N -0.887 5.887 18 Si 0.874 3.126 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.257 1.257 22 C 0.169 3.831 23 N -0.518 5.518 24 H 0.098 0.902 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.153 0.847 28 H 0.151 0.849 29 H 0.219 0.781 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.270 0.730 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.687 -18.553 13.563 23.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.210 6.210 3 C 0.148 3.852 4 C -0.196 4.196 5 C -0.057 4.057 6 C -0.063 4.063 7 N -0.116 5.116 8 C -0.142 4.142 9 N -0.121 5.121 10 N -0.136 5.136 11 C -0.194 4.194 12 S 0.221 5.779 13 C -0.116 4.116 14 C -0.567 4.567 15 H 0.102 0.898 16 C -0.118 4.118 17 N -0.523 5.523 18 Si 0.700 3.300 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.181 1.181 22 C 0.011 3.989 23 N -0.241 5.241 24 H 0.116 0.884 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.171 0.829 28 H 0.169 0.831 29 H 0.236 0.764 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.739 -18.197 13.057 22.564 hybrid contribution 1.522 0.629 0.644 1.769 sum 4.261 -17.568 13.701 22.683 Atomic orbital electron populations 1.22959 0.76583 1.03264 1.03031 1.86255 1.23466 1.24003 1.87318 1.19991 0.89481 0.84947 0.90797 1.20949 0.91971 0.98916 1.07731 1.21335 1.00852 0.89812 0.93719 1.18447 0.93542 0.83280 1.11055 1.43900 1.31234 1.09668 1.26805 1.26682 0.93859 0.94349 0.99317 1.73946 1.19471 1.09679 1.08957 1.74827 1.06731 1.22060 1.09993 1.27914 1.04705 0.86518 1.00310 1.85742 1.38636 1.25576 1.27961 1.21731 1.01765 0.87668 1.00462 1.20348 1.21513 1.00610 1.14224 0.89794 1.24757 0.95102 0.97839 0.94066 1.69851 1.36371 1.24516 1.21597 0.86838 0.81167 0.81365 0.80672 1.19649 1.20740 1.18128 1.22541 0.90844 0.94750 0.90757 1.67491 1.39780 0.97996 1.18872 0.88368 0.91990 0.91714 0.82924 0.83107 0.76445 0.92790 0.93316 0.91991 0.81007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.38 101.05 1.05 1.33 16 2 O -0.30 -2.99 10.48 -18.88 -0.20 -3.19 16 3 C 0.33 3.52 7.49 -17.13 -0.13 3.40 16 4 C -0.17 -1.53 10.03 -39.30 -0.39 -1.92 16 5 C -0.03 -0.28 9.87 -39.14 -0.39 -0.67 16 6 C 0.03 0.39 5.94 -83.37 -0.50 -0.11 16 7 N -0.42 -6.25 2.93 -61.74 -0.18 -6.43 16 8 C 0.15 2.00 12.55 -88.76 -1.11 0.89 16 9 N -0.28 -5.15 12.17 29.94 0.36 -4.78 16 10 N -0.29 -6.12 11.60 30.72 0.36 -5.76 16 11 C 0.18 3.35 7.92 -88.12 -0.70 2.65 16 12 S -0.01 -0.18 20.86 -107.50 -2.24 -2.43 16 13 C 0.03 0.78 4.06 36.01 0.15 0.92 16 14 C -0.53 -14.57 9.68 -34.44 -0.33 -14.91 16 15 H 0.08 2.48 7.95 -52.49 -0.42 2.06 16 16 C 0.09 2.49 5.47 -17.82 -0.10 2.39 16 17 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 18 Si 0.87 21.25 27.47 -169.99 -4.67 16.59 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 22 C 0.17 2.16 10.16 -17.37 -0.18 1.98 16 23 N -0.52 -6.33 9.20 -13.19 -0.12 -6.45 16 24 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 26 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 27 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 28 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.22 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.05 1.33 7.20 -51.91 -0.37 0.96 16 31 H 0.05 1.20 7.57 -51.92 -0.39 0.80 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.17 2.26 7.68 -52.49 -0.40 1.86 16 LS Contribution 310.22 15.07 4.68 4.68 Total: -1.00 -32.92 310.22 -7.16 -40.08 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -3.29 Total: -2.78 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -2.63 Total: -4.05 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 1.19 Total: -48.89 kcal Atomic # 8 Polarization: -2.99 SS G_CDS: -0.20 Total: -3.19 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.59 kcal Atomic # 16 Polarization: -0.18 SS G_CDS: -2.24 Total: -2.43 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.92 -7.16 -40.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069599521.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.267 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds