Wall clock time and date at job start Tue Mar 31 2020 02:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86802 * 119.99691 * 2 1 4 4 H 1.48508 * 109.46978 * 269.99949 * 3 2 1 5 5 H 1.48495 * 109.47271 * 29.99596 * 3 2 1 6 6 H 1.48499 * 109.46966 * 150.00333 * 3 2 1 7 7 C 1.38949 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99966 * 359.97438 * 7 2 1 9 9 N 1.37101 * 119.99586 * 180.02562 * 7 2 1 10 10 C 1.34778 * 119.99491 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00432 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99967 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.46925 * 179.97438 * 12 10 9 14 14 C 1.34786 * 119.99746 * 179.97438 * 13 12 10 15 15 O 1.21588 * 119.99987 * 359.73114 * 14 13 12 16 16 C 1.47546 * 119.99972 * 180.02562 * 14 13 12 17 17 C 1.39809 * 120.15528 * 359.72702 * 16 14 13 18 18 C 1.37751 * 119.97921 * 179.97438 * 17 16 14 19 19 C 1.38533 * 120.35795 * 0.02749 * 18 17 16 20 20 C 1.38434 * 120.37085 * 359.97194 * 19 18 17 21 21 C 1.39282 * 119.92143 * 359.74598 * 20 19 18 22 22 O 1.36210 * 108.71937 * 179.82059 * 21 20 19 23 23 C 1.43978 * 105.58601 * 343.08942 * 22 21 20 24 24 O 1.36546 * 131.49689 * 179.97438 * 20 19 18 25 25 H 0.97003 * 119.99728 * 0.02562 * 1 2 3 26 26 H 0.96990 * 120.00582 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.46546 * 59.99627 * 12 10 9 28 28 H 1.08993 * 109.47092 * 299.99779 * 12 10 9 29 29 H 0.96995 * 120.00702 * 0.02562 * 13 12 10 30 30 H 1.08000 * 120.00933 * 359.95267 * 17 16 14 31 31 H 1.08000 * 119.81969 * 180.02562 * 18 17 16 32 32 H 1.07994 * 119.81359 * 179.97438 * 19 18 17 33 33 H 1.09006 * 110.57216 * 268.33157 * 23 22 21 34 34 H 1.08994 * 110.70627 * 145.51414 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4002 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0014 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3704 0.0011 11 8 3.4475 -3.4209 0.0011 12 6 5.5609 -2.3704 0.0011 13 7 6.0492 -3.7516 0.0017 14 6 7.3743 -3.9978 0.0013 15 8 8.1644 -3.0736 -0.0046 16 6 7.8662 -5.3889 0.0013 17 6 6.9606 -6.4540 0.0076 18 6 7.4237 -7.7513 0.0071 19 6 8.7849 -8.0088 0.0010 20 6 9.6946 -6.9653 -0.0053 21 6 9.2412 -5.6483 -0.0108 22 8 10.3186 -4.8150 -0.0122 23 6 11.4358 -5.6265 0.3958 24 8 11.0600 -6.9554 -0.0114 25 1 -0.4850 0.8401 -0.0004 26 1 3.8649 -0.3632 0.0007 27 1 5.9241 -1.8564 0.8911 28 1 5.9242 -1.8566 -0.8889 29 1 5.4189 -4.4889 0.0016 30 1 5.8982 -6.2597 0.0131 31 1 6.7219 -8.5722 0.0115 32 1 9.1384 -9.0292 0.0010 33 1 11.5680 -5.5805 1.4769 34 1 12.3466 -5.3127 -0.1140 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344189177.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:33 Heat of formation + Delta-G solvation = -120.553695 kcal Electronic energy + Delta-G solvation = -22196.093438 eV Core-core repulsion = 18480.617776 eV Total energy + Delta-G solvation = -3715.475661 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.27354 -41.15501 -40.07987 -38.53865 -37.31981 -36.31754 -35.41468 -33.84307 -32.27583 -31.04391 -29.38190 -26.82678 -26.48256 -24.77465 -23.86131 -21.77640 -21.50638 -20.63928 -19.46917 -19.09202 -18.47177 -17.95224 -17.45329 -17.07333 -16.83200 -16.73311 -16.45268 -15.72673 -15.53170 -15.42242 -15.16742 -14.87072 -14.63242 -14.28843 -14.06777 -14.02129 -13.92685 -13.52863 -13.17507 -12.97111 -12.73188 -12.44809 -12.00708 -11.94863 -11.58544 -11.17731 -10.67029 -10.38261 -10.30566 -9.96176 -9.18440 -8.45790 -6.07616 -0.38243 0.05577 1.30902 1.33855 1.43504 1.63070 1.75712 1.79932 1.86232 2.20182 2.43561 2.61205 2.83033 3.10531 3.30609 3.68671 3.75695 3.87070 3.98296 4.08309 4.15801 4.20890 4.35535 4.37605 4.43379 4.78182 4.90253 5.13804 5.15954 5.25063 5.39041 5.47981 5.87783 6.01001 6.38892 6.47848 6.77549 7.02553 7.28611 7.76340 8.70494 Molecular weight = 292.09amu Principal moments of inertia in cm(-1) A = 0.034848 B = 0.003093 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.291087 B = 9051.650593 C = 9827.875342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.957 3.043 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.234 1.234 7 C -0.331 4.331 8 H 0.066 0.934 9 N -0.577 5.577 10 C 0.447 3.553 11 O -0.611 6.611 12 C 0.117 3.883 13 N -0.702 5.702 14 C 0.557 3.443 15 O -0.568 6.568 16 C -0.142 4.142 17 C -0.076 4.076 18 C -0.102 4.102 19 C -0.064 4.064 20 C 0.007 3.993 21 C 0.071 3.929 22 O -0.315 6.315 23 C 0.200 3.800 24 O -0.315 6.315 25 H 0.281 0.719 26 H 0.392 0.608 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.415 0.585 30 H 0.155 0.845 31 H 0.185 0.815 32 H 0.173 0.827 33 H 0.104 0.896 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.853 -13.019 1.208 25.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.207 4.207 3 Si 0.777 3.223 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.157 1.157 7 C -0.460 4.460 8 H 0.084 0.916 9 N -0.217 5.217 10 C 0.234 3.766 11 O -0.497 6.497 12 C -0.011 4.011 13 N -0.357 5.357 14 C 0.345 3.655 15 O -0.448 6.448 16 C -0.146 4.146 17 C -0.095 4.095 18 C -0.120 4.120 19 C -0.083 4.083 20 C -0.037 4.037 21 C 0.024 3.976 22 O -0.230 6.230 23 C 0.089 3.911 24 O -0.232 6.232 25 H 0.091 0.909 26 H 0.228 0.772 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.255 0.745 30 H 0.173 0.827 31 H 0.202 0.798 32 H 0.190 0.810 33 H 0.122 0.878 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 21.977 -12.846 1.107 25.480 hybrid contribution -0.214 1.127 0.031 1.148 sum 21.763 -11.719 1.138 24.744 Atomic orbital electron populations 1.69777 1.07988 1.29452 1.49253 1.26037 0.96401 1.02505 0.95727 0.85469 0.79576 0.77199 0.80040 1.18152 1.19824 1.15694 1.19046 0.80866 0.95350 1.50699 0.91577 1.41923 1.06191 1.07400 1.66185 1.20387 0.89771 0.83978 0.82470 1.90518 1.70640 1.32155 1.56368 1.20919 0.89925 0.84931 1.05281 1.45565 1.06825 1.08987 1.74278 1.18339 0.81769 0.89163 0.76203 1.90784 1.55973 1.46551 1.51500 1.19028 0.89764 0.93634 1.12203 1.21505 0.99668 0.91767 0.96540 1.21339 0.94643 0.97023 0.98980 1.20755 0.90910 0.98595 0.98021 1.20039 0.83823 0.93698 1.06181 1.19951 0.88978 0.88646 1.00017 1.87465 1.16377 1.35164 1.83994 1.26192 0.90845 0.71942 1.02087 1.87350 1.16731 1.33646 1.85427 0.90906 0.77247 0.87709 0.87714 0.74496 0.82744 0.79758 0.80972 0.87835 0.82077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.96 13.96 21.66 0.30 -53.66 16 2 C -0.01 -0.35 5.50 84.93 0.47 0.11 16 3 Si 0.96 37.97 27.74 68.60 1.90 39.87 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 6 H -0.23 -7.94 6.52 99.48 0.65 -7.29 16 7 C -0.33 -18.57 10.16 84.04 0.85 -17.71 16 8 H 0.07 4.37 7.39 -2.91 -0.02 4.34 16 9 N -0.58 -26.31 5.09 -306.97 -1.56 -27.87 16 10 C 0.45 19.24 7.85 87.66 0.69 19.93 16 11 O -0.61 -30.66 15.24 -3.07 -0.05 -30.71 16 12 C 0.12 3.89 6.15 85.63 0.53 4.42 16 13 N -0.70 -22.24 5.48 -469.99 -2.57 -24.81 16 14 C 0.56 18.20 7.76 86.70 0.67 18.87 16 15 O -0.57 -22.11 15.98 9.01 0.14 -21.97 16 16 C -0.14 -3.83 5.88 -20.03 -0.12 -3.95 16 17 C -0.08 -1.47 9.53 22.53 0.21 -1.26 16 18 C -0.10 -1.34 10.02 22.22 0.22 -1.12 16 19 C -0.06 -0.92 10.05 22.39 0.22 -0.69 16 20 C 0.01 0.15 7.14 22.57 0.16 0.31 16 21 C 0.07 1.90 6.79 22.93 0.16 2.05 16 22 O -0.31 -8.73 10.57 -67.65 -0.71 -9.45 16 23 C 0.20 3.38 8.89 113.37 1.01 4.39 16 24 O -0.31 -6.26 11.41 -76.59 -0.87 -7.13 16 25 H 0.28 15.00 8.31 -92.71 -0.77 14.23 16 26 H 0.39 15.05 5.76 -92.72 -0.53 14.52 16 27 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 28 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 29 H 0.42 12.56 5.46 -92.71 -0.51 12.05 16 30 H 0.16 2.68 6.40 -2.91 -0.02 2.66 16 31 H 0.19 1.02 8.06 -2.91 -0.02 1.00 16 32 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 33 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.16 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -79.21 303.93 1.74 -77.47 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: 0.09 Total: 32.92 kcal Atomic # 6 Polarization: 20.26 SS G_CDS: 5.08 Total: 25.34 kcal Atomic # 7 Polarization: -102.51 SS G_CDS: -3.83 Total: -106.34 kcal Atomic # 8 Polarization: -67.77 SS G_CDS: -1.49 Total: -69.26 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 1.90 Total: 39.87 kcal Total: -79.21 1.74 -77.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344189177.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.084 kcal (2) G-P(sol) polarization free energy of solvation -79.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds