Wall clock time and date at job start Tue Mar 31 2020 02:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86801 * 120.00062 * 2 1 4 4 H 1.48498 * 109.46986 * 239.99667 * 3 2 1 5 5 H 1.48498 * 109.47099 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46999 * 119.99749 * 3 2 1 7 7 C 1.40051 * 120.00393 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00350 * 180.02562 * 7 2 1 9 9 C 1.46383 * 119.99688 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99984 * 359.97438 * 9 7 2 11 11 N 1.34773 * 119.99945 * 179.97438 * 9 7 2 12 12 N 1.40102 * 119.99945 * 179.97438 * 11 9 7 13 13 C 1.36260 * 119.99926 * 185.05556 * 12 11 9 14 14 C 1.35280 * 124.83865 * 185.17806 * 13 12 11 15 15 C 1.40195 * 124.83963 * 359.97438 * 14 13 12 16 16 O 1.21534 * 120.00192 * 354.62552 * 15 14 13 17 17 C 1.50699 * 119.99907 * 174.62857 * 15 14 13 18 18 F 1.39905 * 109.47131 * 179.97438 * 17 15 14 19 19 F 1.39902 * 109.47017 * 299.99621 * 17 15 14 20 20 F 1.39895 * 109.47360 * 60.00117 * 17 15 14 21 21 C 1.51126 * 110.31833 * 180.02562 * 14 13 12 22 22 C 1.54497 * 104.98376 * 343.19681 * 21 14 13 23 23 C 1.51129 * 124.84024 * 5.22673 * 13 12 11 24 24 H 0.96997 * 119.99877 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00295 * 0.02562 * 11 9 7 26 26 H 0.97000 * 120.00030 * 5.05494 * 12 11 9 27 27 H 1.08997 * 110.34054 * 224.31824 * 21 14 13 28 28 H 1.08998 * 110.33843 * 102.07186 * 21 14 13 29 29 H 1.09001 * 110.91605 * 267.34493 * 22 21 14 30 30 H 1.08998 * 110.94966 * 143.73078 * 22 21 14 31 31 H 1.08994 * 110.34090 * 77.88387 * 23 13 12 32 32 H 1.08997 * 110.34005 * 315.63257 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6963 -1.2124 5 1 1.2757 2.7464 -0.0006 6 1 3.0944 1.6964 1.2126 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4806 0.0005 10 8 0.0582 -2.4806 0.0005 11 7 1.9490 -3.6477 0.0005 12 7 1.2485 -4.8610 0.0011 13 6 1.9259 -6.0387 0.1051 14 6 1.3619 -7.2651 0.0160 15 6 -0.0029 -7.5056 -0.1959 16 8 -0.7874 -6.5775 -0.2166 17 6 -0.4973 -8.9147 -0.3981 18 9 -1.8833 -8.9000 -0.5882 19 9 0.1223 -9.4694 -1.5232 20 9 -0.1900 -9.6831 0.7299 21 6 2.4127 -8.3390 0.1788 22 6 3.7599 -7.6172 -0.0472 23 6 3.4142 -6.1611 0.3374 24 1 -0.4850 0.8400 -0.0004 25 1 2.9190 -3.6477 0.0009 26 1 0.2813 -4.8627 -0.0726 27 1 2.2728 -9.1221 -0.5664 28 1 2.3721 -8.7596 1.1836 29 1 4.0657 -7.6820 -1.0914 30 1 4.5323 -8.0196 0.6082 31 1 3.6502 -5.9795 1.3859 32 1 3.9559 -5.4625 -0.3002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408563041.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:25 Heat of formation + Delta-G solvation = -206.878410 kcal Electronic energy + Delta-G solvation = -23432.126264 eV Core-core repulsion = 19171.050542 eV Total energy + Delta-G solvation = -4261.075722 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.082 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -51.26300 -48.78765 -48.73040 -41.49449 -39.88104 -38.75095 -36.48948 -34.74618 -32.55972 -31.33016 -28.84509 -28.23040 -27.26498 -23.58518 -23.08899 -21.50087 -21.19353 -19.99066 -19.68494 -19.18321 -18.49723 -18.36598 -17.60857 -16.95446 -16.66927 -15.84303 -15.71758 -15.56775 -15.36503 -15.18472 -15.13628 -15.01300 -14.89237 -14.88089 -14.72994 -14.12929 -13.85756 -13.69611 -13.29775 -13.28278 -12.83042 -12.76025 -12.49210 -12.10391 -12.00047 -11.75602 -11.04135 -11.00279 -10.28569 -10.26032 -8.53390 -8.45246 -7.03275 -0.22861 1.02625 1.42617 1.43739 1.46236 1.59412 1.59668 2.24110 2.31054 2.44454 2.95607 3.07198 3.25715 3.42310 3.64986 3.84926 4.22767 4.28260 4.56507 4.70657 4.80465 4.87286 5.06736 5.20255 5.22215 5.30799 5.37306 5.46289 5.84747 6.12499 6.24646 6.46225 6.69948 7.12640 8.19230 8.49445 Molecular weight = 292.08amu Principal moments of inertia in cm(-1) A = 0.026769 B = 0.003882 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.736100 B = 7210.328707 C = 8051.704702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.028 3.972 3 Si 1.010 2.990 4 H -0.250 1.250 5 H -0.280 1.280 6 H -0.248 1.248 7 C -0.549 4.549 8 H 0.110 0.890 9 C 0.531 3.469 10 O -0.624 6.624 11 N -0.553 5.553 12 N -0.460 5.460 13 C 0.282 3.718 14 C -0.406 4.406 15 C 0.353 3.647 16 O -0.515 6.515 17 C 0.434 3.566 18 F -0.184 7.184 19 F -0.165 7.165 20 F -0.164 7.164 21 C -0.051 4.051 22 C -0.099 4.099 23 C -0.103 4.103 24 H 0.279 0.721 25 H 0.428 0.572 26 H 0.432 0.568 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.122 0.878 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.749 -14.096 0.630 19.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.189 4.189 3 Si 0.828 3.172 4 H -0.173 1.173 5 H -0.205 1.205 6 H -0.172 1.172 7 C -0.586 4.586 8 H 0.128 0.872 9 C 0.338 3.662 10 O -0.508 6.508 11 N -0.307 5.307 12 N -0.170 5.170 13 C 0.153 3.847 14 C -0.419 4.419 15 C 0.242 3.758 16 O -0.400 6.400 17 C 0.378 3.622 18 F -0.165 7.165 19 F -0.146 7.146 20 F -0.146 7.146 21 C -0.089 4.089 22 C -0.136 4.136 23 C -0.140 4.140 24 H 0.089 0.911 25 H 0.272 0.728 26 H 0.278 0.722 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.132 0.868 31 H 0.140 0.860 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 11.352 -13.318 0.604 17.510 hybrid contribution -0.888 0.289 -0.150 0.946 sum 10.465 -13.028 0.454 16.717 Atomic orbital electron populations 1.70174 1.09900 1.29808 1.34666 1.27115 0.95552 1.05282 0.90920 0.84879 0.77979 0.73620 0.80734 1.17317 1.20457 1.17198 1.21251 0.95509 0.87559 1.54270 0.87194 1.19233 0.87412 0.82501 0.77064 1.90656 1.16193 1.86567 1.57431 1.45803 1.07857 0.94553 1.82473 1.44028 1.09954 0.97433 1.65587 1.21549 0.97540 0.82654 0.82944 1.19835 0.94144 0.95591 1.32313 1.20497 0.90569 0.86924 0.77788 1.90630 1.58752 1.43969 1.46645 1.20988 0.75553 0.90644 0.74986 1.93178 1.31397 1.96955 1.94991 1.93189 1.82238 1.87022 1.52188 1.93197 1.92660 1.77455 1.51247 1.20790 0.91060 0.94559 1.02537 1.22312 0.96733 0.90828 1.03756 1.21786 0.85302 1.01682 1.05254 0.91052 0.72833 0.72178 0.90850 0.90167 0.89508 0.86768 0.85995 0.87689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.50 11.83 21.84 0.26 -47.24 16 2 C 0.03 1.43 5.50 85.31 0.47 1.90 16 3 Si 1.01 36.87 29.56 68.60 2.03 38.90 16 4 H -0.25 -8.43 7.11 99.48 0.71 -7.72 16 5 H -0.28 -10.17 7.11 99.48 0.71 -9.46 16 6 H -0.25 -8.35 7.11 99.48 0.71 -7.64 16 7 C -0.55 -27.74 9.54 24.83 0.24 -27.50 16 8 H 0.11 4.63 7.85 -2.91 -0.02 4.60 16 9 C 0.53 28.63 7.86 86.36 0.68 29.31 16 10 O -0.62 -40.59 14.86 -4.31 -0.06 -40.65 16 11 N -0.55 -22.56 6.25 -176.62 -1.10 -23.67 16 12 N -0.46 -18.32 6.25 -46.98 -0.29 -18.62 16 13 C 0.28 8.32 7.00 41.32 0.29 8.60 16 14 C -0.41 -11.76 5.83 -19.94 -0.12 -11.88 16 15 C 0.35 12.42 6.47 26.16 0.17 12.59 16 16 O -0.52 -22.77 14.69 -3.82 -0.06 -22.83 16 17 C 0.43 13.25 2.95 71.24 0.21 13.46 16 18 F -0.18 -6.24 16.92 44.97 0.76 -5.48 16 19 F -0.16 -4.52 16.13 44.97 0.73 -3.79 16 20 F -0.16 -4.44 16.67 44.97 0.75 -3.69 16 21 C -0.05 -0.98 5.62 30.49 0.17 -0.80 16 22 C -0.10 -1.25 7.13 31.62 0.23 -1.02 16 23 C -0.10 -1.77 6.03 30.50 0.18 -1.58 16 24 H 0.28 14.77 8.29 -92.71 -0.77 14.00 16 25 H 0.43 13.27 7.37 -213.32 -1.57 11.69 16 26 H 0.43 20.69 5.50 -213.32 -1.17 19.52 16 27 H 0.07 1.33 6.97 -2.39 -0.02 1.32 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.10 1.51 7.43 -2.39 -0.02 1.49 16 Total: -1.00 -75.44 294.40 3.99 -71.45 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: -1.53 Total: 32.56 kcal Atomic # 6 Polarization: 20.56 SS G_CDS: 2.52 Total: 23.07 kcal Atomic # 7 Polarization: -88.39 SS G_CDS: -1.14 Total: -89.53 kcal Atomic # 8 Polarization: -63.36 SS G_CDS: -0.12 Total: -63.48 kcal Atomic # 9 Polarization: -15.20 SS G_CDS: 2.24 Total: -12.97 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.90 kcal Total: -75.44 3.99 -71.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408563041.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.427 kcal (2) G-P(sol) polarization free energy of solvation -75.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds