Wall clock time and date at job start Tue Mar 31 2020 02:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31916 * 119.89649 * 2 1 4 4 N 1.28272 * 122.68049 * 180.02562 * 3 2 1 5 5 C 1.32657 * 122.18816 * 0.02562 * 4 3 2 6 6 S 1.76199 * 120.28892 * 179.97438 * 5 4 3 7 7 C 1.81002 * 100.00182 * 0.02562 * 6 5 4 8 8 C 1.50703 * 109.47349 * 180.02562 * 7 6 5 9 9 O 1.21296 * 119.99728 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99768 * 180.02562 * 8 7 6 11 11 C 1.37096 * 119.99636 * 179.97438 * 10 8 7 12 12 H 1.08005 * 120.00406 * 359.97438 * 11 10 8 13 13 C 1.38955 * 120.00133 * 179.97438 * 11 10 8 14 14 N 1.31412 * 119.99633 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00085 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47377 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46882 * 120.00381 * 15 13 11 18 18 H 1.48500 * 109.46940 * 240.00230 * 15 13 11 19 19 C 1.40853 * 119.42276 * 0.25252 * 5 4 3 20 20 C 1.43200 * 121.19637 * 179.72210 * 19 5 4 21 21 N 4.80802 * 136.65440 * 180.28644 * 2 1 3 22 22 C 1.38454 * 119.90210 * 180.02562 * 2 1 3 23 23 C 1.50708 * 121.04798 * 359.97438 * 22 2 1 24 24 H 1.08994 * 109.47092 * 90.00148 * 1 2 3 25 25 H 1.09006 * 109.46727 * 209.99809 * 1 2 3 26 26 H 1.08997 * 109.47288 * 329.99260 * 1 2 3 27 27 H 1.09005 * 109.46889 * 299.99975 * 7 6 5 28 28 H 1.09000 * 109.47231 * 59.99947 * 7 6 5 29 29 H 0.96993 * 120.00373 * 359.97438 * 10 8 7 30 30 H 0.96995 * 119.99666 * 179.97438 * 14 13 11 31 31 H 1.08998 * 109.46798 * 89.99651 * 23 22 2 32 32 H 1.08996 * 109.46625 * 209.99741 * 23 22 2 33 33 H 1.08996 * 109.46760 * 330.00295 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1645 1.1436 0.0000 4 7 3.4457 1.2059 -0.0005 5 6 4.2060 0.1189 -0.0015 6 16 5.9621 0.2627 -0.0028 7 6 6.1299 2.0650 -0.0014 8 6 7.5912 2.4335 -0.0029 9 8 8.4361 1.5632 -0.0043 10 7 7.9591 3.7301 -0.0017 11 6 9.2885 4.0653 -0.0025 12 1 10.0409 3.2904 -0.0038 13 6 9.6679 5.4020 -0.0018 14 7 8.7525 6.3448 0.0002 15 14 11.4792 5.8588 -0.0022 16 1 12.3016 4.6223 -0.0040 17 1 11.7875 6.6595 -1.2143 18 1 11.7885 6.6577 1.2107 19 6 3.5973 -1.1513 -0.0075 20 6 4.3814 -2.3495 -0.0148 21 7 5.0035 -3.3002 -0.0165 22 6 2.1972 -1.2002 -0.0005 23 6 1.4654 -2.5177 -0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 5.6512 2.4751 -0.8907 28 1 5.6527 2.4736 0.8893 29 1 7.2835 4.4260 -0.0002 30 1 9.0174 7.2779 0.0011 31 1 1.2885 -2.8350 -1.0282 32 1 2.0673 -3.2675 0.5128 33 1 0.5112 -2.4032 0.5136 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358283211.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:36 Heat of formation + Delta-G solvation = 44.091549 kcal Electronic energy + Delta-G solvation = -19372.447434 eV Core-core repulsion = 16139.156948 eV Total energy + Delta-G solvation = -3233.290485 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.39282 -38.24856 -37.15986 -35.32053 -34.11571 -33.66337 -31.46224 -29.62105 -29.39075 -28.33610 -24.92346 -24.61082 -23.32654 -19.80067 -19.07854 -18.52920 -18.13238 -17.28910 -16.01635 -15.98591 -14.94202 -14.64709 -14.58433 -14.41879 -13.98994 -13.91513 -13.81036 -13.55278 -13.28214 -13.19743 -13.14857 -12.96695 -12.53486 -12.32473 -12.13718 -11.65599 -11.30579 -11.14606 -10.56984 -10.50458 -10.40241 -10.31445 -10.04348 -9.99159 -9.65334 -8.69448 -8.12302 -7.70339 -6.52496 -3.94336 -0.05071 0.42934 1.28648 2.08632 2.34974 2.58156 3.10132 3.22960 3.27906 3.29837 3.30311 3.69515 3.76828 4.01610 4.09433 4.18807 4.30446 4.76309 4.77994 4.86735 4.95987 5.12386 5.17581 5.26854 5.31607 5.39086 5.57915 5.58528 5.74685 5.84925 6.08801 7.08698 7.45976 7.90091 8.33462 8.42627 9.03287 9.36404 9.84836 10.64415 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.029407 B = 0.003306 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.910210 B = 8468.402502 C = 9394.558185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.049 3.951 3 N -0.202 5.202 4 N -0.243 5.243 5 C 0.071 3.929 6 S 0.069 5.931 7 C -0.133 4.133 8 C 0.447 3.553 9 O -0.585 6.585 10 N -0.545 5.545 11 C -0.304 4.304 12 H 0.107 0.893 13 C 0.026 3.974 14 N -0.894 5.894 15 Si 0.933 3.067 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.020 4.020 20 C 0.253 3.747 21 N -0.375 5.375 22 C -0.014 4.014 23 C -0.125 4.125 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.397 0.603 30 H 0.274 0.726 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.262 -11.833 -0.041 22.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.100 4.100 3 N -0.046 5.046 4 N -0.090 5.090 5 C -0.185 4.185 6 S 0.310 5.690 7 C -0.285 4.285 8 C 0.231 3.769 9 O -0.471 6.471 10 N -0.180 5.180 11 C -0.433 4.433 12 H 0.125 0.875 13 C -0.177 4.177 14 N -0.534 5.534 15 Si 0.759 3.241 16 H -0.191 1.191 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.041 4.041 20 C -0.064 4.064 21 N -0.051 5.051 22 C -0.029 4.029 23 C -0.181 4.181 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.230 0.770 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.743 -12.753 -0.043 21.047 hybrid contribution -0.657 0.772 -0.011 1.014 sum -17.400 -11.981 -0.054 21.126 Atomic orbital electron populations 1.20721 0.86859 1.04306 1.03844 1.22556 0.99153 0.88797 0.99528 1.72639 1.01825 1.24728 1.05388 1.73815 0.98861 1.23323 1.13038 1.25813 1.04488 0.91771 0.96444 1.86685 0.87602 1.08119 1.86583 1.23785 1.01730 0.94821 1.08158 1.18942 0.87404 0.84340 0.86228 1.90573 1.51705 1.47963 1.56870 1.41745 1.08847 1.04801 1.62576 1.19811 0.82796 0.92576 1.48161 0.87533 1.25330 1.00374 0.95232 0.96727 1.69624 1.33650 1.00826 1.49283 0.85752 0.81696 0.78790 0.77847 1.19067 1.20572 1.20567 1.16323 0.91582 0.87819 1.08388 1.24848 0.93877 0.92635 0.95010 1.81272 1.06773 1.10334 1.06730 1.20989 0.91402 0.98040 0.92480 1.21022 1.00971 0.91901 1.04249 0.89654 0.89954 0.89625 0.86844 0.86833 0.76960 0.91607 0.88872 0.90451 0.88966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.51 9.81 36.00 0.35 -0.16 16 2 C 0.05 0.46 6.86 -82.48 -0.57 -0.11 16 3 N -0.20 -2.63 11.39 33.56 0.38 -2.25 16 4 N -0.24 -3.60 10.34 31.78 0.33 -3.27 16 5 C 0.07 1.02 7.09 -16.21 -0.11 0.91 16 6 S 0.07 1.18 20.29 -107.50 -2.18 -1.00 16 7 C -0.13 -2.41 5.34 36.01 0.19 -2.22 16 8 C 0.45 10.50 7.80 -10.98 -0.09 10.41 16 9 O -0.58 -15.72 15.44 5.54 0.09 -15.64 16 10 N -0.54 -13.64 5.29 -10.96 -0.06 -13.70 16 11 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 12 H 0.11 3.06 7.16 -52.48 -0.38 2.69 16 13 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 14 N -0.89 -23.85 13.05 55.50 0.72 -23.13 16 15 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 16 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 C -0.02 -0.24 5.79 -106.28 -0.62 -0.86 16 20 C 0.25 3.26 13.14 -22.47 -0.30 2.96 16 21 N -0.38 -5.38 18.54 41.84 0.78 -4.60 16 22 C -0.01 -0.13 5.96 -103.84 -0.62 -0.75 16 23 C -0.12 -0.64 9.31 36.01 0.34 -0.31 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.22 6.04 -51.93 -0.31 -0.09 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.11 1.89 8.13 -51.91 -0.42 1.47 16 28 H 0.11 1.89 8.13 -51.92 -0.42 1.47 16 29 H 0.40 9.46 7.90 -40.82 -0.32 9.14 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.44 7.26 -51.93 -0.38 0.07 16 33 H 0.09 0.25 6.06 -51.93 -0.31 -0.07 16 LS Contribution 314.91 15.07 4.75 4.75 Total: -1.00 -32.18 314.91 -4.83 -37.01 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -2.95 Total: 4.19 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -1.66 Total: 2.00 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 2.15 Total: -46.95 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.09 Total: -15.64 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.18 Total: -1.00 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.18 -4.83 -37.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358283211.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.098 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds