Wall clock time and date at job start Tue Mar 31 2020 02:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.32242 * 120.35726 * 2 1 4 4 N 1.28743 * 120.47808 * 180.02562 * 3 2 1 5 5 C 1.32735 * 121.24346 * 0.02562 * 4 3 2 6 6 S 1.76196 * 119.65509 * 179.97438 * 5 4 3 7 7 C 1.76196 * 100.00072 * 0.02562 * 6 5 4 8 8 N 1.32312 * 126.25064 * 0.02562 * 7 6 5 9 9 N 1.28520 * 110.20256 * 179.97438 * 8 7 6 10 10 C 1.33109 * 109.73386 * 359.97438 * 9 8 7 11 11 C 1.39784 * 126.56765 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00139 * 186.21559 * 11 10 9 13 13 C 1.40084 * 120.00138 * 6.21634 * 11 10 9 14 14 N 1.30813 * 120.00037 * 6.44725 * 13 11 10 15 15 Si 1.86802 * 120.00401 * 186.44440 * 13 11 10 16 16 H 1.48499 * 109.47321 * 265.01616 * 15 13 11 17 17 H 1.48508 * 109.46664 * 25.01554 * 15 13 11 18 18 H 1.48500 * 109.47127 * 145.01035 * 15 13 11 19 19 N 1.36664 * 126.25090 * 180.27210 * 7 6 5 20 20 C 1.46499 * 127.15117 * 0.02562 * 19 7 6 21 21 N 1.32733 * 120.69008 * 0.27270 * 5 4 3 22 22 C 1.32388 * 119.46347 * 359.45317 * 21 5 4 23 23 C 1.50696 * 120.58418 * 180.26204 * 22 21 5 24 24 H 1.08999 * 109.47063 * 89.99666 * 1 2 3 25 25 H 1.08996 * 109.47132 * 210.00163 * 1 2 3 26 26 H 1.09001 * 109.46941 * 330.00008 * 1 2 3 27 27 H 0.96996 * 120.00149 * 180.02562 * 14 13 11 28 28 H 1.09000 * 109.47462 * 270.15094 * 20 19 7 29 29 H 1.08998 * 109.47040 * 30.15823 * 20 19 7 30 30 H 1.08999 * 109.46885 * 150.15537 * 20 19 7 31 31 H 1.09001 * 109.47750 * 270.28072 * 23 22 21 32 32 H 1.09005 * 109.47022 * 30.27998 * 23 22 21 33 33 H 1.08995 * 109.47292 * 150.27400 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1753 1.1411 0.0000 4 7 3.4627 1.1438 -0.0005 5 6 4.1536 0.0104 -0.0015 6 16 5.9147 0.0630 -0.0029 7 6 6.1688 1.8065 -0.0015 8 7 5.2258 2.7346 0.0005 9 7 5.7555 3.9056 0.0015 10 6 7.0823 3.7987 0.0008 11 6 8.0025 4.8509 0.0009 12 1 9.0579 4.6453 -0.1010 13 6 7.5559 6.1720 0.1334 14 7 6.2949 6.4142 0.3830 15 14 8.7611 7.5879 -0.0463 16 1 9.2519 7.9935 1.2953 17 1 9.9092 7.1573 -0.8841 18 1 8.0804 8.7383 -0.6931 19 7 7.3759 2.4473 -0.0071 20 6 8.7048 1.8307 -0.0159 21 7 3.5315 -1.1621 -0.0075 22 6 2.2081 -1.1972 -0.0015 23 6 1.4761 -2.5144 -0.0021 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 5.9856 7.3290 0.4743 28 1 9.0392 1.6733 1.0096 29 1 8.6575 0.8728 -0.5338 30 1 9.4066 2.4874 -0.5300 31 1 1.2991 -2.8314 -1.0299 32 1 2.0777 -3.2647 0.5110 33 1 0.5219 -2.4001 0.5122 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530430438.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:41 Heat of formation + Delta-G solvation = 128.959044 kcal Electronic energy + Delta-G solvation = -20200.285545 eV Core-core repulsion = 17002.967941 eV Total energy + Delta-G solvation = -3197.317604 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.080 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.76951 -42.46313 -36.44662 -35.71662 -35.58270 -35.11808 -31.39812 -30.31023 -29.73753 -28.19333 -27.36112 -24.88346 -24.72637 -22.84826 -22.40972 -20.05481 -19.37144 -19.04621 -17.41166 -17.16231 -16.73198 -16.50116 -16.24185 -15.84893 -15.07260 -14.62295 -14.40203 -14.05447 -13.97214 -13.89571 -13.82784 -13.32564 -13.21227 -12.98248 -12.95483 -12.77990 -12.73176 -12.41588 -12.07310 -11.97969 -11.59302 -11.41026 -11.17226 -10.52630 -10.34801 -10.22396 -10.21012 -8.75165 -8.56779 -6.62055 -0.56056 -0.38855 -0.13010 0.63663 1.17532 1.41575 1.59019 1.61861 2.17689 2.29317 2.48337 2.49300 2.66259 3.01178 3.29880 3.35104 3.76491 3.90521 4.05863 4.45755 4.52995 4.60831 4.61954 4.66923 4.79566 4.90670 4.96292 4.96749 5.05707 5.30971 5.36402 5.53742 5.73185 6.03621 6.22181 6.73910 6.92042 7.40962 8.39839 8.68352 Molecular weight = 292.08amu Principal moments of inertia in cm(-1) A = 0.028468 B = 0.004176 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.324141 B = 6703.511301 C = 7654.176301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.005 3.995 3 N -0.233 5.233 4 N -0.256 5.256 5 C 0.173 3.827 6 S 0.277 5.723 7 C -0.012 4.012 8 N -0.253 5.253 9 N -0.395 5.395 10 C 0.324 3.676 11 C -0.469 4.469 12 H 0.108 0.892 13 C 0.029 3.971 14 N -0.787 5.787 15 Si 1.009 2.991 16 H -0.259 1.259 17 H -0.245 1.245 18 H -0.273 1.273 19 N -0.520 5.520 20 C 0.088 3.912 21 N -0.467 5.467 22 C 0.161 3.839 23 C -0.100 4.100 24 H 0.105 0.895 25 H 0.126 0.874 26 H 0.076 0.924 27 H 0.285 0.715 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.652 -16.683 -0.775 17.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.150 4.150 3 N -0.081 5.081 4 N -0.104 5.104 5 C -0.205 4.205 6 S 0.508 5.492 7 C -0.384 4.384 8 N -0.098 5.098 9 N -0.244 5.244 10 C 0.079 3.921 11 C -0.509 4.509 12 H 0.126 0.874 13 C -0.192 4.192 14 N -0.412 5.412 15 Si 0.828 3.172 16 H -0.184 1.184 17 H -0.168 1.168 18 H -0.198 1.198 19 N -0.223 5.223 20 C -0.054 4.054 21 N -0.191 5.191 22 C -0.002 4.002 23 C -0.157 4.157 24 H 0.124 0.876 25 H 0.144 0.856 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.134 0.866 32 H 0.112 0.888 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.700 -15.877 -0.742 16.575 hybrid contribution 0.423 0.858 0.003 0.956 sum -4.278 -15.020 -0.739 15.635 Atomic orbital electron populations 1.20931 0.82767 1.05956 1.05449 1.24458 1.02698 0.91047 0.96775 1.73756 1.01403 1.26825 1.06118 1.75269 1.00656 1.23146 1.11335 1.26861 1.04133 0.90016 0.99459 1.82572 0.88970 0.90326 1.87346 1.26360 0.86838 1.00773 1.24472 1.74996 1.25990 0.95571 1.13199 1.75438 1.05024 1.12485 1.31425 1.22115 0.93012 0.82082 0.94895 1.18690 0.94016 0.89142 1.49074 0.87423 1.27058 0.97708 1.02743 0.91676 1.70160 1.17625 1.23132 1.30279 0.84810 0.77619 0.75137 0.79672 1.18361 1.16841 1.19755 1.46333 1.06118 1.05692 1.64139 1.21945 0.80694 0.99129 1.03644 1.68963 1.10985 1.25393 1.13770 1.23520 0.89225 0.99445 0.87966 1.21138 1.00455 0.87867 1.06200 0.87626 0.85581 0.90511 0.90454 0.90480 0.88924 0.88874 0.86581 0.88751 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.46 9.83 71.23 0.70 -0.76 16 2 C 0.00 0.14 6.87 42.62 0.29 0.43 16 3 N -0.23 -9.89 11.56 -47.40 -0.55 -10.44 16 4 N -0.26 -12.49 8.35 -58.32 -0.49 -12.98 16 5 C 0.17 7.25 7.90 180.32 1.43 8.67 16 6 S 0.28 10.78 22.19 -56.49 -1.25 9.52 16 7 C -0.01 -0.63 8.04 179.20 1.44 0.81 16 8 N -0.25 -15.54 9.33 -56.22 -0.52 -16.07 16 9 N -0.40 -26.07 10.56 -55.04 -0.58 -26.66 16 10 C 0.32 19.11 7.50 133.25 1.00 20.11 16 11 C -0.47 -25.53 9.05 23.09 0.21 -25.32 16 12 H 0.11 5.10 7.26 -2.91 -0.02 5.08 16 13 C 0.03 1.54 5.49 85.29 0.47 2.01 16 14 N -0.79 -46.12 12.00 21.86 0.26 -45.86 16 15 Si 1.01 38.38 29.57 68.60 2.03 40.41 16 16 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 17 H -0.25 -8.59 7.11 99.48 0.71 -7.88 16 18 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 19 N -0.52 -25.88 3.26 -543.74 -1.77 -27.65 16 20 C 0.09 3.05 10.89 127.77 1.39 4.45 16 21 N -0.47 -15.62 10.45 -184.10 -1.92 -17.54 16 22 C 0.16 4.10 6.82 42.60 0.29 4.39 16 23 C -0.10 -1.09 9.84 71.23 0.70 -0.39 16 24 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.13 0.85 6.06 -2.39 -0.01 0.84 16 26 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.29 15.08 8.30 -92.71 -0.77 14.31 16 28 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.09 2.63 7.85 -2.39 -0.02 2.61 16 30 H 0.09 2.97 7.48 -2.39 -0.02 2.96 16 31 H 0.12 0.84 8.14 -2.39 -0.02 0.83 16 32 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.12 0.52 6.06 -2.39 -0.01 0.51 16 Total: -1.00 -90.06 304.54 4.29 -85.77 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: 1.17 Total: 7.10 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 7.92 Total: 14.38 kcal Atomic # 7 Polarization: -151.61 SS G_CDS: -5.57 Total: -157.18 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Atomic # 16 Polarization: 10.78 SS G_CDS: -1.25 Total: 9.52 kcal Total: -90.06 4.29 -85.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530430438.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.730 kcal (2) G-P(sol) polarization free energy of solvation -90.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds