Wall clock time and date at job start Tue Mar 31 2020 02:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00282 * 2 1 4 4 H 1.48493 * 109.47636 * 270.00714 * 3 2 1 5 5 H 1.48507 * 109.46886 * 30.00531 * 3 2 1 6 6 H 1.48503 * 109.47025 * 150.00079 * 3 2 1 7 7 C 1.37872 * 119.99489 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00830 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99711 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.47361 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00368 * 180.02562 * 10 9 7 12 12 O 1.21367 * 119.99912 * 0.02562 * 11 10 9 13 13 C 1.49331 * 120.00156 * 179.97438 * 11 10 9 14 14 O 1.21386 * 119.99619 * 0.02562 * 13 11 10 15 15 N 1.34770 * 119.99815 * 179.97438 * 13 11 10 16 16 C 1.39858 * 119.99943 * 185.27978 * 15 13 11 17 17 C 1.38915 * 120.00781 * 213.40278 * 16 15 13 18 18 C 1.38144 * 120.06523 * 179.75552 * 17 16 15 19 19 C 1.38592 * 120.12285 * 0.44340 * 18 17 16 20 20 C 1.39305 * 119.94961 * 359.54973 * 19 18 17 21 21 C 1.38467 * 119.90656 * 0.23167 * 20 19 18 22 22 O 1.36512 * 108.64100 * 180.24557 * 20 19 18 23 23 C 1.43980 * 105.48950 * 342.70027 * 22 20 19 24 24 O 1.36580 * 131.43896 * 179.85883 * 19 18 17 25 25 H 0.97001 * 119.99581 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47043 * 59.99808 * 9 7 2 27 27 H 1.08999 * 109.47607 * 299.99813 * 9 7 2 28 28 H 0.97002 * 119.99548 * 359.97438 * 10 9 7 29 29 H 0.97004 * 120.00353 * 5.28734 * 15 13 11 30 30 H 1.08001 * 119.97039 * 359.97303 * 17 16 15 31 31 H 1.08000 * 119.94085 * 180.30891 * 18 17 16 32 32 H 1.07997 * 120.01820 * 180.02562 * 21 20 19 33 33 H 1.08996 * 110.56932 * 268.58304 * 23 22 20 34 34 H 1.09003 * 110.56721 * 145.71873 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3248 -2.8217 -0.0009 12 8 6.1136 -1.8993 -0.0005 13 6 5.8226 -4.2297 -0.0002 14 8 5.0337 -5.1522 -0.0002 15 7 7.1476 -4.4759 -0.0007 16 6 7.6146 -5.7895 -0.1115 17 6 8.7823 -6.1689 0.5385 18 6 9.2420 -7.4674 0.4340 19 6 8.5451 -8.3928 -0.3267 20 6 7.3737 -8.0156 -0.9796 21 6 6.9109 -6.7151 -0.8709 22 8 6.8799 -9.0975 -1.6497 23 6 7.9743 -10.0292 -1.7354 24 8 8.7845 -9.7118 -0.5884 25 1 -0.4849 0.8401 0.0004 26 1 3.8751 -0.6805 0.8889 27 1 3.8745 -0.6802 -0.8911 28 1 3.3694 -3.3126 -0.0002 29 1 7.7774 -3.7421 0.0759 30 1 9.3293 -5.4489 1.1290 31 1 10.1473 -7.7614 0.9442 32 1 6.0028 -6.4208 -1.3760 33 1 8.5369 -9.8754 -2.6562 34 1 7.6098 -11.0547 -1.6749 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427882584.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:16 Heat of formation + Delta-G solvation = -92.576063 kcal Electronic energy + Delta-G solvation = -22001.192689 eV Core-core repulsion = 18286.930229 eV Total energy + Delta-G solvation = -3714.262460 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.41753 -40.80788 -38.81241 -37.60741 -36.51838 -35.10349 -34.18889 -32.43578 -30.81523 -29.55999 -28.38196 -26.21106 -24.89033 -23.44571 -22.81223 -21.60987 -20.18680 -19.20204 -18.37413 -18.07165 -17.46870 -16.95912 -16.70024 -16.08513 -15.73489 -15.30963 -15.08427 -14.74839 -14.34604 -14.24615 -14.17360 -13.76818 -13.31703 -13.24725 -13.20199 -13.07477 -12.48198 -12.30987 -11.89417 -11.59025 -11.29933 -11.09478 -10.86195 -10.16801 -10.06060 -9.59525 -9.39019 -8.95701 -8.89130 -8.45390 -8.04726 -6.27584 -4.31813 0.69462 0.93529 1.64789 2.30726 2.56837 3.15648 3.21054 3.23844 3.28731 3.33921 3.52294 3.89819 4.22478 4.26080 4.36637 4.58706 4.72231 4.74872 4.84185 4.96002 5.06541 5.23834 5.36170 5.77197 5.82458 5.88083 5.95982 6.27347 6.54830 6.77894 6.85155 6.87798 6.97436 7.21250 7.60921 7.94338 8.30692 8.41041 8.72310 9.29530 10.84171 Molecular weight = 292.09amu Principal moments of inertia in cm(-1) A = 0.037771 B = 0.002874 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.139759 B = 9741.251780 C =10326.525179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.080 3.920 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.550 4.550 8 H 0.083 0.917 9 C 0.218 3.782 10 N -0.663 5.663 11 C 0.495 3.505 12 O -0.537 6.537 13 C 0.509 3.491 14 O -0.496 6.496 15 N -0.648 5.648 16 C 0.164 3.836 17 C -0.133 4.133 18 C -0.078 4.078 19 C 0.012 3.988 20 C 0.055 3.945 21 C -0.105 4.105 22 O -0.305 6.305 23 C 0.213 3.787 24 O -0.310 6.310 25 H 0.269 0.731 26 H 0.034 0.966 27 H 0.029 0.971 28 H 0.411 0.589 29 H 0.427 0.573 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.150 0.850 33 H 0.084 0.916 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.862 -16.036 -1.671 25.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.587 4.587 8 H 0.101 0.899 9 C 0.096 3.904 10 N -0.312 5.312 11 C 0.273 3.727 12 O -0.416 6.416 13 C 0.292 3.708 14 O -0.368 6.368 15 N -0.295 5.295 16 C 0.069 3.931 17 C -0.154 4.154 18 C -0.097 4.097 19 C -0.033 4.033 20 C 0.010 3.990 21 C -0.126 4.126 22 O -0.221 6.221 23 C 0.101 3.899 24 O -0.226 6.226 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.247 0.753 29 H 0.265 0.735 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.167 0.833 33 H 0.101 0.899 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 19.488 -16.047 -1.675 25.300 hybrid contribution 0.256 0.633 -0.132 0.696 sum 19.745 -15.414 -1.807 25.114 Atomic orbital electron populations 1.69877 1.06224 1.27570 1.48766 1.24783 0.94818 0.99138 0.93741 0.86818 0.80533 0.83215 0.79111 1.19732 1.20756 1.18471 1.21045 0.88086 0.95577 1.54021 0.89888 1.19734 0.95855 0.77283 0.97492 1.46136 1.04881 1.12403 1.67764 1.19649 0.84710 0.87835 0.80496 1.90735 1.55306 1.45014 1.50542 1.20826 0.82431 0.91034 0.76533 1.90793 1.54970 1.45821 1.45258 1.43166 1.07844 1.07150 1.71389 1.17197 0.94827 0.84690 0.96407 1.20673 0.97447 0.95974 1.01261 1.19784 1.00031 0.90135 0.99776 1.19793 0.96490 0.84225 1.02815 1.19450 0.93011 0.89234 0.97299 1.19945 1.02984 0.88595 1.01072 1.87406 1.35138 1.25569 1.73996 1.25628 0.80076 0.95315 0.88854 1.87361 1.65326 1.22267 1.47651 0.92090 0.94826 0.95279 0.75317 0.73450 0.83719 0.84129 0.83260 0.89858 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.96 55.43 0.77 -25.18 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 20.59 27.47 -169.99 -4.67 15.92 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 7 C -0.55 -14.76 9.83 -34.44 -0.34 -15.10 16 8 H 0.08 2.36 7.84 -52.49 -0.41 1.94 16 9 C 0.22 5.11 4.50 -5.19 -0.02 5.09 16 10 N -0.66 -13.35 5.54 -61.94 -0.34 -13.69 16 11 C 0.49 9.00 7.89 -11.64 -0.09 8.91 16 12 O -0.54 -10.58 16.48 5.48 0.09 -10.49 16 13 C 0.51 7.90 7.62 -11.64 -0.09 7.81 16 14 O -0.50 -8.58 14.16 5.47 0.08 -8.51 16 15 N -0.65 -7.85 5.33 -10.29 -0.05 -7.90 16 16 C 0.16 1.90 6.28 -83.71 -0.53 1.38 16 17 C -0.13 -1.19 9.96 -39.37 -0.39 -1.58 16 18 C -0.08 -0.70 10.05 -39.49 -0.40 -1.10 16 19 C 0.01 0.13 7.15 -39.05 -0.28 -0.15 16 20 C 0.06 0.69 7.14 -39.10 -0.28 0.41 16 21 C -0.11 -1.38 8.67 -39.26 -0.34 -1.72 16 22 O -0.31 -3.63 11.40 -45.73 -0.52 -4.15 16 23 C 0.21 1.68 8.89 101.05 0.90 2.58 16 24 O -0.31 -3.21 11.41 -45.95 -0.52 -3.74 16 25 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.03 0.81 7.20 -51.93 -0.37 0.44 16 27 H 0.03 0.70 7.57 -51.93 -0.39 0.30 16 28 H 0.41 7.91 7.79 -40.82 -0.32 7.59 16 29 H 0.43 4.28 8.30 -40.82 -0.34 3.94 16 30 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.15 2.17 6.41 -52.49 -0.34 1.83 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 305.75 15.07 4.61 4.61 Total: -1.00 -32.33 305.75 -5.55 -37.88 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -3.03 Total: 6.62 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -1.95 Total: 8.63 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: 0.38 Total: -46.77 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.88 Total: -26.88 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.33 -5.55 -37.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427882584.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.698 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds