Wall clock time and date at job start Tue Mar 31 2020 02:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86799 * 120.00288 * 2 1 4 4 H 1.48497 * 109.47069 * 275.20240 * 3 2 1 5 5 H 1.48504 * 109.46928 * 35.19611 * 3 2 1 6 6 H 1.48498 * 109.47157 * 155.20058 * 3 2 1 7 7 C 1.39156 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99400 * 350.30566 * 7 2 1 9 9 N 1.36719 * 120.00294 * 170.30346 * 7 2 1 10 10 C 1.46504 * 120.00272 * 310.55155 * 9 7 2 11 11 C 1.50698 * 109.47347 * 264.63982 * 10 9 7 12 12 O 1.20826 * 119.99956 * 0.02562 * 11 10 9 13 13 O 1.34221 * 119.99941 * 179.97438 * 11 10 9 14 14 C 1.34777 * 119.99883 * 130.55337 * 9 7 2 15 15 O 1.21590 * 119.99731 * 182.08146 * 14 9 7 16 16 C 1.47844 * 120.00428 * 2.08152 * 14 9 7 17 17 C 1.39655 * 120.01036 * 137.67869 * 16 14 9 18 18 C 1.37754 * 119.99440 * 180.02562 * 17 16 14 19 19 C 1.39613 * 120.00952 * 0.02562 * 18 17 16 20 20 C 1.47958 * 119.99827 * 179.97438 * 19 18 17 21 21 N 1.34777 * 120.00412 * 180.02562 * 20 19 18 22 22 O 1.21541 * 119.99737 * 359.97438 * 20 19 18 23 23 C 1.39615 * 120.00756 * 0.25571 * 19 18 17 24 24 C 1.37753 * 120.00508 * 359.48541 * 23 19 18 25 25 H 0.96993 * 119.99701 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46297 * 24.63958 * 10 9 7 27 27 H 1.09000 * 109.46976 * 144.63295 * 10 9 7 28 28 H 0.96700 * 116.99987 * 179.97438 * 13 11 10 29 29 H 1.08002 * 120.00517 * 359.97438 * 17 16 14 30 30 H 1.08003 * 119.99651 * 179.97438 * 18 17 16 31 31 H 0.96998 * 119.99209 * 359.97438 * 21 20 19 32 32 H 0.96996 * 120.00390 * 179.72507 * 21 20 19 33 33 H 1.07997 * 119.99514 * 179.72182 * 23 19 18 34 34 H 1.08008 * 119.99933 * 180.25746 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.3846 2.1098 -1.3943 5 1 1.5037 2.6184 0.8070 6 1 3.5952 1.4108 0.5872 7 6 2.0088 -1.2051 -0.0005 8 1 1.4802 -2.1338 0.1566 9 7 3.3613 -1.2135 -0.2000 10 6 3.9403 -0.4769 -1.3262 11 6 4.1327 -1.4118 -2.4923 12 8 3.8179 -2.5741 -2.3931 13 8 4.6527 -0.9531 -3.6415 14 6 4.1620 -1.8995 0.6395 15 8 5.3677 -1.8762 0.4846 16 6 3.5743 -2.6805 1.7488 17 6 4.0655 -3.9542 2.0433 18 6 3.5173 -4.6818 3.0766 19 6 2.4703 -4.1463 3.8291 20 6 1.8813 -4.9283 4.9385 21 7 0.8703 -4.4117 5.6647 22 8 2.3087 -6.0369 5.1944 23 6 1.9751 -2.8754 3.5311 24 6 2.5265 -2.1452 2.5014 25 1 -0.4849 0.8400 -0.0004 26 1 3.2685 0.3314 -1.6154 27 1 4.9036 -0.0607 -1.0313 28 1 4.7574 -1.5903 -4.3613 29 1 4.8746 -4.3691 1.4605 30 1 3.8969 -5.6670 3.3041 31 1 0.5290 -3.5270 5.4602 32 1 0.4815 -4.9259 6.3894 33 1 1.1622 -2.4632 4.1105 34 1 2.1461 -1.1604 2.2736 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739088684.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:55 Heat of formation + Delta-G solvation = -147.684745 kcal Electronic energy + Delta-G solvation = -23156.742601 eV Core-core repulsion = 19440.090449 eV Total energy + Delta-G solvation = -3716.652152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.79032 -41.08690 -40.36774 -38.68556 -37.26076 -36.79060 -34.87925 -34.07344 -32.47627 -31.84547 -29.84140 -27.14227 -25.56155 -23.62846 -23.13498 -21.95462 -21.07009 -19.67880 -19.27073 -18.97516 -18.46716 -17.85117 -17.37589 -17.06549 -16.70302 -16.33298 -16.08275 -15.89815 -15.77544 -15.13981 -14.97427 -14.63890 -14.46393 -14.30186 -14.14251 -13.57720 -13.38620 -13.31886 -12.98140 -12.64010 -12.39255 -12.05812 -11.98305 -11.69518 -11.32265 -11.23191 -10.75331 -10.72244 -10.01420 -9.89735 -9.82244 -8.48871 -6.32040 -0.40950 0.44043 1.15151 1.24135 1.33894 1.44867 1.49826 1.78398 2.17291 2.20194 2.48265 2.53432 2.82557 3.03218 3.75315 3.86825 3.91326 3.98700 4.07658 4.18474 4.35564 4.37734 4.49110 4.74753 5.07267 5.26015 5.27617 5.29217 5.51043 5.56053 5.82259 5.90659 5.99128 6.14854 6.39072 6.83902 6.96311 7.15934 7.27240 7.52410 8.61898 Molecular weight = 292.09amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.005544 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.229831 B = 5049.500616 C = 6052.999329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.042 3.958 3 Si 0.910 3.090 4 H -0.251 1.251 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.343 4.343 8 H 0.073 0.927 9 N -0.451 5.451 10 C 0.097 3.903 11 C 0.472 3.528 12 O -0.539 6.539 13 O -0.506 6.506 14 C 0.531 3.469 15 O -0.601 6.601 16 C -0.093 4.093 17 C -0.094 4.094 18 C -0.075 4.075 19 C -0.134 4.134 20 C 0.569 3.431 21 N -0.826 5.826 22 O -0.584 6.584 23 C -0.086 4.086 24 C -0.066 4.066 25 H 0.285 0.715 26 H 0.118 0.882 27 H 0.126 0.874 28 H 0.426 0.574 29 H 0.128 0.872 30 H 0.144 0.856 31 H 0.417 0.583 32 H 0.415 0.585 33 H 0.166 0.834 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.030 1.486 4.664 5.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.164 4.164 3 Si 0.732 3.268 4 H -0.175 1.175 5 H -0.198 1.198 6 H -0.177 1.177 7 C -0.470 4.470 8 H 0.090 0.910 9 N -0.171 5.171 10 C -0.027 4.027 11 C 0.314 3.686 12 O -0.428 6.428 13 O -0.320 6.320 14 C 0.323 3.677 15 O -0.487 6.487 16 C -0.096 4.096 17 C -0.113 4.113 18 C -0.094 4.094 19 C -0.137 4.137 20 C 0.355 3.645 21 N -0.390 5.390 22 O -0.465 6.465 23 C -0.104 4.104 24 C -0.085 4.085 25 H 0.095 0.905 26 H 0.135 0.865 27 H 0.143 0.857 28 H 0.287 0.713 29 H 0.146 0.854 30 H 0.162 0.838 31 H 0.250 0.750 32 H 0.248 0.752 33 H 0.183 0.817 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.646 0.932 4.928 5.278 hybrid contribution -0.206 0.378 -0.824 0.930 sum 1.439 1.310 4.104 4.542 Atomic orbital electron populations 1.69673 1.07351 1.29634 1.45332 1.25966 0.95686 1.00819 0.93959 0.86312 0.80295 0.79962 0.80188 1.17549 1.19793 1.17744 1.18718 0.80162 0.94825 1.53325 0.90951 1.43195 1.07140 1.46249 1.20552 1.21515 1.02933 0.93740 0.84551 1.24181 0.72193 0.88074 0.84170 1.90671 1.48123 1.20727 1.83312 1.84479 1.75771 1.47860 1.23863 1.18899 0.85477 0.80940 0.82394 1.90630 1.15400 1.66954 1.75683 1.20014 0.97841 0.95565 0.96216 1.21132 0.99654 0.92948 0.97578 1.21152 0.94854 0.99993 0.93432 1.20085 0.99374 0.95951 0.98336 1.18244 0.79775 0.84835 0.81619 1.43543 1.36101 1.23001 1.36392 1.90769 1.63304 1.21680 1.70747 1.21493 0.99541 0.92667 0.96711 1.21617 0.92321 1.01600 0.92955 0.90462 0.86493 0.85676 0.71266 0.85415 0.83841 0.75044 0.75198 0.81669 0.83975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -43.71 13.95 21.70 0.30 -43.41 16 2 C 0.04 1.98 5.16 84.99 0.44 2.42 16 3 Si 0.91 35.10 24.87 68.60 1.71 36.81 16 4 H -0.25 -8.98 6.91 99.48 0.69 -8.29 16 5 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 6 H -0.25 -9.76 7.01 99.48 0.70 -9.06 16 7 C -0.34 -16.62 6.61 84.15 0.56 -16.07 16 8 H 0.07 3.98 7.49 -2.91 -0.02 3.95 16 9 N -0.45 -20.70 1.55 -642.89 -1.00 -21.70 16 10 C 0.10 3.91 4.38 85.63 0.38 4.29 16 11 C 0.47 18.60 8.36 71.24 0.60 19.19 16 12 O -0.54 -25.25 17.07 21.96 0.37 -24.87 16 13 O -0.51 -14.59 13.42 -51.33 -0.69 -15.28 16 14 C 0.53 24.74 7.10 86.79 0.62 25.36 16 15 O -0.60 -29.72 16.61 -4.00 -0.07 -29.79 16 16 C -0.09 -3.86 5.29 -20.05 -0.11 -3.97 16 17 C -0.09 -3.52 9.64 22.50 0.22 -3.30 16 18 C -0.08 -2.49 9.58 22.49 0.22 -2.27 16 19 C -0.13 -4.03 5.88 -20.04 -0.12 -4.15 16 20 C 0.57 15.67 8.05 86.82 0.70 16.37 16 21 N -0.83 -14.22 8.82 -175.52 -1.55 -15.77 16 22 O -0.58 -20.27 17.17 -3.84 -0.07 -20.34 16 23 C -0.09 -2.46 9.53 22.49 0.21 -2.25 16 24 C -0.07 -2.44 8.09 22.50 0.18 -2.25 16 25 H 0.29 12.99 8.31 -92.71 -0.77 12.22 16 26 H 0.12 4.46 4.29 -2.38 -0.01 4.45 16 27 H 0.13 4.66 7.56 -2.39 -0.02 4.64 16 28 H 0.43 8.02 9.10 -74.06 -0.67 7.35 16 29 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 30 H 0.14 4.40 7.64 -2.91 -0.02 4.38 16 31 H 0.42 5.04 6.85 -92.71 -0.64 4.40 16 32 H 0.42 5.54 8.93 -92.71 -0.83 4.71 16 33 H 0.17 3.28 6.39 -2.91 -0.02 3.26 16 34 H 0.14 5.55 6.26 -2.91 -0.02 5.53 16 Total: -1.00 -70.26 303.00 1.95 -68.30 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: -0.95 Total: 32.67 kcal Atomic # 6 Polarization: 29.49 SS G_CDS: 3.89 Total: 33.37 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -2.24 Total: -80.88 kcal Atomic # 8 Polarization: -89.82 SS G_CDS: -0.45 Total: -90.27 kcal Atomic # 14 Polarization: 35.10 SS G_CDS: 1.71 Total: 36.81 kcal Total: -70.26 1.95 -68.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739088684.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.384 kcal (2) G-P(sol) polarization free energy of solvation -70.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds