Wall clock time and date at job start Tue Mar 31 2020 02:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38312 * 120.91636 * 2 1 4 4 C 1.38474 * 119.54110 * 179.97438 * 3 2 1 5 5 N 1.31815 * 121.33641 * 359.97438 * 4 3 2 6 6 C 1.32222 * 121.60440 * 359.97438 * 5 4 3 7 7 N 1.38226 * 133.63960 * 180.31192 * 6 5 4 8 8 H 0.96996 * 126.30748 * 359.95329 * 7 6 5 9 9 C 1.36720 * 107.38825 * 180.09227 * 7 6 5 10 10 S 1.76193 * 125.08073 * 179.87286 * 9 7 6 11 11 C 1.81002 * 100.00049 * 179.72230 * 10 9 7 12 12 C 1.50701 * 109.47156 * 180.02562 * 11 10 9 13 13 O 1.21294 * 119.99849 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99795 * 179.97438 * 12 11 10 15 15 C 1.37101 * 119.99707 * 180.02562 * 14 12 11 16 16 H 1.08002 * 119.99704 * 359.97438 * 15 14 12 17 17 C 1.38941 * 119.99927 * 180.02562 * 15 14 12 18 18 N 1.31417 * 120.00180 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00273 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47117 * 59.99412 * 19 17 15 21 21 H 1.48498 * 109.47600 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46756 * 300.00019 * 19 17 15 23 23 N 1.31063 * 109.83362 * 359.61265 * 9 7 6 24 24 C 1.35753 * 109.47483 * 0.24119 * 23 9 7 25 25 H 1.09008 * 109.47207 * 270.02821 * 1 2 3 26 26 H 1.08994 * 109.46917 * 30.02600 * 1 2 3 27 27 H 1.08993 * 109.47084 * 150.02946 * 1 2 3 28 28 H 1.08001 * 120.23336 * 359.94756 * 3 2 1 29 29 H 1.07992 * 119.33312 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47115 * 60.00094 * 11 10 9 31 31 H 1.09001 * 109.46925 * 300.00251 * 11 10 9 32 32 H 0.96995 * 120.00011 * 0.02562 * 14 12 11 33 33 H 0.97000 * 119.99884 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2177 1.1866 0.0000 4 6 3.6020 1.1534 0.0005 5 7 4.2603 0.0114 0.0016 6 6 3.6307 -1.1513 0.0026 7 7 4.0562 -2.4665 0.0092 8 1 4.9766 -2.7723 0.0141 9 6 2.9406 -3.2568 0.0046 10 16 2.9477 -5.0187 0.0067 11 6 1.1665 -5.3403 0.0068 12 6 0.9246 -6.8278 0.0092 13 8 1.8641 -7.5950 0.0111 14 7 -0.3357 -7.3055 0.0101 15 6 -0.5557 -8.6588 0.0128 16 1 0.2808 -9.3419 0.0138 17 6 -1.8549 -9.1513 0.0133 18 7 -2.8728 -8.3201 0.0117 19 14 -2.1548 -10.9951 0.0177 20 1 -1.5440 -11.5930 1.2320 21 1 -3.6162 -11.2590 0.0182 22 1 -1.5426 -11.5990 -1.1930 23 7 1.8650 -2.5079 0.0039 24 6 2.2250 -1.1989 0.0027 25 1 -0.3634 0.0005 1.0277 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8902 -0.5133 28 1 1.6965 2.1326 -0.0009 29 1 4.1535 2.0819 0.0001 30 1 0.7178 -4.9003 -0.8838 31 1 0.7175 -4.8981 0.8961 32 1 -1.0869 -6.6920 0.0089 33 1 -3.7798 -8.6640 0.0124 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450927350.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:32 Heat of formation + Delta-G solvation = 19.550347 kcal Electronic energy + Delta-G solvation = -19456.603322 eV Core-core repulsion = 16222.248650 eV Total energy + Delta-G solvation = -3234.354672 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.25257 -40.17250 -39.35580 -36.10770 -35.47441 -33.46162 -33.02447 -31.16434 -30.69305 -28.54900 -26.70624 -24.72791 -24.02395 -22.30955 -21.53131 -20.14083 -19.55580 -18.76692 -17.82107 -17.45214 -16.98218 -16.87865 -16.50560 -16.25709 -15.92403 -15.52693 -14.73904 -14.42859 -14.38341 -14.14307 -13.91829 -13.58224 -13.53402 -13.49079 -12.90505 -12.74947 -12.47925 -12.14623 -12.11484 -11.93307 -11.82197 -11.57693 -10.64839 -10.31111 -10.30188 -10.10970 -9.76168 -8.63282 -8.52060 -6.02456 -0.33841 -0.19595 0.24585 0.86202 1.37467 1.43217 1.46674 1.54082 1.69700 1.87146 2.27725 2.76449 2.99787 3.14195 3.18908 3.59355 3.69389 3.90111 4.09494 4.14508 4.18636 4.39235 4.52845 4.65734 4.73822 4.78883 4.96093 5.17833 5.37328 5.37954 5.64513 5.88247 5.89302 6.41562 6.44942 6.85138 7.01530 7.39703 7.91522 8.64589 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.030693 B = 0.003150 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.043016 B = 8887.159894 C = 9778.755102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.003 4.003 3 C -0.174 4.174 4 C 0.140 3.860 5 N -0.511 5.511 6 C 0.229 3.771 7 N -0.565 5.565 8 H 0.440 0.560 9 C 0.252 3.748 10 S 0.084 5.916 11 C -0.113 4.113 12 C 0.451 3.549 13 O -0.619 6.619 14 N -0.553 5.553 15 C -0.339 4.339 16 H 0.086 0.914 17 C -0.008 4.008 18 N -0.914 5.914 19 Si 0.996 3.004 20 H -0.270 1.270 21 H -0.270 1.270 22 H -0.270 1.270 23 N -0.503 5.503 24 C -0.021 4.021 25 H 0.083 0.917 26 H 0.101 0.899 27 H 0.057 0.943 28 H 0.186 0.814 29 H 0.207 0.793 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.400 0.600 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.099 20.434 -0.001 21.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.014 4.014 3 C -0.196 4.196 4 C -0.026 4.026 5 N -0.225 5.225 6 C -0.008 4.008 7 N -0.183 5.183 8 H 0.282 0.718 9 C -0.123 4.123 10 S 0.314 5.686 11 C -0.265 4.265 12 C 0.237 3.763 13 O -0.507 6.507 14 N -0.189 5.189 15 C -0.468 4.468 16 H 0.104 0.896 17 C -0.209 4.209 18 N -0.554 5.554 19 Si 0.819 3.181 20 H -0.195 1.195 21 H -0.195 1.195 22 H -0.195 1.195 23 N -0.229 5.229 24 C -0.144 4.144 25 H 0.102 0.898 26 H 0.120 0.880 27 H 0.076 0.924 28 H 0.203 0.797 29 H 0.223 0.777 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.234 0.766 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.416 18.742 0.003 20.545 hybrid contribution -1.203 0.170 0.009 1.215 sum 7.213 18.912 0.012 20.241 Atomic orbital electron populations 1.20785 0.88338 1.03962 1.03519 1.20057 0.97936 0.89316 0.94076 1.22256 0.95160 0.98794 1.03430 1.23354 0.92452 0.94466 0.92309 1.66461 1.41926 0.96242 1.17907 1.19218 0.91074 0.86385 1.04118 1.42449 1.09795 1.02836 1.63218 0.71793 1.25997 0.83837 1.00464 1.02035 1.86299 1.07364 0.83435 1.91506 1.23415 0.96776 0.96949 1.09337 1.19612 0.83691 0.88912 0.84135 1.90537 1.42616 1.59676 1.57860 1.41778 1.06058 1.07838 1.63223 1.19719 0.93570 0.82864 1.50634 0.89569 1.26114 0.94227 1.04909 0.95624 1.69671 0.99673 1.37074 1.49001 0.84942 0.77554 0.76456 0.79141 1.19491 1.19473 1.19480 1.70965 1.26443 1.01389 1.24057 1.20056 0.92584 0.92984 1.08750 0.89819 0.88031 0.92388 0.79698 0.77659 0.85730 0.85735 0.76571 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.92 10.07 71.24 0.72 -1.20 16 2 C 0.00 -0.07 5.94 -19.48 -0.12 -0.19 16 3 C -0.17 -2.54 9.80 22.34 0.22 -2.32 16 4 C 0.14 2.25 11.16 84.75 0.95 3.19 16 5 N -0.51 -12.35 10.38 -192.52 -2.00 -14.35 16 6 C 0.23 6.44 8.45 133.75 1.13 7.57 16 7 N -0.56 -15.11 6.26 -191.97 -1.20 -16.31 16 8 H 0.44 9.26 8.96 -92.71 -0.83 8.43 16 9 C 0.25 7.70 8.21 179.56 1.47 9.17 16 10 S 0.08 2.74 21.45 -56.49 -1.21 1.53 16 11 C -0.11 -4.05 5.64 71.24 0.40 -3.65 16 12 C 0.45 21.12 7.80 87.66 0.68 21.80 16 13 O -0.62 -33.07 15.44 -3.07 -0.05 -33.12 16 14 N -0.55 -27.90 5.29 -306.98 -1.62 -29.53 16 15 C -0.34 -18.70 9.68 84.04 0.81 -17.89 16 16 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 17 C -0.01 -0.40 5.50 84.92 0.47 0.07 16 18 N -0.91 -48.26 13.05 21.66 0.28 -47.98 16 19 Si 1.00 41.67 29.55 68.60 2.03 43.70 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 21 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 N -0.50 -16.26 10.57 -188.25 -1.99 -18.25 16 24 C -0.02 -0.61 6.96 39.49 0.27 -0.33 16 25 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.10 1.13 8.10 -2.39 -0.02 1.11 16 27 H 0.06 1.27 8.11 -2.39 -0.02 1.25 16 28 H 0.19 1.06 8.06 -2.91 -0.02 1.04 16 29 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 30 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 31 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 32 H 0.40 19.22 7.90 -92.71 -0.73 18.49 16 33 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -70.37 311.60 0.87 -69.50 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: -0.38 Total: 28.60 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 7.01 Total: 16.21 kcal Atomic # 7 Polarization: -119.88 SS G_CDS: -6.53 Total: -126.41 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.05 Total: -33.12 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -1.21 Total: 1.53 kcal Total: -70.37 0.87 -69.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450927350.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.045 kcal (2) G-P(sol) polarization free energy of solvation -70.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds