Wall clock time and date at job start Tue Mar 31 2020 02:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86799 * 120.00288 * 2 1 4 4 H 1.48497 * 109.47069 * 275.20240 * 3 2 1 5 5 H 1.48504 * 109.46928 * 35.19611 * 3 2 1 6 6 H 1.48498 * 109.47157 * 155.20058 * 3 2 1 7 7 C 1.39156 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99400 * 350.30566 * 7 2 1 9 9 N 1.36719 * 120.00294 * 170.30346 * 7 2 1 10 10 C 1.46504 * 120.00272 * 310.55155 * 9 7 2 11 11 C 1.50698 * 109.47347 * 264.63982 * 10 9 7 12 12 O 1.20826 * 119.99956 * 0.02562 * 11 10 9 13 13 O 1.34221 * 119.99941 * 179.97438 * 11 10 9 14 14 C 1.34777 * 119.99883 * 130.55337 * 9 7 2 15 15 O 1.21590 * 119.99731 * 182.08146 * 14 9 7 16 16 C 1.47844 * 120.00428 * 2.08152 * 14 9 7 17 17 C 1.39655 * 120.01036 * 137.67869 * 16 14 9 18 18 C 1.37754 * 119.99440 * 180.02562 * 17 16 14 19 19 C 1.39613 * 120.00952 * 0.02562 * 18 17 16 20 20 C 1.47958 * 119.99827 * 179.97438 * 19 18 17 21 21 N 1.34777 * 120.00412 * 180.02562 * 20 19 18 22 22 O 1.21541 * 119.99737 * 359.97438 * 20 19 18 23 23 C 1.39615 * 120.00756 * 0.25571 * 19 18 17 24 24 C 1.37753 * 120.00508 * 359.48541 * 23 19 18 25 25 H 0.96993 * 119.99701 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46297 * 24.63958 * 10 9 7 27 27 H 1.09000 * 109.46976 * 144.63295 * 10 9 7 28 28 H 0.96700 * 116.99987 * 179.97438 * 13 11 10 29 29 H 1.08002 * 120.00517 * 359.97438 * 17 16 14 30 30 H 1.08003 * 119.99651 * 179.97438 * 18 17 16 31 31 H 0.96998 * 119.99209 * 359.97438 * 21 20 19 32 32 H 0.96996 * 120.00390 * 179.72507 * 21 20 19 33 33 H 1.07997 * 119.99514 * 179.72182 * 23 19 18 34 34 H 1.08008 * 119.99933 * 180.25746 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.3846 2.1098 -1.3943 5 1 1.5037 2.6184 0.8070 6 1 3.5952 1.4108 0.5872 7 6 2.0088 -1.2051 -0.0005 8 1 1.4802 -2.1338 0.1566 9 7 3.3613 -1.2135 -0.2000 10 6 3.9403 -0.4769 -1.3262 11 6 4.1327 -1.4118 -2.4923 12 8 3.8179 -2.5741 -2.3931 13 8 4.6527 -0.9531 -3.6415 14 6 4.1620 -1.8995 0.6395 15 8 5.3677 -1.8762 0.4846 16 6 3.5743 -2.6805 1.7488 17 6 4.0655 -3.9542 2.0433 18 6 3.5173 -4.6818 3.0766 19 6 2.4703 -4.1463 3.8291 20 6 1.8813 -4.9283 4.9385 21 7 0.8703 -4.4117 5.6647 22 8 2.3087 -6.0369 5.1944 23 6 1.9751 -2.8754 3.5311 24 6 2.5265 -2.1452 2.5014 25 1 -0.4849 0.8400 -0.0004 26 1 3.2685 0.3314 -1.6154 27 1 4.9036 -0.0607 -1.0313 28 1 4.7574 -1.5903 -4.3613 29 1 4.8746 -4.3691 1.4605 30 1 3.8969 -5.6670 3.3041 31 1 0.5290 -3.5270 5.4602 32 1 0.4815 -4.9259 6.3894 33 1 1.1622 -2.4632 4.1105 34 1 2.1461 -1.1604 2.2736 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739088684.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:55 Heat of formation + Delta-G solvation = -122.364265 kcal Electronic energy + Delta-G solvation = -23155.644623 eV Core-core repulsion = 19440.090449 eV Total energy + Delta-G solvation = -3715.554173 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.21360 -39.72771 -38.86559 -37.26713 -35.69282 -35.08246 -33.77285 -32.26302 -31.05299 -30.50060 -28.24292 -25.39983 -24.10573 -22.23624 -21.67105 -20.61227 -19.44346 -18.19112 -17.75071 -17.65928 -16.86836 -16.65225 -15.80216 -15.38950 -15.14222 -14.78029 -14.70161 -14.61272 -14.34202 -13.60819 -13.51296 -13.12958 -12.92083 -12.76974 -12.60071 -12.04418 -11.95208 -11.74184 -11.26740 -11.12514 -10.76462 -10.66531 -10.31011 -10.04902 -9.98414 -9.69802 -9.54996 -9.01954 -8.62265 -8.47189 -8.07433 -6.68422 -4.46778 0.96818 1.80831 2.74011 2.82636 2.89612 3.04807 3.06871 3.21181 3.57951 3.72575 3.86710 4.09217 4.32397 4.71730 4.97139 5.14536 5.33586 5.45749 5.60021 5.73208 5.75434 5.82592 5.85699 6.10479 6.43413 6.59686 6.67514 6.78746 6.90859 6.93007 7.01695 7.23513 7.37397 7.75436 8.06785 8.30054 8.38659 8.63640 8.95666 9.29546 10.39190 Molecular weight = 292.09amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.005544 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.229831 B = 5049.500616 C = 6052.999329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.070 3.930 3 Si 0.861 3.139 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.254 1.254 7 C -0.346 4.346 8 H 0.108 0.892 9 N -0.445 5.445 10 C 0.107 3.893 11 C 0.466 3.534 12 O -0.499 6.499 13 O -0.526 6.526 14 C 0.539 3.461 15 O -0.578 6.578 16 C -0.063 4.063 17 C -0.088 4.088 18 C -0.075 4.075 19 C -0.138 4.138 20 C 0.568 3.432 21 N -0.853 5.853 22 O -0.549 6.549 23 C -0.102 4.102 24 C -0.058 4.058 25 H 0.279 0.721 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.401 0.599 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.403 0.597 32 H 0.401 0.599 33 H 0.125 0.875 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.402 0.478 3.975 4.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.139 4.139 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.177 1.177 7 C -0.474 4.474 8 H 0.126 0.874 9 N -0.165 5.165 10 C -0.017 4.017 11 C 0.306 3.694 12 O -0.385 6.385 13 O -0.337 6.337 14 C 0.330 3.670 15 O -0.461 6.461 16 C -0.066 4.066 17 C -0.107 4.107 18 C -0.094 4.094 19 C -0.142 4.142 20 C 0.355 3.645 21 N -0.417 5.417 22 O -0.427 6.427 23 C -0.120 4.120 24 C -0.076 4.076 25 H 0.090 0.910 26 H 0.127 0.873 27 H 0.129 0.871 28 H 0.259 0.741 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.233 0.767 32 H 0.232 0.768 33 H 0.143 0.857 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.045 -0.112 4.259 4.726 hybrid contribution -0.300 0.736 -0.598 0.994 sum 1.745 0.624 3.662 4.104 Atomic orbital electron populations 1.69604 1.06084 1.28519 1.44260 1.25532 0.95293 0.98435 0.94689 0.87076 0.81494 0.83489 0.79261 1.19326 1.20354 1.17733 1.19115 0.79839 0.95767 1.52640 0.87439 1.43171 1.07575 1.46001 1.19799 1.21380 1.02152 0.93579 0.84621 1.24400 0.72804 0.88978 0.83265 1.90677 1.46172 1.19233 1.82422 1.84561 1.77130 1.47586 1.24449 1.18429 0.85616 0.81060 0.81938 1.90675 1.14566 1.66058 1.74822 1.19981 0.96140 0.94670 0.95794 1.21122 0.99407 0.93249 0.96895 1.21019 0.94662 0.99748 0.93939 1.19869 1.00028 0.95856 0.98413 1.18422 0.79041 0.85436 0.81624 1.43767 1.38040 1.22519 1.37328 1.90773 1.61885 1.20268 1.69787 1.21184 0.99567 0.93455 0.97844 1.21688 0.92353 1.01679 0.91919 0.90982 0.87345 0.87086 0.74134 0.85148 0.84852 0.76705 0.76825 0.85720 0.82764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.03 13.95 55.51 0.77 -20.26 16 2 C 0.07 1.63 5.16 -17.44 -0.09 1.54 16 3 Si 0.86 17.56 24.87 -169.99 -4.23 13.33 16 4 H -0.27 -5.26 6.91 56.52 0.39 -4.87 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.25 -5.14 7.01 56.52 0.40 -4.75 16 7 C -0.35 -8.24 6.61 -15.03 -0.10 -8.34 16 8 H 0.11 2.83 7.49 -52.48 -0.39 2.43 16 9 N -0.44 -10.10 1.55 -117.17 -0.18 -10.28 16 10 C 0.11 2.21 4.38 -5.19 -0.02 2.19 16 11 C 0.47 9.33 8.36 36.00 0.30 9.64 16 12 O -0.50 -11.60 17.07 -18.75 -0.32 -11.92 16 13 O -0.53 -8.14 13.42 -39.24 -0.53 -8.67 16 14 C 0.54 12.28 7.10 -12.33 -0.09 12.19 16 15 O -0.58 -14.01 16.61 5.29 0.09 -13.93 16 16 C -0.06 -1.27 5.29 -104.90 -0.55 -1.82 16 17 C -0.09 -1.60 9.64 -39.23 -0.38 -1.98 16 18 C -0.07 -1.25 9.58 -39.25 -0.38 -1.62 16 19 C -0.14 -2.18 5.88 -104.89 -0.62 -2.80 16 20 C 0.57 8.45 8.05 -12.28 -0.10 8.35 16 21 N -0.85 -8.75 8.82 30.56 0.27 -8.48 16 22 O -0.55 -9.95 17.17 5.33 0.09 -9.86 16 23 C -0.10 -1.55 9.53 -39.25 -0.37 -1.92 16 24 C -0.06 -1.06 8.09 -39.23 -0.32 -1.38 16 25 H 0.28 6.43 8.31 -40.82 -0.34 6.09 16 26 H 0.11 2.15 4.29 -51.93 -0.22 1.93 16 27 H 0.11 2.13 7.56 -51.93 -0.39 1.73 16 28 H 0.40 4.28 9.10 45.56 0.41 4.69 16 29 H 0.13 2.31 8.06 -52.49 -0.42 1.88 16 30 H 0.13 2.07 7.64 -52.48 -0.40 1.67 16 31 H 0.40 3.24 6.85 -40.82 -0.28 2.96 16 32 H 0.40 3.35 8.93 -40.82 -0.36 2.99 16 33 H 0.12 1.45 6.39 -52.49 -0.34 1.12 16 34 H 0.15 2.98 6.26 -52.48 -0.33 2.65 16 LS Contribution 303.00 15.07 4.57 4.57 Total: -1.00 -32.09 303.00 -4.06 -36.14 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -1.88 Total: 15.31 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: -2.71 Total: 14.03 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.86 Total: -39.02 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -0.67 Total: -44.37 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -4.23 Total: 13.33 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.09 -4.06 -36.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739088684.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.220 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds