Wall clock time and date at job start Tue Mar 31 2020 03:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34638 * 116.99819 * 2 1 4 4 O 1.21513 * 120.00208 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99834 * 179.72501 * 3 2 1 6 6 C 1.47067 * 136.05683 * 359.91490 * 5 3 2 7 7 C 1.53752 * 87.88704 * 152.95865 * 6 5 3 8 8 N 1.46504 * 114.39256 * 272.67069 * 7 6 5 9 9 S 1.65603 * 119.99962 * 238.58604 * 8 7 6 10 10 O 1.42104 * 104.27589 * 181.07280 * 9 8 7 11 11 O 1.42098 * 104.28081 * 308.93096 * 9 8 7 12 12 C 1.81398 * 104.44853 * 65.00368 * 9 8 7 13 13 C 1.52997 * 109.47243 * 179.97438 * 12 9 8 14 14 C 1.50696 * 109.47385 * 179.97438 * 13 12 9 15 15 H 1.08005 * 120.00234 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00285 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99617 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00011 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46846 * 90.00274 * 18 16 14 20 20 H 1.48503 * 109.46956 * 210.00050 * 18 16 14 21 21 H 1.48496 * 109.47195 * 329.99974 * 18 16 14 22 22 C 1.47062 * 136.05657 * 180.27266 * 5 3 2 23 23 H 1.09003 * 109.47240 * 299.99654 * 1 2 3 24 24 H 1.08997 * 109.47282 * 59.99663 * 1 2 3 25 25 H 1.08999 * 109.46798 * 179.97438 * 1 2 3 26 26 H 1.09007 * 113.46523 * 267.69131 * 6 5 3 27 27 H 1.09001 * 113.47129 * 38.12710 * 6 5 3 28 28 H 1.09011 * 114.26601 * 139.79304 * 7 6 5 29 29 H 0.96998 * 120.00005 * 58.59309 * 8 7 6 30 30 H 1.08997 * 109.47029 * 299.99765 * 12 9 8 31 31 H 1.09005 * 109.47491 * 59.99788 * 12 9 8 32 32 H 1.09007 * 109.47107 * 299.99867 * 13 12 9 33 33 H 1.09004 * 109.47349 * 59.99947 * 13 12 9 34 34 H 0.97003 * 119.99562 * 179.97438 * 17 16 14 35 35 H 1.09000 * 113.47409 * 321.87078 * 22 5 3 36 36 H 1.09006 * 113.46707 * 92.25431 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2188 0.0005 5 7 3.4091 1.2702 0.0056 6 6 4.5200 0.3065 0.0140 7 6 5.3770 1.3748 -0.6848 8 7 5.2741 1.3723 -2.1462 9 16 6.6297 1.1516 -3.0713 10 8 6.1581 1.2336 -4.4093 11 8 7.5591 2.0986 -2.5628 12 6 7.1686 -0.5377 -2.6889 13 6 8.4288 -0.8653 -3.4923 14 6 8.8768 -2.2685 -3.1742 15 1 8.3189 -2.8668 -2.4690 16 6 9.9991 -2.7887 -3.7832 17 7 10.6782 -2.0604 -4.6423 18 14 10.5549 -4.5278 -3.3882 19 1 9.9083 -5.4794 -4.3273 20 1 12.0304 -4.6197 -3.5282 21 1 10.1678 -4.8668 -1.9953 22 6 4.4131 2.3448 0.0124 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 4.8699 0.0561 1.0155 27 1 4.3352 -0.5744 -0.6009 28 1 6.4047 1.4302 -0.3253 29 1 4.4119 1.5000 -2.5719 30 1 7.3855 -0.6175 -1.6237 31 1 6.3775 -1.2399 -2.9521 32 1 8.2114 -0.7857 -4.5576 33 1 9.2201 -0.1632 -3.2295 34 1 11.4680 -2.4263 -5.0705 35 1 4.1374 3.2005 -0.6038 36 1 4.7342 2.6325 1.0136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492392773.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:05 Heat of formation + Delta-G solvation = -143.334700 kcal Electronic energy + Delta-G solvation = -21460.690049 eV Core-core repulsion = 17879.670480 eV Total energy + Delta-G solvation = -3581.019568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.097 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.79435 -40.18511 -38.11508 -37.30141 -36.98042 -35.83165 -34.56649 -33.06305 -30.48094 -27.97648 -27.55046 -26.96179 -23.53887 -23.38156 -21.18730 -20.42165 -19.26507 -18.91633 -18.32635 -18.12961 -17.62429 -17.29543 -16.97393 -16.48814 -16.27090 -15.67174 -15.35603 -15.07146 -14.80760 -14.43479 -14.14783 -13.92579 -13.66482 -13.23794 -13.17420 -13.05683 -12.96542 -12.89397 -12.84009 -12.72283 -12.28242 -12.16674 -12.07025 -11.83079 -11.72809 -11.66770 -11.12780 -10.59737 -10.41171 -9.93972 -8.21209 -6.34282 -0.67139 0.96797 1.45588 1.46470 1.57483 1.66433 1.80748 2.42192 2.83341 2.85906 3.13106 3.22465 3.37251 3.80909 3.95440 4.17167 4.23917 4.28606 4.30659 4.33994 4.35834 4.59676 4.65318 4.68724 4.80017 4.85700 5.18397 5.26866 5.35009 5.37070 5.74460 5.96229 6.11967 6.54037 6.80510 7.11117 7.36006 8.90939 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020602 B = 0.003744 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.752093 B = 7476.911329 C = 8259.587912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.374 6.374 3 C 0.668 3.332 4 O -0.613 6.613 5 N -0.638 5.638 6 C 0.088 3.912 7 C 0.104 3.896 8 N -1.091 6.091 9 S 2.621 3.379 10 O -1.004 7.004 11 O -0.989 6.989 12 C -0.582 4.582 13 C 0.017 3.983 14 C -0.534 4.534 15 H 0.080 0.920 16 C -0.005 4.005 17 N -0.936 5.936 18 Si 0.971 3.029 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.254 1.254 22 C 0.119 3.881 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.135 0.865 26 H 0.139 0.861 27 H 0.094 0.906 28 H 0.161 0.839 29 H 0.420 0.580 30 H 0.156 0.844 31 H 0.143 0.857 32 H 0.002 0.998 33 H 0.011 0.989 34 H 0.266 0.734 35 H 0.079 0.921 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.742 2.561 13.940 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.287 6.287 3 C 0.424 3.576 4 O -0.505 6.505 5 N -0.380 5.380 6 C -0.035 4.035 7 C -0.005 4.005 8 N -0.848 5.848 9 S 2.718 3.282 10 O -0.994 6.994 11 O -0.978 6.978 12 C -0.715 4.715 13 C -0.022 4.022 14 C -0.573 4.573 15 H 0.098 0.902 16 C -0.203 4.203 17 N -0.576 5.576 18 Si 0.795 3.205 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.178 1.178 22 C -0.003 4.003 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.153 0.847 26 H 0.157 0.843 27 H 0.112 0.888 28 H 0.178 0.822 29 H 0.255 0.745 30 H 0.174 0.826 31 H 0.161 0.839 32 H 0.020 0.980 33 H 0.029 0.971 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.583 3.483 13.316 20.791 hybrid contribution -0.308 -1.008 -0.273 1.088 sum -15.890 2.476 13.043 20.707 Atomic orbital electron populations 1.23485 0.72862 1.05548 1.02480 1.86269 1.25616 1.30059 1.86743 1.17624 0.81899 0.82090 0.75997 1.90974 1.64585 1.36453 1.58495 1.48336 1.00239 1.14597 1.74873 1.24059 0.81360 0.94469 1.03651 1.22393 1.01909 0.97185 0.79035 1.55209 1.25678 1.88997 1.14955 1.04544 0.73068 0.77926 0.72618 1.93513 1.80274 1.87988 1.37627 1.93519 1.63989 1.59692 1.80644 1.30331 1.08509 1.20750 1.11925 1.18843 0.90855 0.98359 0.94101 1.21547 1.10995 0.98999 1.25738 0.90186 1.26095 0.96780 1.02675 0.94778 1.70105 1.18877 1.39164 1.29431 0.85353 0.77093 0.78615 0.79425 1.20050 1.21243 1.17752 1.23695 0.81747 0.91607 1.03270 0.91893 0.92353 0.84725 0.84333 0.88755 0.82167 0.74509 0.82596 0.83912 0.97965 0.97105 0.92568 0.90293 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.73 10.56 113.37 1.20 1.93 16 2 O -0.37 -7.86 10.59 -55.48 -0.59 -8.45 16 3 C 0.67 16.39 8.96 129.79 1.16 17.56 16 4 O -0.61 -19.08 16.91 19.80 0.33 -18.75 16 5 N -0.64 -11.75 3.69 -988.42 -3.64 -15.39 16 6 C 0.09 1.05 8.48 83.26 0.71 1.76 16 7 C 0.10 1.49 4.66 45.55 0.21 1.70 16 8 N -1.09 -22.83 5.72 -168.50 -0.96 -23.79 16 9 S 2.62 82.23 5.43 -56.49 -0.31 81.92 16 10 O -1.00 -39.96 18.08 -127.65 -2.31 -42.27 16 11 O -0.99 -36.25 17.61 -127.65 -2.25 -38.50 16 12 C -0.58 -18.84 6.01 71.98 0.43 -18.40 16 13 C 0.02 0.84 4.98 29.85 0.15 0.99 16 14 C -0.53 -27.81 9.11 25.60 0.23 -27.57 16 15 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 16 C -0.01 -0.28 5.46 84.66 0.46 0.19 16 17 N -0.94 -55.45 13.29 21.45 0.28 -55.17 16 18 Si 0.97 41.61 29.54 68.60 2.03 43.64 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 20 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16 21 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 22 C 0.12 1.69 8.41 83.18 0.70 2.39 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.14 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.16 1.64 7.81 -2.38 -0.02 1.63 16 29 H 0.42 8.54 8.91 -96.75 -0.86 7.67 16 30 H 0.16 3.89 8.14 -2.39 -0.02 3.87 16 31 H 0.14 4.03 8.14 -2.39 -0.02 4.01 16 32 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 33 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.14 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -83.32 331.13 -1.92 -85.25 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.23 Total: 10.98 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: 5.25 Total: -19.46 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -4.32 Total: -94.35 kcal Atomic # 8 Polarization: -103.16 SS G_CDS: -4.81 Total: -107.97 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 16 Polarization: 82.23 SS G_CDS: -0.31 Total: 81.92 kcal Total: -83.32 -1.92 -85.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492392773.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.088 kcal (2) G-P(sol) polarization free energy of solvation -83.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds