Wall clock time and date at job start Tue Mar 31 2020 02:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99908 * 2 1 4 4 H 1.48504 * 109.47110 * 269.99853 * 3 2 1 5 5 H 1.48494 * 109.46882 * 30.00311 * 3 2 1 6 6 H 1.48500 * 109.47118 * 149.99912 * 3 2 1 7 7 C 1.38801 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99947 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99981 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00175 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47321 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99883 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00238 * 180.02562 * 11 10 9 14 14 C 1.46495 * 119.99979 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47084 * 180.02562 * 14 13 11 16 16 N 1.30106 * 124.96035 * 275.00644 * 15 14 13 17 17 C 1.35672 * 109.50054 * 180.02562 * 16 15 14 18 18 C 1.39835 * 133.87736 * 180.02562 * 17 16 15 19 19 C 1.38166 * 118.15729 * 180.24593 * 18 17 16 20 20 C 1.38623 * 119.55382 * 359.50160 * 19 18 17 21 21 N 1.31681 * 121.35806 * 0.50681 * 20 19 18 22 22 C 1.32348 * 121.58194 * 359.75267 * 21 20 19 23 23 N 1.36120 * 124.95638 * 95.00249 * 15 14 13 24 24 H 0.96998 * 126.27652 * 0.03676 * 23 15 14 25 25 H 0.96998 * 120.00099 * 359.97438 * 1 2 3 26 26 H 1.09011 * 109.47027 * 60.00142 * 10 9 7 27 27 H 1.08994 * 109.47358 * 300.00359 * 10 9 7 28 28 H 0.97006 * 119.99654 * 0.02562 * 13 11 10 29 29 H 1.09007 * 109.47210 * 60.00682 * 14 13 11 30 30 H 1.08994 * 109.47454 * 300.00435 * 14 13 11 31 31 H 1.08002 * 120.91802 * 359.96379 * 18 17 16 32 32 H 1.07996 * 120.22261 * 179.74371 * 19 18 17 33 33 H 1.08004 * 119.31479 * 180.25909 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7913 -5.5023 0.0000 13 7 2.8443 -6.3431 0.0007 14 6 2.3305 -7.7150 0.0008 15 6 3.4850 -8.6837 0.0022 16 7 4.1168 -9.0920 -1.0593 17 6 5.0976 -9.9570 -0.6979 18 6 6.0598 -10.6826 -1.4072 19 6 6.9207 -11.4946 -0.6940 20 6 6.8145 -11.5580 0.6867 21 7 5.9014 -10.8665 1.3362 22 6 5.0485 -10.0775 0.7024 23 7 4.0189 -9.2591 1.1142 24 1 3.7272 -9.1199 2.0288 25 1 -0.4850 0.8400 0.0004 26 1 3.1245 -3.7313 0.8895 27 1 3.1245 -3.7313 -0.8904 28 1 3.8011 -6.1834 0.0012 29 1 1.7224 -7.8754 -0.8896 30 1 1.7215 -7.8749 0.8904 31 1 6.1251 -10.6138 -2.4830 32 1 7.6738 -12.0729 -1.2085 33 1 7.4922 -12.1907 1.2406 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348420011.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:58 Heat of formation + Delta-G solvation = 22.088923 kcal Electronic energy + Delta-G solvation = -19064.862100 eV Core-core repulsion = 15830.617509 eV Total energy + Delta-G solvation = -3234.244591 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.50021 -40.68093 -39.40710 -35.94592 -34.75341 -34.58096 -32.25984 -32.07186 -30.45213 -27.99449 -27.49346 -24.19556 -23.87437 -22.23283 -21.91762 -19.95511 -19.45003 -18.68000 -17.92146 -17.62075 -16.99088 -16.87337 -16.63092 -16.60128 -15.79928 -15.58816 -14.89357 -14.64905 -14.47451 -14.35002 -14.08322 -13.61089 -13.53426 -13.30704 -13.16304 -12.88938 -12.61556 -12.29283 -12.09279 -11.73823 -11.14041 -11.11611 -10.32608 -10.29726 -10.28080 -9.93231 -9.61545 -8.65726 -8.34494 -6.12006 -0.34884 0.24375 1.15534 1.35945 1.42076 1.42759 1.51659 1.54552 1.63056 2.26909 2.34018 2.74796 2.79011 2.99815 3.28998 3.31531 3.61363 3.82570 3.94045 4.03485 4.13606 4.26614 4.31874 4.49299 4.52031 4.67114 4.80619 5.07620 5.16025 5.18365 5.42642 5.62010 6.00509 6.20209 6.31341 6.53458 6.82843 7.07155 7.10290 8.74575 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.035265 B = 0.002521 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.802266 B =11105.426863 C =11487.290133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.145 6.145 10 C -0.131 4.131 11 C 0.544 3.456 12 O -0.554 6.554 13 N -0.711 5.711 14 C 0.206 3.794 15 C 0.284 3.716 16 N -0.489 5.489 17 C -0.031 4.031 18 C -0.029 4.029 19 C -0.168 4.168 20 C 0.142 3.858 21 N -0.510 5.510 22 C 0.224 3.776 23 N -0.569 5.569 24 H 0.440 0.560 25 H 0.271 0.729 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.414 0.586 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.157 0.843 32 H 0.186 0.814 33 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.907 -23.962 0.871 29.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.083 5.917 10 C -0.282 4.282 11 C 0.330 3.670 12 O -0.431 6.431 13 N -0.367 5.367 14 C 0.081 3.919 15 C 0.016 3.984 16 N -0.211 5.211 17 C -0.152 4.152 18 C -0.056 4.056 19 C -0.190 4.190 20 C -0.025 4.025 21 N -0.224 5.224 22 C -0.012 4.012 23 N -0.185 5.185 24 H 0.282 0.718 25 H 0.080 0.920 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.251 0.749 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.175 0.825 32 H 0.203 0.797 33 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 14.486 -24.004 0.917 28.052 hybrid contribution 1.805 1.249 0.362 2.225 sum 16.291 -22.755 1.279 28.015 Atomic orbital electron populations 1.70169 1.07903 1.28615 1.47972 1.26105 0.95968 1.03262 0.93782 0.84968 0.78198 0.76146 0.78761 1.19381 1.20294 1.18283 1.23204 0.95351 0.92081 1.58855 0.89973 1.85528 1.10142 0.99024 1.97052 1.23368 1.03782 0.94083 1.06967 1.19941 0.85994 0.86221 0.74830 1.90718 1.16921 1.85836 1.49630 1.45652 1.10542 1.04049 1.76456 1.19668 0.89247 0.76924 1.06054 1.23263 0.97122 0.97109 0.80913 1.70415 1.08388 1.13896 1.28369 1.20199 1.00017 1.02190 0.92759 1.21204 0.90659 0.92079 1.01671 1.22382 1.01096 1.00391 0.95150 1.23419 0.92624 0.93645 0.92834 1.66502 1.05466 1.08538 1.41873 1.19177 0.93485 0.96976 0.91535 1.42694 1.27297 1.37204 1.11269 0.71800 0.91977 0.87006 0.87248 0.74938 0.87846 0.87323 0.82508 0.79663 0.77986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.48 13.22 21.65 0.29 -55.19 16 2 C 0.01 0.78 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.37 29.55 68.60 2.03 45.40 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.55 -30.91 9.50 67.95 0.65 -30.27 16 8 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 9 S -0.14 -7.86 20.57 -56.49 -1.16 -9.03 16 10 C -0.13 -5.01 6.16 71.24 0.44 -4.57 16 11 C 0.54 18.85 7.85 87.66 0.69 19.54 16 12 O -0.55 -23.89 15.86 -3.02 -0.05 -23.93 16 13 N -0.71 -17.13 5.55 -466.80 -2.59 -19.72 16 14 C 0.21 4.29 6.30 85.63 0.54 4.83 16 15 C 0.28 5.86 7.45 137.90 1.03 6.89 16 16 N -0.49 -11.97 11.28 -179.81 -2.03 -14.00 16 17 C -0.03 -0.68 7.24 39.52 0.29 -0.40 16 18 C -0.03 -0.44 10.22 22.64 0.23 -0.20 16 19 C -0.17 -1.54 10.09 22.34 0.23 -1.31 16 20 C 0.14 1.61 11.16 84.81 0.95 2.56 16 21 N -0.51 -9.67 10.38 -192.74 -2.00 -11.67 16 22 C 0.22 4.76 8.46 133.85 1.13 5.89 16 23 N -0.57 -10.34 6.21 -183.87 -1.14 -11.48 16 24 H 0.44 5.74 8.96 -92.71 -0.83 4.91 16 25 H 0.27 15.35 8.31 -92.71 -0.77 14.57 16 26 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 27 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 28 H 0.41 8.25 8.46 -92.70 -0.78 7.46 16 29 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 30 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.19 0.15 8.06 -2.91 -0.02 0.13 16 33 H 0.20 0.64 8.06 -2.91 -0.02 0.62 16 Total: -1.00 -80.79 314.14 -0.47 -81.26 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -0.44 Total: 14.17 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 6.63 Total: 4.19 kcal Atomic # 7 Polarization: -104.58 SS G_CDS: -7.48 Total: -112.06 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.05 Total: -23.93 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -7.86 SS G_CDS: -1.16 Total: -9.03 kcal Total: -80.79 -0.47 -81.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348420011.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.347 kcal (2) G-P(sol) polarization free energy of solvation -80.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds