Wall clock time and date at job start Tue Mar 31 2020 02:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38312 * 120.91636 * 2 1 4 4 C 1.38474 * 119.54110 * 179.97438 * 3 2 1 5 5 N 1.31815 * 121.33641 * 359.97438 * 4 3 2 6 6 C 1.32222 * 121.60440 * 359.97438 * 5 4 3 7 7 N 1.38226 * 133.63960 * 180.31192 * 6 5 4 8 8 H 0.96996 * 126.30748 * 359.95329 * 7 6 5 9 9 C 1.36720 * 107.38825 * 180.09227 * 7 6 5 10 10 S 1.76193 * 125.08073 * 179.87286 * 9 7 6 11 11 C 1.81002 * 100.00049 * 179.72230 * 10 9 7 12 12 C 1.50701 * 109.47156 * 180.02562 * 11 10 9 13 13 O 1.21294 * 119.99849 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99795 * 179.97438 * 12 11 10 15 15 C 1.37101 * 119.99707 * 180.02562 * 14 12 11 16 16 H 1.08002 * 119.99704 * 359.97438 * 15 14 12 17 17 C 1.38941 * 119.99927 * 180.02562 * 15 14 12 18 18 N 1.31417 * 120.00180 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00273 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47117 * 59.99412 * 19 17 15 21 21 H 1.48498 * 109.47600 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46756 * 300.00019 * 19 17 15 23 23 N 1.31063 * 109.83362 * 359.61265 * 9 7 6 24 24 C 1.35753 * 109.47483 * 0.24119 * 23 9 7 25 25 H 1.09008 * 109.47207 * 270.02821 * 1 2 3 26 26 H 1.08994 * 109.46917 * 30.02600 * 1 2 3 27 27 H 1.08993 * 109.47084 * 150.02946 * 1 2 3 28 28 H 1.08001 * 120.23336 * 359.94756 * 3 2 1 29 29 H 1.07992 * 119.33312 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47115 * 60.00094 * 11 10 9 31 31 H 1.09001 * 109.46925 * 300.00251 * 11 10 9 32 32 H 0.96995 * 120.00011 * 0.02562 * 14 12 11 33 33 H 0.97000 * 119.99884 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2177 1.1866 0.0000 4 6 3.6020 1.1534 0.0005 5 7 4.2603 0.0114 0.0016 6 6 3.6307 -1.1513 0.0026 7 7 4.0562 -2.4665 0.0092 8 1 4.9766 -2.7723 0.0141 9 6 2.9406 -3.2568 0.0046 10 16 2.9477 -5.0187 0.0067 11 6 1.1665 -5.3403 0.0068 12 6 0.9246 -6.8278 0.0092 13 8 1.8641 -7.5950 0.0111 14 7 -0.3357 -7.3055 0.0101 15 6 -0.5557 -8.6588 0.0128 16 1 0.2808 -9.3419 0.0138 17 6 -1.8549 -9.1513 0.0133 18 7 -2.8728 -8.3201 0.0117 19 14 -2.1548 -10.9951 0.0177 20 1 -1.5440 -11.5930 1.2320 21 1 -3.6162 -11.2590 0.0182 22 1 -1.5426 -11.5990 -1.1930 23 7 1.8650 -2.5079 0.0039 24 6 2.2250 -1.1989 0.0027 25 1 -0.3634 0.0005 1.0277 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8902 -0.5133 28 1 1.6965 2.1326 -0.0009 29 1 4.1535 2.0819 0.0001 30 1 0.7178 -4.9003 -0.8838 31 1 0.7175 -4.8981 0.8961 32 1 -1.0869 -6.6920 0.0089 33 1 -3.7798 -8.6640 0.0124 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450927350.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:33 Heat of formation + Delta-G solvation = 40.995725 kcal Electronic energy + Delta-G solvation = -19455.673380 eV Core-core repulsion = 16222.248650 eV Total energy + Delta-G solvation = -3233.424730 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.25669 -38.45632 -38.26292 -34.56492 -34.13452 -32.04391 -31.47027 -30.05159 -29.29785 -27.67957 -24.77711 -23.71456 -23.09558 -21.30959 -19.76379 -18.61039 -18.10570 -17.66483 -16.43757 -16.04174 -15.92240 -15.88054 -14.76083 -14.62816 -14.59712 -14.11352 -13.56664 -13.37077 -13.25208 -12.80998 -12.79936 -12.59556 -12.08825 -11.98876 -11.61940 -11.11898 -11.08433 -10.96005 -10.54318 -10.51611 -10.31324 -9.65199 -9.36678 -9.24553 -8.86266 -8.72104 -8.13932 -7.44062 -6.54329 -3.96479 0.59714 1.04012 1.12339 2.17828 2.52303 2.69489 3.12267 3.20650 3.24775 3.65867 3.67620 4.07397 4.10361 4.44503 4.56670 4.69931 4.75955 4.99957 5.10820 5.26303 5.40048 5.50102 5.58049 5.62172 5.74665 5.83007 5.90994 6.06328 6.20189 6.47088 6.82260 7.43583 7.46414 7.73772 7.87340 8.40105 9.00844 9.33909 9.82102 10.62388 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.030693 B = 0.003150 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.043016 B = 8887.159894 C = 9778.755102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.010 3.990 3 C -0.189 4.189 4 C 0.132 3.868 5 N -0.489 5.489 6 C 0.247 3.753 7 N -0.573 5.573 8 H 0.430 0.570 9 C 0.264 3.736 10 S 0.085 5.915 11 C -0.124 4.124 12 C 0.448 3.552 13 O -0.586 6.586 14 N -0.544 5.544 15 C -0.305 4.305 16 H 0.106 0.894 17 C 0.027 3.973 18 N -0.894 5.894 19 Si 0.934 3.066 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 N -0.486 5.486 24 C 0.016 3.984 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.142 0.858 29 H 0.164 0.836 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.396 0.604 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.283 18.025 -0.005 19.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.001 4.001 3 C -0.212 4.212 4 C -0.034 4.034 5 N -0.202 5.202 6 C 0.008 3.992 7 N -0.191 5.191 8 H 0.271 0.729 9 C -0.110 4.110 10 S 0.315 5.685 11 C -0.276 4.276 12 C 0.232 3.768 13 O -0.472 6.472 14 N -0.179 5.179 15 C -0.435 4.435 16 H 0.124 0.876 17 C -0.176 4.176 18 N -0.534 5.534 19 Si 0.761 3.239 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.197 1.197 23 N -0.212 5.212 24 C -0.107 4.107 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.160 0.840 29 H 0.181 0.819 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.230 0.770 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.596 16.311 -0.001 18.438 hybrid contribution -1.323 0.643 0.010 1.471 sum 7.273 16.954 0.009 18.448 Atomic orbital electron populations 1.20762 0.89539 1.03554 1.03085 1.19586 0.96766 0.89380 0.94327 1.21763 0.95277 0.98100 1.06081 1.22469 0.91573 0.94091 0.95287 1.66341 1.41275 0.95959 1.16656 1.18986 0.90955 0.85863 1.03369 1.42531 1.09684 1.02974 1.63866 0.72910 1.26404 0.83165 1.01181 1.00284 1.86402 1.09349 0.82131 1.90621 1.23680 0.94794 1.00978 1.08155 1.18901 0.84711 0.86914 0.86272 1.90564 1.41721 1.57927 1.57013 1.41730 1.05290 1.08332 1.62503 1.19710 0.93453 0.81872 1.48431 0.87590 1.25328 0.94912 1.00703 0.96654 1.69609 0.99298 1.35432 1.49082 0.85861 0.77171 0.81651 0.79243 1.19706 1.20828 1.19700 1.71073 1.25732 1.00309 1.24048 1.19589 0.91680 0.92683 1.06751 0.90346 0.91026 0.90237 0.84007 0.81859 0.86965 0.86965 0.76972 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.07 36.01 0.36 -0.74 16 2 C 0.01 0.12 5.94 -104.03 -0.62 -0.50 16 3 C -0.19 -1.76 9.80 -39.47 -0.39 -2.15 16 4 C 0.13 1.30 11.16 -17.47 -0.19 1.11 16 5 N -0.49 -6.38 10.38 -12.20 -0.13 -6.51 16 6 C 0.25 3.55 8.45 -155.35 -1.31 2.24 16 7 N -0.57 -7.65 6.26 -12.03 -0.08 -7.73 16 8 H 0.43 4.50 8.96 -40.82 -0.37 4.13 16 9 C 0.26 3.99 8.21 -88.35 -0.73 3.27 16 10 S 0.08 1.35 21.45 -107.50 -2.31 -0.95 16 11 C -0.12 -2.19 5.64 36.01 0.20 -1.98 16 12 C 0.45 10.23 7.80 -10.98 -0.09 10.14 16 13 O -0.59 -15.21 15.44 5.55 0.09 -15.12 16 14 N -0.54 -13.34 5.29 -10.96 -0.06 -13.40 16 15 C -0.31 -8.22 9.68 -14.94 -0.14 -8.37 16 16 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 17 C 0.03 0.70 5.50 -17.47 -0.10 0.61 16 18 N -0.89 -23.57 13.05 55.50 0.72 -22.85 16 19 Si 0.93 20.36 29.55 -169.99 -5.02 15.34 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 N -0.49 -7.82 10.57 -10.85 -0.11 -7.93 16 24 C 0.02 0.24 6.96 -84.66 -0.59 -0.35 16 25 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 26 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 27 H 0.08 0.89 8.11 -51.93 -0.42 0.47 16 28 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 29 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.11 1.85 8.14 -51.92 -0.42 1.43 16 31 H 0.11 1.85 8.14 -51.92 -0.42 1.43 16 32 H 0.40 9.29 7.90 -40.82 -0.32 8.97 16 33 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 311.60 15.07 4.70 4.70 Total: -1.00 -31.91 311.60 -8.94 -40.85 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -3.15 Total: 10.32 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -3.59 Total: 3.28 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: 0.35 Total: -58.42 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.09 Total: -15.12 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.31 Total: -0.95 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.91 -8.94 -40.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450927350.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.846 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds