Wall clock time and date at job start Tue Mar 31 2020 02:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00351 * 2 1 4 4 H 1.48500 * 109.47350 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46893 * 299.99819 * 3 2 1 6 6 H 1.48493 * 109.47057 * 59.99878 * 3 2 1 7 7 C 1.38954 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00345 * 179.72415 * 7 2 1 9 9 N 1.37105 * 119.99815 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99904 * 179.72596 * 9 7 2 11 11 O 1.21288 * 119.99985 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99735 * 179.97438 * 10 9 7 13 13 C 1.52998 * 109.46973 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.61166 * 304.65782 * 13 12 10 15 15 S 1.81811 * 109.61043 * 65.00088 * 13 12 10 16 16 C 1.76532 * 101.76323 * 74.48678 * 15 13 12 17 17 C 1.38590 * 120.00091 * 209.93565 * 16 15 13 18 18 C 1.38249 * 119.92509 * 180.19753 * 17 16 15 19 19 C 1.38300 * 119.89934 * 0.12005 * 18 17 16 20 20 C 1.38064 * 120.42450 * 359.83893 * 19 18 17 21 21 C 1.39166 * 120.29089 * 359.93399 * 20 19 18 22 22 N 1.39218 * 119.09724 * 180.57800 * 21 20 19 23 23 C 1.32979 * 126.17565 * 162.33612 * 22 21 20 24 24 O 1.21305 * 118.49853 * 174.43654 * 23 22 21 25 25 H 0.97000 * 119.99308 * 0.02562 * 1 2 3 26 26 H 0.97005 * 119.99906 * 359.71935 * 9 7 2 27 27 H 1.09000 * 109.47333 * 299.99429 * 12 10 9 28 28 H 1.09002 * 109.47152 * 59.99956 * 12 10 9 29 29 H 1.07998 * 120.03468 * 0.24140 * 17 16 15 30 30 H 1.08008 * 120.04846 * 180.14657 * 18 17 16 31 31 H 1.08002 * 119.79093 * 179.80694 * 19 18 17 32 32 H 1.07995 * 119.85603 * 179.97438 * 20 19 18 33 33 H 0.96999 * 116.91851 * 342.33805 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8895 2.3964 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2035 -0.0040 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 -0.0045 11 8 3.2100 -3.5579 -0.0095 12 6 1.2436 -4.8629 -0.0039 13 6 2.2378 -6.0259 -0.0110 14 1 2.9155 -5.9227 -0.8584 15 16 3.1914 -6.0228 1.5369 16 6 2.0037 -6.6311 2.6926 17 6 2.0603 -6.2329 4.0189 18 6 1.1319 -6.7135 4.9235 19 6 0.1505 -7.5925 4.5028 20 6 0.0888 -7.9919 3.1827 21 6 1.0140 -7.5124 2.2603 22 7 0.9214 -7.9221 0.9330 23 6 1.4901 -7.3295 -0.1129 24 8 1.4024 -7.8630 -1.1988 25 1 -0.4849 0.8401 -0.0004 26 1 0.3533 -2.3907 0.0043 27 1 0.6207 -4.9225 0.8886 28 1 0.6132 -4.9189 -0.8914 29 1 2.8284 -5.5474 4.3452 30 1 1.1727 -6.4027 5.9571 31 1 -0.5721 -7.9693 5.2116 32 1 -0.6812 -8.6790 2.8642 33 1 0.3918 -8.7148 0.7540 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071850345.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:18 Heat of formation + Delta-G solvation = -62.215518 kcal Electronic energy + Delta-G solvation = -20474.941868 eV Core-core repulsion = 17204.748811 eV Total energy + Delta-G solvation = -3270.193057 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.95679 -40.21134 -39.80154 -36.42171 -36.08458 -34.16250 -33.21495 -32.01609 -30.60023 -28.17136 -26.06961 -24.33256 -23.84507 -21.52768 -21.10526 -19.93890 -19.31758 -18.87171 -18.27231 -17.69546 -16.96240 -16.43670 -16.39683 -15.94059 -15.71818 -15.57337 -15.50650 -14.82136 -14.51920 -14.38632 -14.07479 -13.90999 -13.50303 -13.09821 -12.87225 -12.59074 -12.40336 -12.27877 -12.12381 -11.97658 -11.87217 -11.52154 -11.17930 -10.64568 -10.28507 -10.02513 -9.35786 -8.49187 -8.45698 -5.95722 -0.19486 0.21548 0.43001 1.09739 1.32620 1.36816 1.42927 1.56976 1.72933 2.00212 2.29444 2.70591 2.79707 3.19043 3.21700 3.44941 3.67925 3.87220 4.08882 4.29846 4.36823 4.38618 4.41922 4.47284 4.52287 4.88978 4.97195 5.32175 5.42092 5.42954 5.51999 5.74433 5.97262 5.99842 6.55569 6.59044 7.10368 7.51260 8.05017 8.70505 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.018937 B = 0.004691 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.193561 B = 5967.331435 C = 6580.483395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.330 4.330 8 H 0.083 0.917 9 N -0.568 5.568 10 C 0.449 3.551 11 O -0.608 6.608 12 C -0.108 4.108 13 C -0.071 4.071 14 H 0.138 0.862 15 S -0.091 6.091 16 C -0.154 4.154 17 C -0.076 4.076 18 C -0.121 4.121 19 C -0.080 4.080 20 C -0.132 4.132 21 C 0.137 3.863 22 N -0.637 5.637 23 C 0.539 3.461 24 O -0.543 6.543 25 H 0.278 0.722 26 H 0.395 0.605 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.130 0.870 30 H 0.159 0.841 31 H 0.169 0.831 32 H 0.164 0.836 33 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.450 -15.806 10.658 19.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.459 4.459 8 H 0.100 0.900 9 N -0.205 5.205 10 C 0.235 3.765 11 O -0.494 6.494 12 C -0.150 4.150 13 C -0.203 4.203 14 H 0.156 0.844 15 S 0.153 5.847 16 C -0.269 4.269 17 C -0.100 4.100 18 C -0.142 4.142 19 C -0.100 4.100 20 C -0.154 4.154 21 C 0.036 3.964 22 N -0.281 5.281 23 C 0.324 3.676 24 O -0.421 6.421 25 H 0.087 0.913 26 H 0.229 0.771 27 H 0.116 0.884 28 H 0.129 0.871 29 H 0.148 0.852 30 H 0.176 0.824 31 H 0.187 0.813 32 H 0.181 0.819 33 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -2.461 -15.363 10.099 18.549 hybrid contribution -1.295 0.394 -0.649 1.501 sum -3.756 -14.969 9.450 18.096 Atomic orbital electron populations 1.69683 1.06896 1.29264 1.50347 1.26039 0.96500 1.02410 0.96220 0.84871 0.78104 0.77095 0.78290 1.19690 1.19750 1.19537 1.19727 0.92791 0.83697 1.49677 0.89951 1.41864 1.09245 1.04601 1.64765 1.20112 0.88080 0.85410 0.82872 1.90518 1.15006 1.87508 1.56351 1.21500 0.97373 0.90629 1.05496 1.23325 1.00651 0.94295 1.02000 0.84441 1.86496 1.16803 1.81342 1.00092 1.21738 1.01569 1.04605 0.99006 1.20999 0.99714 0.98688 0.90572 1.21524 0.94403 0.97629 1.00598 1.21468 0.97950 0.95397 0.95159 1.21254 0.98176 1.02819 0.93104 1.17760 0.97253 0.97647 0.83760 1.42757 1.50357 1.30661 1.04300 1.19599 0.78037 0.86116 0.83895 1.90793 1.59766 1.64632 1.26883 0.91289 0.77111 0.88355 0.87082 0.85174 0.82367 0.81326 0.81893 0.73501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.57 13.05 21.66 0.28 -49.28 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 3 Si 0.99 42.76 29.55 68.60 2.03 44.79 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.33 -18.58 9.68 84.04 0.81 -17.76 16 8 H 0.08 4.94 7.16 -2.92 -0.02 4.92 16 9 N -0.57 -29.16 5.29 -306.99 -1.62 -30.79 16 10 C 0.45 21.27 7.50 87.66 0.66 21.93 16 11 O -0.61 -32.69 14.38 -3.05 -0.04 -32.73 16 12 C -0.11 -3.89 5.14 29.85 0.15 -3.73 16 13 C -0.07 -2.47 2.42 29.82 0.07 -2.39 16 14 H 0.14 5.23 7.96 -2.39 -0.02 5.21 16 15 S -0.09 -3.17 20.11 -56.49 -1.14 -4.31 16 16 C -0.15 -4.24 5.74 22.63 0.13 -4.11 16 17 C -0.08 -1.80 9.78 22.36 0.22 -1.58 16 18 C -0.12 -1.93 10.06 22.29 0.22 -1.71 16 19 C -0.08 -1.00 10.02 22.24 0.22 -0.77 16 20 C -0.13 -1.95 9.79 22.45 0.22 -1.73 16 21 C 0.14 3.07 6.58 38.47 0.25 3.32 16 22 N -0.64 -14.77 5.08 -305.72 -1.55 -16.32 16 23 C 0.54 16.48 6.85 87.91 0.60 17.08 16 24 O -0.54 -19.11 17.78 -3.11 -0.06 -19.17 16 25 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 26 H 0.40 19.42 7.90 -92.70 -0.73 18.69 16 27 H 0.10 3.27 7.91 -2.39 -0.02 3.25 16 28 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 29 H 0.13 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 31 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 32 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 33 H 0.43 7.31 8.54 -92.71 -0.79 6.51 16 Total: -1.00 -70.96 303.77 1.59 -69.37 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: -0.35 Total: 30.07 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 4.03 Total: 8.37 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -2.89 Total: -96.39 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -0.10 Total: -51.90 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: -3.17 SS G_CDS: -1.14 Total: -4.31 kcal Total: -70.96 1.59 -69.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071850345.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.159 kcal (2) G-P(sol) polarization free energy of solvation -70.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds