Wall clock time and date at job start Tue Mar 31 2020 02:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47342 * 336.44835 * 3 2 1 5 5 C 1.37096 * 119.99814 * 264.13670 * 4 3 2 6 6 H 1.08004 * 120.00201 * 197.43367 * 5 4 3 7 7 C 1.38952 * 119.99950 * 17.44066 * 5 4 3 8 8 N 1.31409 * 120.00429 * 21.51646 * 7 5 4 9 9 Si 1.86802 * 119.99772 * 201.52265 * 7 5 4 10 10 H 1.48499 * 109.47601 * 89.99649 * 9 7 5 11 11 H 1.48500 * 109.47181 * 209.99940 * 9 7 5 12 12 H 1.48501 * 109.47177 * 329.99650 * 9 7 5 13 13 C 1.34774 * 119.99972 * 84.13769 * 4 3 2 14 14 O 1.21290 * 119.99858 * 179.97438 * 13 4 3 15 15 C 1.50698 * 120.00041 * 0.02562 * 13 4 3 16 16 N 1.46505 * 109.46921 * 179.97438 * 15 13 4 17 17 C 1.34777 * 119.99744 * 179.97438 * 16 15 13 18 18 O 1.21637 * 120.00041 * 0.02562 * 17 16 15 19 19 C 1.47193 * 120.00022 * 180.02562 * 17 16 15 20 20 C 1.44421 * 123.46064 * 179.97438 * 19 17 16 21 21 C 1.32779 * 113.08175 * 179.97438 * 20 19 17 22 22 S 1.75502 * 110.57509 * 359.78245 * 21 20 19 23 23 C 1.36009 * 123.45592 * 359.97438 * 19 17 16 24 24 H 4.40639 * 5.51461 * 179.97438 * 4 1 2 25 25 H 1.08995 * 109.47589 * 216.44496 * 3 2 1 26 26 H 1.09005 * 109.47094 * 96.44504 * 3 2 1 27 27 H 0.96998 * 120.00394 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.47450 * 59.99951 * 15 13 4 29 29 H 1.09000 * 109.46947 * 299.99753 * 15 13 4 30 30 H 0.96996 * 120.00188 * 0.02562 * 16 15 13 31 31 H 1.07998 * 123.46015 * 0.02562 * 20 19 17 32 32 H 1.07996 * 124.71175 * 180.02562 * 21 20 19 33 33 H 1.07997 * 124.59801 * 359.97438 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2653 0.5519 5 6 3.4778 -1.3485 1.8767 6 1 4.0907 -2.1666 2.2255 7 6 3.0367 -0.3806 2.7706 8 7 1.9851 0.3518 2.4801 9 14 3.9388 -0.1202 4.3856 10 1 5.0066 0.8946 4.1982 11 1 2.9811 0.3536 5.4168 12 1 4.5460 -1.4020 4.8256 13 6 3.2477 -2.3480 -0.2427 14 8 3.6529 -3.3960 0.2141 15 6 2.8713 -2.2563 -1.6991 16 7 3.0825 -3.5563 -2.3408 17 6 2.8105 -3.7129 -3.6515 18 8 2.3901 -2.7747 -4.3017 19 6 3.0222 -5.0191 -4.2962 20 6 2.7553 -5.2702 -5.6931 21 6 3.0194 -6.5195 -6.0572 22 16 3.6171 -7.4465 -4.6920 23 6 3.4891 -6.1135 -3.6374 24 1 -1.0498 -0.0003 0.0003 25 1 3.0090 0.8274 0.6104 26 1 3.0093 0.1162 -1.0212 27 1 1.6774 1.0278 3.1040 28 1 3.4915 -1.5051 -2.1881 29 1 1.8221 -1.9739 -1.7861 30 1 3.4174 -4.3045 -1.8222 31 1 2.3804 -4.5187 -6.3722 32 1 2.8885 -6.9098 -7.0556 33 1 3.7485 -6.1340 -2.5892 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490976446.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:09 Heat of formation + Delta-G solvation = 34.266145 kcal Electronic energy + Delta-G solvation = -20071.014750 eV Core-core repulsion = 16805.005452 eV Total energy + Delta-G solvation = -3266.009298 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.067 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.83025 -38.62987 -36.77084 -35.45204 -34.01402 -32.21114 -31.32287 -30.21013 -27.68867 -26.41709 -25.01779 -24.05787 -21.31048 -19.65285 -19.06977 -18.17351 -17.91839 -17.13733 -16.64603 -15.87768 -15.32214 -15.23570 -14.78868 -14.36665 -14.22406 -13.88291 -13.19266 -13.14885 -13.09141 -12.67153 -12.54044 -12.43902 -12.07062 -11.81763 -11.64117 -11.25463 -11.08228 -10.56704 -10.41521 -9.80096 -9.42511 -9.38758 -9.19833 -9.00166 -8.84566 -8.64411 -8.51386 -8.00809 -6.43922 -3.97674 0.67858 1.40666 1.77877 1.96396 3.07920 3.19555 3.22924 3.34774 3.47745 3.58179 3.82374 4.00608 4.11360 4.66608 4.79994 4.95123 5.05256 5.16046 5.29200 5.39989 5.61643 5.69504 5.81209 5.95654 5.98372 6.16031 6.23438 6.60118 6.67002 6.97724 7.46369 7.77419 7.88722 8.27535 8.41723 8.76591 8.97831 9.21077 9.71190 10.56301 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.027389 B = 0.003530 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.063444 B = 7930.291722 C = 8708.246636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.119 4.119 3 C 0.227 3.773 4 N -0.428 5.428 5 C -0.320 4.320 6 H 0.107 0.893 7 C 0.034 3.966 8 N -0.856 5.856 9 Si 0.924 3.076 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.438 3.562 14 O -0.586 6.586 15 C 0.108 3.892 16 N -0.702 5.702 17 C 0.574 3.426 18 O -0.544 6.544 19 C -0.150 4.150 20 C -0.083 4.083 21 C -0.240 4.240 22 S 0.177 5.823 23 C -0.207 4.207 24 H 0.200 0.800 25 H 0.113 0.887 26 H 0.066 0.934 27 H 0.270 0.730 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.409 0.591 31 H 0.154 0.846 32 H 0.169 0.831 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.743 -8.580 -12.532 15.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.121 4.121 3 C 0.104 3.896 4 N -0.145 5.145 5 C -0.447 4.447 6 H 0.125 0.875 7 C -0.171 4.171 8 N -0.493 5.493 9 Si 0.751 3.249 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.226 3.774 14 O -0.472 6.472 15 C -0.019 4.019 16 N -0.356 5.356 17 C 0.359 3.641 18 O -0.424 6.424 19 C -0.168 4.168 20 C -0.112 4.112 21 C -0.375 4.375 22 S 0.442 5.558 23 C -0.345 4.345 24 H 0.217 0.783 25 H 0.131 0.869 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.247 0.753 31 H 0.172 0.828 32 H 0.186 0.814 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.037 -9.733 -12.440 15.926 hybrid contribution -0.398 1.545 1.122 1.950 sum 1.639 -8.188 -11.318 14.065 Atomic orbital electron populations 1.24299 0.95406 1.01721 1.05664 1.23061 0.94277 0.98866 0.95880 1.18341 0.84487 0.89645 0.97099 1.43644 1.54797 1.06873 1.09188 1.19701 1.30522 1.12207 0.82249 0.87545 1.25336 0.95009 0.97158 0.99627 1.70096 1.19308 1.22404 1.37502 0.85959 0.79141 0.78988 0.80845 1.20188 1.21021 1.19337 1.19866 0.85577 0.84405 0.87548 1.90489 1.52133 1.28703 1.75838 1.21096 1.02694 0.85376 0.92745 1.45594 1.66355 1.14319 1.09330 1.17548 0.77925 0.87094 0.81563 1.90774 1.46235 1.41510 1.63839 1.20356 1.07539 0.94364 0.94550 1.21150 0.99712 0.96522 0.93857 1.25489 1.10502 0.98102 1.03420 1.83006 1.61808 1.12450 0.98515 1.25802 1.05268 0.97964 1.05503 0.78275 0.86912 0.91616 0.91897 0.89752 0.89328 0.75305 0.82820 0.81396 0.80868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.22 19.25 29.55 0.57 -4.65 16 2 C -0.12 -2.65 10.88 -37.13 -0.40 -3.06 16 3 C 0.23 4.92 4.91 -6.83 -0.03 4.89 16 4 N -0.43 -10.43 2.60 -117.93 -0.31 -10.73 16 5 C -0.32 -8.47 9.33 -14.93 -0.14 -8.61 16 6 H 0.11 2.96 7.39 -52.48 -0.39 2.57 16 7 C 0.03 0.86 4.87 -17.47 -0.08 0.77 16 8 N -0.86 -21.80 9.48 55.50 0.53 -21.27 16 9 Si 0.92 19.80 29.60 -169.99 -5.03 14.77 16 10 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 12 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 13 C 0.44 10.20 7.63 -10.99 -0.08 10.12 16 14 O -0.59 -15.02 15.31 5.55 0.08 -14.93 16 15 C 0.11 2.10 4.76 -5.19 -0.02 2.07 16 16 N -0.70 -12.40 5.50 -62.63 -0.34 -12.75 16 17 C 0.57 9.85 7.79 -12.62 -0.10 9.75 16 18 O -0.54 -10.79 16.80 5.24 0.09 -10.71 16 19 C -0.15 -2.08 5.98 -104.63 -0.63 -2.71 16 20 C -0.08 -0.99 10.10 -39.02 -0.39 -1.38 16 21 C -0.24 -2.22 11.12 28.86 0.32 -1.90 16 22 S 0.18 1.58 23.02 -107.50 -2.48 -0.89 16 23 C -0.21 -2.40 10.38 29.93 0.31 -2.09 16 24 H 0.20 3.38 7.80 -54.10 -0.42 2.96 16 25 H 0.11 2.54 6.44 -51.93 -0.33 2.21 16 26 H 0.07 1.20 6.69 -51.93 -0.35 0.85 16 27 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 28 H 0.08 1.52 7.42 -51.93 -0.39 1.14 16 29 H 0.09 1.77 7.51 -51.93 -0.39 1.38 16 30 H 0.41 6.93 5.93 -40.82 -0.24 6.69 16 31 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.17 1.85 7.01 -52.49 -0.37 1.49 16 LS Contribution 311.23 15.07 4.69 4.69 Total: -1.00 -31.30 311.23 -6.31 -37.61 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -2.86 Total: 11.02 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -0.69 Total: 3.21 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -0.12 Total: -44.76 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: 0.17 Total: -25.64 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.48 Total: -0.89 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.30 -6.31 -37.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490976446.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.874 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds