Wall clock time and date at job start Tue Mar 31 2020 03:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99998 * 2 1 4 4 C 1.50694 * 109.47075 * 274.99691 * 3 2 1 5 5 H 1.08012 * 120.00187 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00508 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99397 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00369 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47364 * 90.00008 * 8 6 4 10 10 H 1.48510 * 109.46835 * 209.99749 * 8 6 4 11 11 H 1.48498 * 109.47347 * 329.99319 * 8 6 4 12 12 S 1.65596 * 120.00021 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.40310 * 156.46054 * 12 2 1 14 14 O 1.42108 * 106.40218 * 23.54337 * 12 2 1 15 15 N 1.65598 * 107.22187 * 270.00581 * 12 2 1 16 16 C 1.46497 * 120.00148 * 64.99759 * 15 12 2 17 17 H 1.09005 * 109.47350 * 335.00022 * 16 15 12 18 18 C 1.50697 * 109.47324 * 95.00211 * 16 15 12 19 19 O 1.20825 * 119.99647 * 0.02562 * 18 16 15 20 20 O 1.34232 * 120.00255 * 180.02562 * 18 16 15 21 21 C 1.53003 * 109.47207 * 215.00417 * 16 15 12 22 22 C 1.53001 * 117.51964 * 111.28336 * 21 16 15 23 23 C 1.52999 * 60.00190 * 107.47982 * 22 21 16 24 24 H 1.08996 * 109.47742 * 270.00275 * 1 2 3 25 25 H 1.09001 * 109.46831 * 30.00380 * 1 2 3 26 26 H 1.08996 * 109.47102 * 150.00232 * 1 2 3 27 27 H 1.09000 * 109.47133 * 34.99876 * 3 2 1 28 28 H 1.09000 * 109.46905 * 154.99584 * 3 2 1 29 29 H 0.97003 * 119.99902 * 179.97438 * 7 6 4 30 30 H 0.97001 * 119.99753 * 245.00367 * 15 12 2 31 31 H 0.96703 * 117.00052 * 179.97438 * 20 18 16 32 32 H 1.09002 * 115.54973 * 325.58120 * 21 16 15 33 33 H 1.09001 * 117.49733 * 214.97413 * 22 21 16 34 34 H 1.08995 * 117.49577 * 359.97438 * 22 21 16 35 35 H 1.09004 * 117.50150 * 252.51496 * 23 22 21 36 36 H 1.09004 * 117.49681 * 107.48417 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3415 1.7656 -1.4154 5 1 1.9283 1.1938 -2.2332 6 6 3.0007 2.9502 -1.6665 7 7 3.5034 3.6468 -0.6707 8 14 3.1785 3.5665 -3.4209 9 1 2.0182 4.4278 -3.7631 10 1 4.4322 4.3529 -3.5446 11 1 3.2268 2.4088 -4.3497 12 16 2.2930 -1.4341 0.0006 13 8 3.5760 -1.1570 -0.5439 14 8 1.4113 -2.4067 -0.5435 15 7 2.5380 -1.8581 1.5826 16 6 1.3945 -2.1769 2.4410 17 1 0.5030 -1.6802 2.0581 18 6 1.1740 -3.6676 2.4509 19 8 1.8980 -4.3897 1.8073 20 8 0.1732 -4.1933 3.1747 21 6 1.6755 -1.6934 3.8652 22 6 0.8456 -0.5201 4.3901 23 6 0.5926 -1.9333 4.9192 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6502 2.0043 0.5894 28 1 3.1858 1.1177 0.4344 29 1 3.9675 4.4801 -0.8474 30 1 3.4387 -1.8952 1.9408 31 1 0.0709 -5.1545 3.1494 32 1 2.7148 -1.7588 4.1874 33 1 1.3389 0.1864 5.0576 34 1 0.0995 -0.0921 3.7207 35 1 -0.3201 -2.4352 4.5979 36 1 0.9196 -2.1564 5.9349 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547578668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:32 Heat of formation + Delta-G solvation = -164.528444 kcal Electronic energy + Delta-G solvation = -22664.107802 eV Core-core repulsion = 19082.169204 eV Total energy + Delta-G solvation = -3581.938598 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.097 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.48041 -38.61601 -38.31076 -37.24831 -37.20270 -36.91584 -35.20631 -34.50189 -29.68312 -28.86555 -26.79125 -24.23194 -23.77209 -23.04473 -21.77585 -20.52338 -19.26987 -18.95825 -18.54739 -18.38717 -17.66153 -17.47259 -16.89019 -16.65562 -16.19033 -15.48470 -15.07226 -14.99210 -14.86365 -14.16624 -14.10043 -13.93286 -13.41864 -13.35879 -13.22352 -13.05718 -12.93477 -12.68441 -12.51221 -12.45582 -12.39814 -12.28041 -12.11467 -11.96021 -11.75206 -11.40013 -11.12057 -10.69542 -10.57260 -9.82801 -8.19863 -6.31006 -0.47495 1.13588 1.39536 1.42241 1.52441 1.80963 2.01140 2.40638 2.56326 3.00758 3.11673 3.36742 3.46649 3.73485 3.88290 3.99698 4.11709 4.24033 4.41461 4.66569 4.74128 4.81320 4.96070 5.07645 5.09227 5.21899 5.26709 5.39875 5.44271 5.59211 5.68836 5.78317 5.97423 6.11872 6.76893 6.97846 7.37784 8.87647 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024966 B = 0.005152 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.243050 B = 5433.763574 C = 5977.020332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.997 5.997 3 C 0.272 3.728 4 C -0.552 4.552 5 H 0.050 0.950 6 C 0.015 3.985 7 N -0.922 5.922 8 Si 0.954 3.046 9 H -0.264 1.264 10 H -0.279 1.279 11 H -0.277 1.277 12 S 2.795 3.205 13 O -1.005 7.005 14 O -1.005 7.005 15 N -1.099 6.099 16 C 0.195 3.805 17 H 0.130 0.870 18 C 0.471 3.529 19 O -0.540 6.540 20 O -0.496 6.496 21 C -0.182 4.182 22 C -0.167 4.167 23 C -0.146 4.146 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.018 0.982 29 H 0.268 0.732 30 H 0.427 0.573 31 H 0.427 0.573 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.265 -10.306 14.261 19.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.840 5.840 3 C 0.149 3.851 4 C -0.591 4.591 5 H 0.068 0.932 6 C -0.185 4.185 7 N -0.561 5.561 8 Si 0.779 3.221 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.202 1.202 12 S 2.803 3.197 13 O -0.989 6.989 14 O -0.988 6.988 15 N -0.860 5.860 16 C 0.085 3.915 17 H 0.148 0.852 18 C 0.311 3.689 19 O -0.430 6.430 20 O -0.308 6.308 21 C -0.201 4.201 22 C -0.203 4.203 23 C -0.183 4.183 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.055 0.945 28 H 0.036 0.964 29 H 0.077 0.923 30 H 0.263 0.737 31 H 0.289 0.711 32 H 0.141 0.859 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.133 0.867 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.851 -10.418 13.287 19.064 hybrid contribution 0.814 -0.061 -0.771 1.123 sum -8.038 -10.479 12.516 18.195 Atomic orbital electron populations 1.21724 0.77842 1.03985 1.02912 1.57457 1.15802 1.21679 1.89037 1.18659 0.90587 0.80001 0.95856 1.21850 1.36321 1.06645 0.94316 0.93180 1.25685 0.94782 0.96771 1.01248 1.69993 1.37786 1.15726 1.32632 0.85627 0.78184 0.78260 0.80072 1.18900 1.20400 1.20233 1.01379 0.72424 0.72612 0.73312 1.93581 1.42932 1.85473 1.76901 1.93522 1.67664 1.60157 1.77475 1.55786 1.15166 1.83991 1.31020 1.19939 0.90397 0.87666 0.93489 0.85242 1.24123 0.77301 0.92764 0.74717 1.90723 1.47393 1.62964 1.41909 1.84474 1.49413 1.32131 1.64815 1.22320 0.99801 1.07453 0.90572 1.23231 1.01898 0.91744 1.03466 1.23200 0.99011 0.98216 0.97874 0.90152 0.90432 0.90856 0.94450 0.96419 0.92347 0.73721 0.71128 0.85919 0.87402 0.87892 0.86695 0.86792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.48 10.09 127.77 1.29 3.77 16 2 N -1.00 -39.84 3.23 -543.23 -1.75 -41.59 16 3 C 0.27 13.41 5.08 85.63 0.43 13.85 16 4 C -0.55 -31.01 9.38 25.60 0.24 -30.77 16 5 H 0.05 2.84 7.81 -2.90 -0.02 2.82 16 6 C 0.01 0.84 5.46 84.65 0.46 1.30 16 7 N -0.92 -53.26 13.29 21.45 0.28 -52.98 16 8 Si 0.95 44.48 29.54 68.60 2.03 46.51 16 9 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 12 S 2.79 113.60 6.01 -56.49 -0.34 113.26 16 13 O -1.00 -50.44 17.11 -128.00 -2.19 -52.63 16 14 O -1.01 -43.15 16.50 -128.00 -2.11 -45.26 16 15 N -1.10 -33.34 5.02 -172.52 -0.87 -34.21 16 16 C 0.19 4.63 2.94 44.25 0.13 4.76 16 17 H 0.13 2.76 6.37 -2.38 -0.02 2.74 16 18 C 0.47 11.70 7.68 71.23 0.55 12.25 16 19 O -0.54 -18.06 17.19 21.97 0.38 -17.69 16 20 O -0.50 -7.65 11.37 -51.44 -0.58 -8.23 16 21 C -0.18 -3.20 5.37 -10.79 -0.06 -3.26 16 22 C -0.17 -2.51 10.18 30.59 0.31 -2.20 16 23 C -0.15 -1.83 9.45 30.60 0.29 -1.54 16 24 H 0.08 1.79 7.41 -2.39 -0.02 1.77 16 25 H 0.08 2.48 8.07 -2.39 -0.02 2.46 16 26 H 0.07 2.17 7.02 -2.39 -0.02 2.16 16 27 H 0.04 1.82 8.11 -2.39 -0.02 1.80 16 28 H 0.02 0.95 7.61 -2.39 -0.02 0.93 16 29 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.43 11.64 8.82 -96.75 -0.85 10.79 16 31 H 0.43 3.21 9.10 -74.06 -0.67 2.54 16 32 H 0.12 2.05 8.12 -2.39 -0.02 2.03 16 33 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.10 1.53 8.05 -2.39 -0.02 1.51 16 35 H 0.11 1.35 6.85 -2.39 -0.02 1.33 16 36 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -78.68 324.12 -1.91 -80.59 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -0.40 Total: 14.06 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 3.65 Total: -1.83 kcal Atomic # 7 Polarization: -126.44 SS G_CDS: -2.33 Total: -128.78 kcal Atomic # 8 Polarization: -119.30 SS G_CDS: -4.51 Total: -123.81 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: 113.60 SS G_CDS: -0.34 Total: 113.26 kcal Total: -78.68 -1.91 -80.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547578668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.942 kcal (2) G-P(sol) polarization free energy of solvation -78.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds