Wall clock time and date at job start Tue Mar 31 2020 02:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47342 * 336.44835 * 3 2 1 5 5 C 1.37096 * 119.99814 * 264.13670 * 4 3 2 6 6 H 1.08004 * 120.00201 * 197.43367 * 5 4 3 7 7 C 1.38952 * 119.99950 * 17.44066 * 5 4 3 8 8 N 1.31409 * 120.00429 * 21.51646 * 7 5 4 9 9 Si 1.86802 * 119.99772 * 201.52265 * 7 5 4 10 10 H 1.48499 * 109.47601 * 89.99649 * 9 7 5 11 11 H 1.48500 * 109.47181 * 209.99940 * 9 7 5 12 12 H 1.48501 * 109.47177 * 329.99650 * 9 7 5 13 13 C 1.34774 * 119.99972 * 84.13769 * 4 3 2 14 14 O 1.21290 * 119.99858 * 179.97438 * 13 4 3 15 15 C 1.50698 * 120.00041 * 0.02562 * 13 4 3 16 16 N 1.46505 * 109.46921 * 179.97438 * 15 13 4 17 17 C 1.34777 * 119.99744 * 179.97438 * 16 15 13 18 18 O 1.21637 * 120.00041 * 0.02562 * 17 16 15 19 19 C 1.47193 * 120.00022 * 180.02562 * 17 16 15 20 20 C 1.44421 * 123.46064 * 179.97438 * 19 17 16 21 21 C 1.32779 * 113.08175 * 179.97438 * 20 19 17 22 22 S 1.75502 * 110.57509 * 359.78245 * 21 20 19 23 23 C 1.36009 * 123.45592 * 359.97438 * 19 17 16 24 24 H 4.40639 * 5.51461 * 179.97438 * 4 1 2 25 25 H 1.08995 * 109.47589 * 216.44496 * 3 2 1 26 26 H 1.09005 * 109.47094 * 96.44504 * 3 2 1 27 27 H 0.96998 * 120.00394 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.47450 * 59.99951 * 15 13 4 29 29 H 1.09000 * 109.46947 * 299.99753 * 15 13 4 30 30 H 0.96996 * 120.00188 * 0.02562 * 16 15 13 31 31 H 1.07998 * 123.46015 * 0.02562 * 20 19 17 32 32 H 1.07996 * 124.71175 * 180.02562 * 21 20 19 33 33 H 1.07997 * 124.59801 * 359.97438 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2653 0.5519 5 6 3.4778 -1.3485 1.8767 6 1 4.0907 -2.1666 2.2255 7 6 3.0367 -0.3806 2.7706 8 7 1.9851 0.3518 2.4801 9 14 3.9388 -0.1202 4.3856 10 1 5.0066 0.8946 4.1982 11 1 2.9811 0.3536 5.4168 12 1 4.5460 -1.4020 4.8256 13 6 3.2477 -2.3480 -0.2427 14 8 3.6529 -3.3960 0.2141 15 6 2.8713 -2.2563 -1.6991 16 7 3.0825 -3.5563 -2.3408 17 6 2.8105 -3.7129 -3.6515 18 8 2.3901 -2.7747 -4.3017 19 6 3.0222 -5.0191 -4.2962 20 6 2.7553 -5.2702 -5.6931 21 6 3.0194 -6.5195 -6.0572 22 16 3.6171 -7.4465 -4.6920 23 6 3.4891 -6.1135 -3.6374 24 1 -1.0498 -0.0003 0.0003 25 1 3.0090 0.8274 0.6104 26 1 3.0093 0.1162 -1.0212 27 1 1.6774 1.0278 3.1040 28 1 3.4915 -1.5051 -2.1881 29 1 1.8221 -1.9739 -1.7861 30 1 3.4174 -4.3045 -1.8222 31 1 2.3804 -4.5187 -6.3722 32 1 2.8885 -6.9098 -7.0556 33 1 3.7485 -6.1340 -2.5892 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490976446.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:08 Heat of formation + Delta-G solvation = 13.879798 kcal Electronic energy + Delta-G solvation = -20071.898768 eV Core-core repulsion = 16805.005452 eV Total energy + Delta-G solvation = -3266.893316 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.067 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.26789 -40.28745 -37.79438 -37.26452 -35.53608 -34.06234 -33.10256 -31.24066 -29.21322 -28.12505 -26.46461 -25.47847 -22.44386 -21.29048 -20.32001 -19.78067 -19.11636 -18.46457 -18.26245 -17.52219 -16.84591 -16.72523 -16.39482 -15.91591 -15.78117 -15.33434 -14.66037 -14.39891 -14.19380 -13.97888 -13.88043 -13.75788 -13.55375 -13.38359 -13.35964 -12.79942 -12.49176 -12.16841 -12.09529 -11.24050 -11.15607 -11.10377 -10.74035 -10.50984 -10.31136 -9.99731 -9.91589 -9.35502 -8.36191 -5.98146 -0.24200 0.61798 0.96211 0.99307 1.34642 1.44025 1.54402 1.74552 1.93050 2.17228 2.27703 2.30842 2.36132 2.99972 3.07847 3.75835 3.82510 3.88598 3.97167 4.26604 4.32749 4.36738 4.46015 4.61807 4.84961 4.91345 5.12924 5.16406 5.29242 5.37617 5.44767 5.97031 6.33658 6.43220 7.04286 7.06139 7.09795 7.31628 7.82461 8.62103 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.027389 B = 0.003530 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.063444 B = 7930.291722 C = 8708.246636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.159 4.159 3 C 0.229 3.771 4 N -0.438 5.438 5 C -0.355 4.355 6 H 0.083 0.917 7 C 0.006 3.994 8 N -0.868 5.868 9 Si 0.988 3.012 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.275 1.275 13 C 0.433 3.567 14 O -0.617 6.617 15 C 0.123 3.877 16 N -0.704 5.704 17 C 0.574 3.426 18 O -0.578 6.578 19 C -0.181 4.181 20 C -0.108 4.108 21 C -0.228 4.228 22 S 0.250 5.750 23 C -0.217 4.217 24 H 0.233 0.767 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.274 0.726 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.412 0.588 31 H 0.150 0.850 32 H 0.202 0.798 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.724 -9.638 -13.340 16.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.160 4.160 3 C 0.107 3.893 4 N -0.155 5.155 5 C -0.482 4.482 6 H 0.100 0.900 7 C -0.198 4.198 8 N -0.504 5.504 9 Si 0.811 3.189 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.200 1.200 13 C 0.222 3.778 14 O -0.504 6.504 15 C -0.005 4.005 16 N -0.358 5.358 17 C 0.361 3.639 18 O -0.460 6.460 19 C -0.200 4.200 20 C -0.136 4.136 21 C -0.362 4.362 22 S 0.516 5.484 23 C -0.355 4.355 24 H 0.249 0.751 25 H 0.118 0.882 26 H 0.114 0.886 27 H 0.084 0.916 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.250 0.750 31 H 0.168 0.832 32 H 0.219 0.781 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.012 -10.787 -13.268 17.218 hybrid contribution -0.420 1.753 1.344 2.248 sum 1.592 -9.034 -11.924 15.045 Atomic orbital electron populations 1.25168 0.96415 1.00099 1.04221 1.23391 0.94992 1.00351 0.97262 1.18397 0.84685 0.87974 0.98273 1.43805 1.54810 1.08036 1.08822 1.19643 1.31928 1.12814 0.83815 0.89958 1.26024 0.95242 0.96267 1.02303 1.70184 1.19545 1.22215 1.38417 0.85024 0.78185 0.78624 0.77030 1.18933 1.20452 1.20017 1.20446 0.84644 0.83792 0.88925 1.90452 1.53337 1.29785 1.76864 1.20863 1.02478 0.86863 0.90281 1.45600 1.66734 1.13678 1.09755 1.18065 0.76737 0.88160 0.80920 1.90738 1.47887 1.43001 1.64360 1.20221 1.10684 0.93309 0.95752 1.21151 1.01647 0.97827 0.93025 1.25910 1.08134 0.97101 1.05098 1.82819 1.59318 1.09705 0.96576 1.26030 1.04235 0.98872 1.06399 0.75055 0.88230 0.88588 0.91588 0.88356 0.89758 0.74975 0.83226 0.78116 0.80610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.71 19.25 74.32 1.43 -8.28 16 2 C -0.16 -7.02 10.88 31.12 0.34 -6.68 16 3 C 0.23 10.01 4.91 84.57 0.42 10.42 16 4 N -0.44 -21.83 2.60 -645.42 -1.68 -23.51 16 5 C -0.35 -19.29 9.33 84.04 0.78 -18.51 16 6 H 0.08 4.77 7.39 -2.91 -0.02 4.75 16 7 C 0.01 0.31 4.87 84.93 0.41 0.72 16 8 N -0.87 -44.08 9.48 21.66 0.21 -43.88 16 9 Si 0.99 40.67 29.60 68.60 2.03 42.70 16 10 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 11 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 12 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 13 C 0.43 20.68 7.63 87.66 0.67 21.35 16 14 O -0.62 -32.62 15.31 -3.06 -0.05 -32.66 16 15 C 0.12 4.84 4.76 85.63 0.41 5.25 16 16 N -0.70 -25.34 5.50 -470.32 -2.59 -27.93 16 17 C 0.57 20.03 7.79 86.60 0.67 20.70 16 18 O -0.58 -23.41 16.80 -4.15 -0.07 -23.48 16 19 C -0.18 -4.97 5.98 -19.87 -0.12 -5.09 16 20 C -0.11 -2.45 10.10 22.67 0.23 -2.22 16 21 C -0.23 -3.54 11.12 66.64 0.74 -2.79 16 22 S 0.25 3.70 23.02 -56.49 -1.30 2.39 16 23 C -0.22 -4.77 10.38 67.30 0.70 -4.07 16 24 H 0.23 7.32 7.80 -4.43 -0.03 7.29 16 25 H 0.10 4.56 6.44 -2.39 -0.02 4.55 16 26 H 0.10 3.49 6.69 -2.38 -0.02 3.47 16 27 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 28 H 0.10 3.57 7.42 -2.39 -0.02 3.56 16 29 H 0.08 3.41 7.51 -2.39 -0.02 3.40 16 30 H 0.41 14.30 5.93 -92.71 -0.55 13.75 16 31 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 32 H 0.20 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.18 3.66 7.01 -2.91 -0.02 3.64 16 Total: -1.00 -68.50 311.23 3.85 -64.65 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.61 Total: 30.90 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 6.68 Total: 10.81 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -4.06 Total: -95.31 kcal Atomic # 8 Polarization: -56.02 SS G_CDS: -0.12 Total: -56.14 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.30 Total: 2.39 kcal Total: -68.50 3.85 -64.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490976446.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.533 kcal (2) G-P(sol) polarization free energy of solvation -68.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds