Wall clock time and date at job start Tue Mar 31 2020 03:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47353 * 2 1 4 4 C 1.50696 * 109.47105 * 239.99945 * 2 1 3 5 5 H 1.08007 * 120.00137 * 239.72261 * 4 2 1 6 6 C 1.37878 * 120.00426 * 60.00060 * 4 2 1 7 7 N 1.31518 * 119.99319 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00321 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47010 * 90.00068 * 8 6 4 10 10 H 1.48504 * 109.46828 * 209.99998 * 8 6 4 11 11 H 1.48500 * 109.47070 * 329.99639 * 8 6 4 12 12 N 1.46498 * 109.47051 * 119.99871 * 2 1 3 13 13 C 1.46504 * 119.99931 * 60.00315 * 12 2 1 14 14 S 1.65600 * 120.00184 * 239.99879 * 12 2 1 15 15 O 1.42102 * 106.40333 * 198.09653 * 14 12 2 16 16 O 1.42104 * 106.40354 * 331.01961 * 14 12 2 17 17 N 1.65598 * 107.21894 * 84.55969 * 14 12 2 18 18 C 1.47073 * 136.05927 * 83.39693 * 17 14 12 19 19 C 1.53757 * 87.88566 * 152.96859 * 18 17 14 20 20 C 1.47076 * 136.05771 * 263.77474 * 17 14 12 21 21 H 1.09007 * 113.46456 * 92.24161 * 20 17 14 22 22 C 1.50695 * 113.46358 * 321.86239 * 20 17 14 23 23 O 1.20822 * 120.00540 * 331.97708 * 22 20 17 24 24 O 1.34232 * 119.99502 * 151.98030 * 22 20 17 25 25 H 1.09003 * 109.46829 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47174 * 300.00069 * 1 2 3 27 27 H 1.08994 * 109.46907 * 60.00397 * 1 2 3 28 28 H 0.97003 * 119.99672 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47181 * 88.25952 * 13 12 2 30 30 H 1.09002 * 109.46925 * 208.26050 * 13 12 2 31 31 H 1.09000 * 109.47101 * 328.25086 * 13 12 2 32 32 H 1.09001 * 113.46684 * 267.69896 * 18 17 14 33 33 H 1.08995 * 113.46316 * 38.13734 * 18 17 14 34 34 H 1.09003 * 114.39277 * 272.67340 * 19 18 17 35 35 H 1.09002 * 114.08471 * 139.78706 * 19 18 17 36 36 H 0.96707 * 116.99958 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6570 -1.5859 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.3449 -2.1616 -4.4123 10 1 2.4874 -0.1402 -5.1120 11 1 3.6310 -1.7566 -3.7119 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 16 2.9704 0.1142 2.2862 15 8 3.6155 -0.8819 3.0679 16 8 3.6773 1.1022 1.5491 17 7 1.9586 0.9307 3.3118 18 6 1.1937 0.6064 4.5254 19 6 1.3037 2.0878 4.9219 20 6 1.4243 2.2977 3.4062 21 1 0.4636 2.4237 2.9067 22 6 2.4228 3.3600 3.0250 23 8 3.6050 3.1591 3.1733 24 8 1.9989 4.5294 2.5205 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 0.7088 1.1612 -3.4844 29 1 2.3990 -2.7378 0.9453 30 1 1.6540 -2.2929 2.4995 31 1 0.6769 -2.2923 1.0118 32 1 0.1718 0.2863 4.3217 33 1 1.7195 -0.0662 5.2030 34 1 2.2052 2.3385 5.4810 35 1 0.3943 2.4999 5.3593 36 1 2.6766 5.1801 2.2911 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563227260.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:26 Heat of formation + Delta-G solvation = -116.398775 kcal Electronic energy + Delta-G solvation = -23207.192326 eV Core-core repulsion = 19627.340787 eV Total energy + Delta-G solvation = -3579.851539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.097 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.63663 -38.56256 -36.62013 -36.18198 -35.84242 -35.15186 -32.59194 -29.12148 -28.77769 -27.59693 -25.60197 -25.14700 -22.44187 -21.27940 -20.61400 -18.34374 -18.17908 -17.49127 -17.00803 -16.52839 -16.28959 -15.78337 -15.25502 -14.67908 -14.27080 -13.91879 -13.68327 -13.36937 -13.07570 -12.83743 -12.71234 -12.16969 -11.98013 -11.74618 -11.66981 -11.46848 -11.38697 -11.28489 -11.21916 -10.97782 -10.94535 -10.80223 -10.49317 -10.32356 -10.31533 -10.02981 -9.29724 -9.15156 -8.47606 -7.99278 -6.09019 -4.15329 1.03448 2.24192 3.04156 3.27683 3.34552 3.37029 3.41058 4.06551 4.14926 4.39460 4.57477 4.69138 4.90611 5.15812 5.22479 5.35014 5.40949 5.52838 5.59275 5.91123 5.93591 6.13363 6.27722 6.39645 6.59401 6.63558 6.72737 6.76585 6.96967 7.42775 7.60337 7.75732 8.01319 8.02947 8.25263 8.86669 9.50501 10.96779 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019999 B = 0.006375 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.709506 B = 4391.142543 C = 4894.606382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.270 3.730 3 H 0.053 0.947 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.991 5.991 13 C 0.108 3.892 14 S 2.790 3.210 15 O -0.986 6.986 16 O -0.951 6.951 17 N -1.028 6.028 18 C 0.124 3.876 19 C -0.132 4.132 20 C 0.162 3.838 21 H 0.126 0.874 22 C 0.467 3.533 23 O -0.484 6.484 24 O -0.513 6.513 25 H 0.034 0.966 26 H 0.009 0.991 27 H 0.093 0.907 28 H 0.263 0.737 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.054 3.251 14.061 15.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.167 3.833 3 H 0.070 0.930 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.834 5.834 13 C -0.038 4.038 14 S 2.802 3.198 15 O -0.970 6.970 16 O -0.935 6.935 17 N -0.867 5.867 18 C -0.001 4.001 19 C -0.171 4.171 20 C 0.053 3.947 21 H 0.143 0.857 22 C 0.306 3.694 23 O -0.369 6.369 24 O -0.325 6.325 25 H 0.053 0.947 26 H 0.028 0.972 27 H 0.112 0.888 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -3.962 2.886 13.941 14.777 hybrid contribution 0.350 -0.079 -1.352 1.399 sum -3.612 2.807 12.588 13.394 Atomic orbital electron populations 1.22118 0.98214 0.99790 1.00556 1.18688 0.91292 0.92664 0.80688 0.92974 1.21323 1.31400 1.13137 0.89996 0.91953 1.24911 0.94973 0.94990 0.99024 1.69855 1.36643 1.22672 1.23798 0.86477 0.79318 0.79281 0.82240 1.20603 1.21093 1.19835 1.57905 1.70212 1.19783 1.35495 1.21161 1.01699 0.82032 0.98932 1.01825 0.73355 0.72711 0.71958 1.93529 1.72380 1.59663 1.71460 1.93639 1.68978 1.60479 1.70412 1.61167 1.63650 1.19462 1.42428 1.22454 0.96460 0.96743 0.84459 1.23590 1.04277 0.96783 0.92464 1.21659 0.95088 0.79875 0.98040 0.85651 1.23428 0.89288 0.82449 0.74234 1.90763 1.18479 1.78843 1.48783 1.84480 1.45540 1.26888 1.75601 0.94659 0.97170 0.88805 0.92693 0.93212 0.93088 0.91054 0.89225 0.89497 0.88086 0.88374 0.72999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 8.95 37.16 0.33 -2.95 16 2 C 0.27 6.67 2.60 -69.08 -0.18 6.49 16 3 H 0.05 1.44 7.06 -51.93 -0.37 1.07 16 4 C -0.52 -14.21 8.37 -34.44 -0.29 -14.50 16 5 H 0.06 1.71 7.61 -52.48 -0.40 1.31 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.83 11.32 55.43 0.63 -24.20 16 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.99 -21.30 3.12 -115.85 -0.36 -21.66 16 13 C 0.11 1.98 9.59 59.85 0.57 2.55 16 14 S 2.79 59.36 6.54 -107.50 -0.70 58.66 16 15 O -0.99 -21.97 17.00 -57.17 -0.97 -22.94 16 16 O -0.95 -24.07 14.52 -65.39 -0.95 -25.02 16 17 N -1.03 -16.41 3.95 -118.98 -0.47 -16.88 16 18 C 0.12 1.30 8.74 -8.36 -0.07 1.23 16 19 C -0.13 -1.18 8.03 -26.08 -0.21 -1.39 16 20 C 0.16 2.15 4.61 -73.54 -0.34 1.81 16 21 H 0.13 1.40 8.14 -51.92 -0.42 0.98 16 22 C 0.47 7.38 7.22 36.00 0.26 7.64 16 23 O -0.48 -9.48 15.83 -25.36 -0.40 -9.89 16 24 O -0.51 -6.56 13.42 -39.26 -0.53 -7.09 16 25 H 0.03 0.74 6.67 -51.93 -0.35 0.39 16 26 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.05 0.93 8.10 -51.93 -0.42 0.51 16 30 H 0.05 0.79 7.58 -51.93 -0.39 0.40 16 31 H 0.07 1.23 6.43 -51.93 -0.33 0.89 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 0.95 8.11 -51.93 -0.42 0.53 16 35 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.41 3.66 9.10 45.56 0.41 4.08 16 LS Contribution 315.71 15.07 4.76 4.76 Total: -1.00 -36.68 315.71 -7.87 -44.54 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -3.83 Total: 0.86 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -0.02 Total: 2.51 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: -0.20 Total: -62.74 kcal Atomic # 8 Polarization: -62.09 SS G_CDS: -2.85 Total: -64.94 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 59.36 SS G_CDS: -0.70 Total: 58.66 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -36.68 -7.87 -44.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563227260.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.854 kcal (2) G-P(sol) polarization free energy of solvation -36.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds