Wall clock time and date at job start Tue Mar 31 2020 02:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31916 * 119.89649 * 2 1 4 4 N 1.28272 * 122.68049 * 180.02562 * 3 2 1 5 5 C 1.32657 * 122.18816 * 0.02562 * 4 3 2 6 6 S 1.76199 * 120.28892 * 179.97438 * 5 4 3 7 7 C 1.81002 * 100.00182 * 0.02562 * 6 5 4 8 8 C 1.50703 * 109.47349 * 180.02562 * 7 6 5 9 9 O 1.21296 * 119.99728 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99768 * 180.02562 * 8 7 6 11 11 C 1.37096 * 119.99636 * 179.97438 * 10 8 7 12 12 H 1.08005 * 120.00406 * 359.97438 * 11 10 8 13 13 C 1.38955 * 120.00133 * 179.97438 * 11 10 8 14 14 N 1.31412 * 119.99633 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00085 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47377 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46882 * 120.00381 * 15 13 11 18 18 H 1.48500 * 109.46940 * 240.00230 * 15 13 11 19 19 C 1.40853 * 119.42276 * 0.25252 * 5 4 3 20 20 C 1.43200 * 121.19637 * 179.72210 * 19 5 4 21 21 N 4.80802 * 136.65440 * 180.28644 * 2 1 3 22 22 C 1.38454 * 119.90210 * 180.02562 * 2 1 3 23 23 C 1.50708 * 121.04798 * 359.97438 * 22 2 1 24 24 H 1.08994 * 109.47092 * 90.00148 * 1 2 3 25 25 H 1.09006 * 109.46727 * 209.99809 * 1 2 3 26 26 H 1.08997 * 109.47288 * 329.99260 * 1 2 3 27 27 H 1.09005 * 109.46889 * 299.99975 * 7 6 5 28 28 H 1.09000 * 109.47231 * 59.99947 * 7 6 5 29 29 H 0.96993 * 120.00373 * 359.97438 * 10 8 7 30 30 H 0.96995 * 119.99666 * 179.97438 * 14 13 11 31 31 H 1.08998 * 109.46798 * 89.99651 * 23 22 2 32 32 H 1.08996 * 109.46625 * 209.99741 * 23 22 2 33 33 H 1.08996 * 109.46760 * 330.00295 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1645 1.1436 0.0000 4 7 3.4457 1.2059 -0.0005 5 6 4.2060 0.1189 -0.0015 6 16 5.9621 0.2627 -0.0028 7 6 6.1299 2.0650 -0.0014 8 6 7.5912 2.4335 -0.0029 9 8 8.4361 1.5632 -0.0043 10 7 7.9591 3.7301 -0.0017 11 6 9.2885 4.0653 -0.0025 12 1 10.0409 3.2904 -0.0038 13 6 9.6679 5.4020 -0.0018 14 7 8.7525 6.3448 0.0002 15 14 11.4792 5.8588 -0.0022 16 1 12.3016 4.6223 -0.0040 17 1 11.7875 6.6595 -1.2143 18 1 11.7885 6.6577 1.2107 19 6 3.5973 -1.1513 -0.0075 20 6 4.3814 -2.3495 -0.0148 21 7 5.0035 -3.3002 -0.0165 22 6 2.1972 -1.2002 -0.0005 23 6 1.4654 -2.5177 -0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 5.6512 2.4751 -0.8907 28 1 5.6527 2.4736 0.8893 29 1 7.2835 4.4260 -0.0002 30 1 9.0174 7.2779 0.0011 31 1 1.2885 -2.8350 -1.0282 32 1 2.0673 -3.2675 0.5128 33 1 0.5112 -2.4032 0.5136 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358283211.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:36 Heat of formation + Delta-G solvation = 21.687989 kcal Electronic energy + Delta-G solvation = -19373.418925 eV Core-core repulsion = 16139.156948 eV Total energy + Delta-G solvation = -3234.261977 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.31535 -40.19254 -38.19675 -36.13497 -36.10761 -34.58392 -33.46341 -31.16223 -29.99988 -29.22170 -26.71467 -25.60368 -24.18580 -21.58820 -20.22459 -19.98974 -19.46205 -18.52313 -17.79797 -16.91439 -16.54334 -16.26381 -16.08941 -15.63471 -15.16346 -14.90808 -14.65171 -14.45209 -14.40961 -14.25279 -14.04905 -13.83082 -13.73158 -13.53395 -13.52578 -12.93542 -12.73445 -12.49344 -12.35082 -12.10900 -11.61749 -11.61267 -11.55349 -10.97767 -10.81490 -10.65824 -10.13592 -8.98710 -8.54003 -6.04375 -0.96641 -0.46400 0.05198 0.80610 1.28157 1.32725 1.41543 1.55957 1.60470 1.84854 2.26223 2.32986 2.33736 2.87529 3.03197 3.11917 3.23717 3.40259 3.59361 4.02944 4.07807 4.12284 4.20151 4.37635 4.59590 4.68666 4.69537 4.88825 4.99719 5.11359 5.35728 5.43373 5.86751 6.07609 6.43636 7.00130 7.37830 7.39230 7.90529 8.63151 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.029407 B = 0.003306 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.910210 B = 8468.402502 C = 9394.558185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.064 3.936 3 N -0.232 5.232 4 N -0.268 5.268 5 C 0.068 3.932 6 S 0.023 5.977 7 C -0.113 4.113 8 C 0.447 3.553 9 O -0.621 6.621 10 N -0.553 5.553 11 C -0.339 4.339 12 H 0.083 0.917 13 C -0.007 4.007 14 N -0.913 5.913 15 Si 0.997 3.003 16 H -0.273 1.273 17 H -0.269 1.269 18 H -0.269 1.269 19 C -0.032 4.032 20 C 0.270 3.730 21 N -0.405 5.405 22 C 0.009 3.991 23 C -0.126 4.126 24 H 0.105 0.895 25 H 0.117 0.883 26 H 0.085 0.915 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.401 0.599 30 H 0.281 0.719 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.125 -12.462 -0.084 25.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.086 4.086 3 N -0.074 5.074 4 N -0.114 5.114 5 C -0.190 4.190 6 S 0.262 5.738 7 C -0.264 4.264 8 C 0.233 3.767 9 O -0.510 6.510 10 N -0.189 5.189 11 C -0.468 4.468 12 H 0.101 0.899 13 C -0.208 4.208 14 N -0.553 5.553 15 Si 0.820 3.180 16 H -0.197 1.197 17 H -0.194 1.194 18 H -0.194 1.194 19 C -0.052 4.052 20 C -0.046 4.046 21 N -0.081 5.081 22 C -0.006 4.006 23 C -0.183 4.183 24 H 0.124 0.876 25 H 0.135 0.865 26 H 0.104 0.896 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.235 0.765 30 H 0.091 0.909 31 H 0.133 0.867 32 H 0.092 0.908 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -19.660 -13.354 -0.084 23.766 hybrid contribution -0.048 0.864 -0.002 0.865 sum -19.707 -12.490 -0.086 23.332 Atomic orbital electron populations 1.20992 0.83169 1.06074 1.05591 1.23351 1.01249 0.87766 0.96195 1.72604 1.01000 1.26716 1.07062 1.73736 0.99970 1.23746 1.13908 1.25378 1.02407 0.92863 0.98304 1.86701 0.91317 1.07080 1.88702 1.23468 0.97549 0.95976 1.09448 1.19727 0.89473 0.83393 0.84131 1.90542 1.53671 1.48901 1.57853 1.41785 1.08331 1.05545 1.63225 1.19770 0.83568 0.92840 1.50627 0.89859 1.26119 1.04546 0.94584 0.95600 1.69678 1.35325 1.01283 1.48990 0.84822 0.76492 0.78219 0.78505 1.19705 1.19372 1.19367 1.16447 0.92937 0.86443 1.09385 1.24921 0.93287 0.92364 0.94076 1.81282 1.07431 1.11485 1.07922 1.21503 0.89939 0.99932 0.89259 1.21269 1.01855 0.89138 1.05991 0.87629 0.86509 0.89589 0.85451 0.85448 0.76496 0.90922 0.86670 0.90830 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.55 9.81 71.23 0.70 0.15 16 2 C 0.06 1.00 6.86 42.60 0.29 1.29 16 3 N -0.23 -5.66 11.39 -47.73 -0.54 -6.20 16 4 N -0.27 -7.84 10.34 -53.37 -0.55 -8.39 16 5 C 0.07 1.96 7.09 85.21 0.60 2.56 16 6 S 0.02 0.81 20.29 -56.49 -1.15 -0.34 16 7 C -0.11 -4.22 5.34 71.24 0.38 -3.84 16 8 C 0.45 21.83 7.80 87.66 0.68 22.51 16 9 O -0.62 -34.96 15.44 -3.08 -0.05 -35.01 16 10 N -0.55 -28.70 5.29 -306.97 -1.62 -30.32 16 11 C -0.34 -19.21 9.68 84.04 0.81 -18.39 16 12 H 0.08 5.03 7.16 -2.91 -0.02 5.01 16 13 C -0.01 -0.39 5.50 84.93 0.47 0.07 16 14 N -0.91 -48.83 13.05 21.66 0.28 -48.55 16 15 Si 1.00 42.55 29.55 68.60 2.03 44.57 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 18 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 19 C -0.03 -0.74 5.79 -20.94 -0.12 -0.86 16 20 C 0.27 6.79 13.14 88.33 1.16 7.95 16 21 N -0.41 -11.55 18.54 19.00 0.35 -11.20 16 22 C 0.01 0.13 5.96 -19.36 -0.12 0.02 16 23 C -0.13 -0.71 9.31 71.24 0.66 -0.05 16 24 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 25 H 0.12 -0.12 6.04 -2.38 -0.01 -0.14 16 26 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.13 4.35 8.13 -2.39 -0.02 4.33 16 28 H 0.13 4.35 8.13 -2.40 -0.02 4.33 16 29 H 0.40 19.69 7.90 -92.71 -0.73 18.96 16 30 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 31 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.07 0.57 7.26 -2.39 -0.02 0.56 16 33 H 0.13 -0.13 6.06 -2.39 -0.01 -0.14 16 Total: -1.00 -73.11 314.91 4.73 -68.38 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.45 Total: 15.63 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 5.53 Total: 11.43 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -2.08 Total: -104.66 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.05 Total: -35.01 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -1.15 Total: -0.34 kcal Total: -73.11 4.73 -68.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358283211.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.064 kcal (2) G-P(sol) polarization free energy of solvation -73.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds