Wall clock time and date at job start Tue Mar 31 2020 03:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99998 * 2 1 4 4 C 1.50694 * 109.47075 * 274.99691 * 3 2 1 5 5 H 1.08012 * 120.00187 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00508 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99397 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00369 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47364 * 90.00008 * 8 6 4 10 10 H 1.48510 * 109.46835 * 209.99749 * 8 6 4 11 11 H 1.48498 * 109.47347 * 329.99319 * 8 6 4 12 12 S 1.65596 * 120.00021 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.40310 * 156.46054 * 12 2 1 14 14 O 1.42108 * 106.40218 * 23.54337 * 12 2 1 15 15 N 1.65598 * 107.22187 * 270.00581 * 12 2 1 16 16 C 1.46497 * 120.00148 * 64.99759 * 15 12 2 17 17 H 1.09005 * 109.47350 * 335.00022 * 16 15 12 18 18 C 1.50697 * 109.47324 * 95.00211 * 16 15 12 19 19 O 1.20825 * 119.99647 * 0.02562 * 18 16 15 20 20 O 1.34232 * 120.00255 * 180.02562 * 18 16 15 21 21 C 1.53003 * 109.47207 * 215.00417 * 16 15 12 22 22 C 1.53001 * 117.51964 * 111.28336 * 21 16 15 23 23 C 1.52999 * 60.00190 * 107.47982 * 22 21 16 24 24 H 1.08996 * 109.47742 * 270.00275 * 1 2 3 25 25 H 1.09001 * 109.46831 * 30.00380 * 1 2 3 26 26 H 1.08996 * 109.47102 * 150.00232 * 1 2 3 27 27 H 1.09000 * 109.47133 * 34.99876 * 3 2 1 28 28 H 1.09000 * 109.46905 * 154.99584 * 3 2 1 29 29 H 0.97003 * 119.99902 * 179.97438 * 7 6 4 30 30 H 0.97001 * 119.99753 * 245.00367 * 15 12 2 31 31 H 0.96703 * 117.00052 * 179.97438 * 20 18 16 32 32 H 1.09002 * 115.54973 * 325.58120 * 21 16 15 33 33 H 1.09001 * 117.49733 * 214.97413 * 22 21 16 34 34 H 1.08995 * 117.49577 * 359.97438 * 22 21 16 35 35 H 1.09004 * 117.50150 * 252.51496 * 23 22 21 36 36 H 1.09004 * 117.49681 * 107.48417 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3415 1.7656 -1.4154 5 1 1.9283 1.1938 -2.2332 6 6 3.0007 2.9502 -1.6665 7 7 3.5034 3.6468 -0.6707 8 14 3.1785 3.5665 -3.4209 9 1 2.0182 4.4278 -3.7631 10 1 4.4322 4.3529 -3.5446 11 1 3.2268 2.4088 -4.3497 12 16 2.2930 -1.4341 0.0006 13 8 3.5760 -1.1570 -0.5439 14 8 1.4113 -2.4067 -0.5435 15 7 2.5380 -1.8581 1.5826 16 6 1.3945 -2.1769 2.4410 17 1 0.5030 -1.6802 2.0581 18 6 1.1740 -3.6676 2.4509 19 8 1.8980 -4.3897 1.8073 20 8 0.1732 -4.1933 3.1747 21 6 1.6755 -1.6934 3.8652 22 6 0.8456 -0.5201 4.3901 23 6 0.5926 -1.9333 4.9192 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6502 2.0043 0.5894 28 1 3.1858 1.1177 0.4344 29 1 3.9675 4.4801 -0.8474 30 1 3.4387 -1.8952 1.9408 31 1 0.0709 -5.1545 3.1494 32 1 2.7148 -1.7588 4.1874 33 1 1.3389 0.1864 5.0576 34 1 0.0995 -0.0921 3.7207 35 1 -0.3201 -2.4352 4.5979 36 1 0.9196 -2.1564 5.9349 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547578668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:33 Heat of formation + Delta-G solvation = -135.003736 kcal Electronic energy + Delta-G solvation = -22662.827515 eV Core-core repulsion = 19082.169204 eV Total energy + Delta-G solvation = -3580.658311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.097 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.48454 -37.75215 -36.64902 -36.23655 -35.55859 -35.18897 -34.10384 -32.45730 -27.90825 -27.72370 -25.11591 -22.93328 -22.36751 -22.31974 -20.86155 -19.10086 -18.19352 -17.40043 -17.17352 -16.59300 -16.41133 -16.14885 -15.64864 -15.20826 -14.63977 -14.28091 -14.06494 -13.53254 -13.34655 -13.11429 -12.38753 -12.22749 -12.13604 -11.70416 -11.64044 -11.63300 -11.45961 -11.36478 -11.19645 -11.10477 -11.08334 -10.74239 -10.64507 -10.51366 -10.29982 -10.04363 -9.79643 -9.58129 -8.45990 -8.13590 -6.08016 -4.11941 1.09406 2.14994 2.82088 3.27220 3.31254 3.37813 3.44242 3.77042 4.09064 4.31050 4.44276 4.63678 4.71378 4.74548 4.95120 5.08204 5.21929 5.27551 5.53436 5.58606 5.72439 5.76541 5.86678 5.95667 6.00996 6.21907 6.42025 6.49892 6.94171 7.20758 7.36593 7.55756 7.84590 7.89473 8.18224 8.90420 9.53515 11.00631 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024966 B = 0.005152 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.243050 B = 5433.763574 C = 5977.020332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.994 5.994 3 C 0.257 3.743 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.778 3.222 13 O -0.955 6.955 14 O -0.989 6.989 15 N -1.109 6.109 16 C 0.205 3.795 17 H 0.120 0.880 18 C 0.465 3.535 19 O -0.495 6.495 20 O -0.514 6.514 21 C -0.167 4.167 22 C -0.163 4.163 23 C -0.165 4.165 24 H 0.038 0.962 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.264 0.736 30 H 0.419 0.581 31 H 0.406 0.594 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.825 -10.199 13.055 18.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.838 5.838 3 C 0.135 3.865 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 S 2.786 3.214 13 O -0.938 6.938 14 O -0.973 6.973 15 N -0.865 5.865 16 C 0.094 3.906 17 H 0.137 0.863 18 C 0.304 3.696 19 O -0.381 6.381 20 O -0.326 6.326 21 C -0.187 4.187 22 C -0.200 4.200 23 C -0.203 4.203 24 H 0.056 0.944 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.253 0.747 31 H 0.265 0.735 32 H 0.136 0.864 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.361 -10.292 12.060 17.480 hybrid contribution 0.458 -0.008 -0.506 0.683 sum -6.903 -10.300 11.554 16.948 Atomic orbital electron populations 1.21434 0.80241 1.03911 1.00055 1.57655 1.14246 1.23376 1.88476 1.19082 0.91067 0.78551 0.97757 1.21495 1.36189 1.06363 0.92936 0.92150 1.24922 0.95040 0.96488 0.97513 1.69916 1.37283 1.15316 1.30949 0.86508 0.77536 0.78845 0.84651 1.20599 1.21038 1.19689 1.02182 0.73725 0.72895 0.72631 1.93656 1.40530 1.84823 1.74838 1.93551 1.67486 1.59870 1.76347 1.56291 1.13665 1.84315 1.32211 1.19601 0.91213 0.87458 0.92326 0.86280 1.24093 0.77419 0.92742 0.75391 1.90727 1.45573 1.61958 1.39817 1.84535 1.51415 1.30239 1.66363 1.22341 0.98758 1.05830 0.91789 1.23124 1.02210 0.91291 1.03394 1.23106 1.00014 0.99292 0.97894 0.94400 0.89932 0.91482 0.94511 0.94321 0.92673 0.74690 0.73479 0.86351 0.88017 0.88002 0.87222 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.46 10.09 59.85 0.60 2.06 16 2 N -0.99 -19.99 3.23 -123.05 -0.40 -20.38 16 3 C 0.26 6.27 5.08 -5.19 -0.03 6.25 16 4 C -0.53 -14.74 9.38 -34.44 -0.32 -15.07 16 5 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -25.80 13.29 55.43 0.74 -25.07 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 S 2.78 56.05 6.01 -107.50 -0.65 55.41 16 13 O -0.95 -23.25 17.11 -57.17 -0.98 -24.23 16 14 O -0.99 -21.29 16.50 -57.17 -0.94 -22.23 16 15 N -1.11 -17.02 5.02 -5.88 -0.03 -17.05 16 16 C 0.21 2.61 2.94 -69.08 -0.20 2.40 16 17 H 0.12 1.41 6.37 -51.93 -0.33 1.08 16 18 C 0.47 6.18 7.68 36.00 0.28 6.45 16 19 O -0.50 -8.43 17.19 -18.75 -0.32 -8.75 16 20 O -0.51 -4.70 11.37 -39.26 -0.45 -5.15 16 21 C -0.17 -1.66 5.37 -90.61 -0.49 -2.15 16 22 C -0.16 -1.45 10.18 -26.73 -0.27 -1.72 16 23 C -0.17 -1.31 9.45 -26.73 -0.25 -1.57 16 24 H 0.04 0.47 7.41 -51.93 -0.38 0.09 16 25 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 26 H 0.07 1.04 7.02 -51.93 -0.36 0.68 16 27 H 0.04 0.90 8.11 -51.93 -0.42 0.47 16 28 H 0.04 1.00 7.61 -51.93 -0.40 0.61 16 29 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.42 5.69 8.82 -34.47 -0.30 5.39 16 31 H 0.41 2.12 9.10 45.56 0.41 2.54 16 32 H 0.12 1.10 8.12 -51.93 -0.42 0.68 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 0.90 8.05 -51.93 -0.42 0.48 16 35 H 0.11 0.85 6.85 -51.93 -0.36 0.50 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 324.12 15.07 4.88 4.88 Total: -1.00 -36.38 324.12 -7.73 -44.11 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -3.79 Total: 3.41 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -0.78 Total: -1.68 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 0.31 Total: -62.50 kcal Atomic # 8 Polarization: -57.67 SS G_CDS: -2.69 Total: -60.36 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 56.05 SS G_CDS: -0.65 Total: 55.41 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -36.38 -7.73 -44.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547578668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.894 kcal (2) G-P(sol) polarization free energy of solvation -36.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds