Wall clock time and date at job start Tue Mar 31 2020 02:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86805 * 119.99526 * 2 1 4 4 H 1.48497 * 109.47239 * 270.00043 * 3 2 1 5 5 H 1.48500 * 109.47021 * 30.00748 * 3 2 1 6 6 H 1.48505 * 109.46742 * 150.00069 * 3 2 1 7 7 C 1.38943 * 120.00547 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99871 * 359.97438 * 7 2 1 9 9 N 1.37103 * 120.00544 * 179.97438 * 7 2 1 10 10 C 1.34772 * 119.99953 * 179.97438 * 9 7 2 11 11 O 1.21284 * 120.00295 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99663 * 180.02562 * 10 9 7 13 13 N 1.46495 * 109.47246 * 180.02562 * 12 10 9 14 14 C 1.39982 * 120.00178 * 180.02562 * 13 12 10 15 15 C 1.40429 * 125.97621 * 0.22150 * 14 13 12 16 16 C 1.35250 * 107.86589 * 180.14917 * 15 14 13 17 17 N 1.34965 * 107.85873 * 359.64258 * 16 15 14 18 18 C 1.46504 * 125.97161 * 180.22557 * 17 16 15 19 19 C 1.53001 * 109.47153 * 124.99928 * 18 17 16 20 20 F 1.39910 * 109.46490 * 60.00023 * 19 18 17 21 21 F 1.39899 * 109.47375 * 180.02562 * 19 18 17 22 22 F 1.39906 * 109.47179 * 300.00533 * 19 18 17 23 23 N 1.31223 * 125.97891 * 179.97438 * 14 13 12 24 24 H 0.96992 * 120.00392 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99453 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.46998 * 60.00054 * 12 10 9 27 27 H 1.09008 * 109.47126 * 300.00560 * 12 10 9 28 28 H 0.97001 * 119.99959 * 359.97438 * 13 12 10 29 29 H 1.07999 * 126.07302 * 0.02562 * 15 14 13 30 30 H 1.08002 * 126.07384 * 179.91231 * 16 15 14 31 31 H 1.08993 * 109.47190 * 245.00099 * 18 17 16 32 32 H 1.09006 * 109.46655 * 5.00575 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4455 2.6527 0.7002 6 1 3.5456 1.4403 0.7001 7 6 2.0090 -1.2032 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3800 -1.2032 -0.0011 10 6 4.0539 -2.3704 -0.0011 11 8 3.4475 -3.4208 -0.0011 12 6 5.5609 -2.3703 -0.0011 13 7 6.0493 -3.7514 -0.0017 14 6 7.4256 -4.0072 -0.0013 15 6 8.4443 -3.0406 0.0041 16 6 9.6313 -3.6887 -0.0007 17 7 9.3789 -5.0146 -0.0009 18 6 10.3828 -6.0817 -0.0007 19 6 10.1294 -7.0201 1.1808 20 9 8.8527 -7.5808 1.0654 21 9 11.0883 -8.0388 1.1813 22 9 10.2155 -6.2986 2.3763 23 7 7.9895 -5.1920 -0.0013 24 1 -0.4850 0.8399 0.0004 25 1 3.8649 -0.3631 -0.0007 26 1 5.9242 -1.8565 0.8889 27 1 5.9242 -1.8563 -0.8911 28 1 5.4190 -4.4888 -0.0016 29 1 8.3047 -1.9696 0.0091 30 1 10.6078 -3.2274 0.0002 31 1 10.3156 -6.6438 -0.9321 32 1 11.3774 -5.6447 0.0892 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448075672.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:59 Heat of formation + Delta-G solvation = -92.738613 kcal Electronic energy + Delta-G solvation = -22476.485095 eV Core-core repulsion = 18252.651597 eV Total energy + Delta-G solvation = -4223.833498 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.089 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.34203 -47.92781 -47.73396 -41.14300 -38.62044 -35.62751 -34.12129 -33.05924 -31.78213 -30.28010 -28.49274 -26.91258 -24.24234 -23.63750 -21.44693 -20.32033 -19.50265 -18.89819 -18.73095 -18.44620 -18.06633 -17.15276 -16.20724 -15.37311 -15.29417 -14.90000 -14.74256 -14.63079 -14.53697 -14.32878 -14.25006 -13.96766 -13.89422 -13.84817 -13.32991 -13.10034 -12.97019 -12.54754 -12.40557 -12.16893 -12.11536 -11.25681 -10.65313 -10.46048 -10.33895 -10.05098 -9.68322 -8.82016 -8.74212 -8.29330 -7.60365 -6.39000 -3.91706 1.66713 1.97397 2.44162 2.97920 3.02382 3.06551 3.11360 3.36493 3.48345 3.58960 3.61808 3.94892 4.03760 4.37376 4.52864 4.57793 4.64112 5.14891 5.27356 5.50316 5.61860 5.68888 5.75539 5.78769 6.27489 6.78183 7.15666 7.46232 7.76840 8.01508 8.23618 8.47826 8.84132 9.31355 9.66079 10.73467 Molecular weight = 292.09amu Principal moments of inertia in cm(-1) A = 0.039473 B = 0.002820 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.178360 B = 9928.353942 C =10340.852037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.044 3.956 3 Si 0.880 3.120 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.309 4.309 8 H 0.121 0.879 9 N -0.579 5.579 10 C 0.440 3.560 11 O -0.573 6.573 12 C 0.126 3.874 13 N -0.698 5.698 14 C 0.356 3.644 15 C -0.294 4.294 16 C 0.081 3.919 17 N -0.395 5.395 18 C 0.108 3.892 19 C 0.442 3.558 20 F -0.161 7.161 21 F -0.182 7.182 22 F -0.180 7.180 23 N -0.345 5.345 24 H 0.275 0.725 25 H 0.373 0.627 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.417 0.583 29 H 0.150 0.850 30 H 0.175 0.825 31 H 0.125 0.875 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.101 -5.743 -0.249 26.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.160 4.160 3 Si 0.706 3.294 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.217 5.217 10 C 0.226 3.774 11 O -0.456 6.456 12 C -0.003 4.003 13 N -0.342 5.342 14 C 0.096 3.904 15 C -0.326 4.326 16 C -0.062 4.062 17 N -0.179 5.179 18 C -0.017 4.017 19 C 0.387 3.613 20 F -0.143 7.143 21 F -0.164 7.164 22 F -0.161 7.161 23 N -0.178 5.178 24 H 0.086 0.914 25 H 0.206 0.794 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.257 0.743 29 H 0.168 0.832 30 H 0.192 0.808 31 H 0.142 0.858 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 25.359 -7.458 -0.225 26.434 hybrid contribution 0.500 1.899 0.228 1.977 sum 25.859 -5.558 0.003 26.450 Atomic orbital electron populations 1.69618 1.05720 1.27752 1.48409 1.25065 0.95524 0.98130 0.97273 0.86657 0.79858 0.83819 0.79018 1.19454 1.20060 1.19278 1.19445 0.78996 0.96805 1.48519 0.86126 1.42107 1.07657 1.06023 1.65914 1.19610 0.88048 0.84864 0.84873 1.90564 1.69140 1.30950 1.54982 1.20872 0.94016 0.83364 1.02083 1.43474 1.00401 1.07772 1.82521 1.19303 0.86219 0.91198 0.93713 1.21205 0.90384 1.00279 1.20720 1.22374 1.00169 0.83261 1.00432 1.47553 1.04346 1.03792 1.62203 1.22566 0.92562 0.89134 0.97436 1.20730 0.75110 0.80663 0.84829 1.93304 1.39179 1.85877 1.95904 1.93204 1.64314 1.62117 1.96734 1.93219 1.95925 1.77517 1.49446 1.77721 0.85185 1.18766 1.36118 0.91419 0.79352 0.90539 0.90519 0.74348 0.83188 0.80761 0.85756 0.84647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.06 13.96 55.50 0.77 -24.29 16 2 C 0.04 1.17 5.50 -17.47 -0.10 1.08 16 3 Si 0.88 18.64 27.74 -169.99 -4.71 13.92 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.08 6.52 56.52 0.37 -4.71 16 7 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 16 8 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 9 N -0.58 -13.24 5.09 -10.96 -0.06 -13.29 16 10 C 0.44 9.65 7.85 -10.99 -0.09 9.56 16 11 O -0.57 -14.98 15.24 5.55 0.08 -14.89 16 12 C 0.13 2.03 6.08 -5.19 -0.03 2.00 16 13 N -0.70 -11.84 5.74 -61.24 -0.35 -12.20 16 14 C 0.36 5.48 8.16 -154.55 -1.26 4.22 16 15 C -0.29 -3.48 10.11 -39.82 -0.40 -3.88 16 16 C 0.08 0.75 11.44 -17.24 -0.20 0.55 16 17 N -0.40 -4.31 3.60 -61.38 -0.22 -4.54 16 18 C 0.11 0.73 6.50 -4.04 -0.03 0.70 16 19 C 0.44 4.21 3.28 37.16 0.12 4.33 16 20 F -0.16 -2.10 16.28 2.25 0.04 -2.06 16 21 F -0.18 -1.55 17.32 2.25 0.04 -1.51 16 22 F -0.18 -2.01 17.24 2.25 0.04 -1.97 16 23 N -0.35 -5.32 11.52 31.41 0.36 -4.96 16 24 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.37 7.34 5.76 -40.82 -0.24 7.10 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 28 H 0.42 7.91 7.56 -40.82 -0.31 7.60 16 29 H 0.15 1.48 7.90 -52.49 -0.41 1.07 16 30 H 0.18 0.78 8.06 -52.49 -0.42 0.35 16 31 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.14 0.32 8.07 -51.93 -0.42 -0.10 16 LS Contribution 301.01 15.07 4.54 4.54 Total: -1.00 -34.64 301.01 -4.23 -38.86 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -2.62 Total: 12.50 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: -2.13 Total: 9.88 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: 0.51 Total: -59.27 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.08 Total: -14.89 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.11 Total: -5.54 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -4.71 Total: 13.92 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.64 -4.23 -38.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448075672.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.874 kcal (2) G-P(sol) polarization free energy of solvation -34.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds