Wall clock time and date at job start Tue Mar 31 2020 02:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00484 * 2 1 4 4 H 1.48496 * 109.47481 * 270.00103 * 3 2 1 5 5 H 1.48500 * 109.46861 * 30.00076 * 3 2 1 6 6 H 1.48502 * 109.47111 * 149.99940 * 3 2 1 7 7 C 1.37879 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00083 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00265 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47506 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00364 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99482 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00174 * 180.02562 * 11 10 9 14 14 O 1.42892 * 109.47164 * 179.97438 * 13 11 10 15 15 C 1.34930 * 117.00294 * 180.02562 * 14 13 11 16 16 O 1.21656 * 120.00117 * 359.97438 * 15 14 13 17 17 C 1.46303 * 120.00229 * 180.02562 * 15 14 13 18 18 C 1.37889 * 125.86851 * 179.97438 * 17 15 14 19 19 C 1.39865 * 107.68233 * 180.02562 * 18 17 15 20 20 O 1.35129 * 145.12919 * 180.02562 * 19 18 17 21 21 C 1.34375 * 109.62240 * 179.97438 * 20 19 18 22 22 C 1.34478 * 109.45397 * 0.24465 * 21 20 19 23 23 C 1.39178 * 107.42092 * 359.97438 * 19 18 17 24 24 N 1.37088 * 108.12929 * 359.97438 * 23 19 18 25 25 H 0.96993 * 125.74795 * 180.02562 * 24 23 19 26 26 H 0.97006 * 119.99263 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46520 * 59.99691 * 9 7 2 28 28 H 1.09001 * 109.46774 * 300.00435 * 9 7 2 29 29 H 0.97005 * 119.99600 * 0.02562 * 10 9 7 30 30 H 1.09003 * 109.46822 * 60.00066 * 13 11 10 31 31 H 1.09000 * 109.46920 * 300.00202 * 13 11 10 32 32 H 1.08006 * 126.15746 * 359.97438 * 18 17 15 33 33 H 1.08002 * 125.26846 * 179.97438 * 21 20 19 34 34 H 1.08002 * 126.40964 * 179.71397 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4399 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2027 -3.6128 -0.0018 11 6 1.7534 -4.8835 -0.0025 12 8 0.5611 -5.1049 -0.0026 13 6 2.7327 -6.0290 -0.0032 14 8 2.0181 -7.2664 -0.0033 15 6 2.7529 -8.3981 -0.0034 16 8 3.9678 -8.3346 -0.0038 17 6 2.0886 -9.7016 -0.0041 18 6 2.7173 -10.9289 -0.0047 19 6 1.7251 -11.9146 -0.0058 20 8 1.4830 -13.2440 -0.0065 21 6 0.1569 -13.4612 -0.0070 22 6 -0.4900 -12.2823 -0.0120 23 6 0.4936 -11.2661 -0.0053 24 7 0.7231 -9.9146 -0.0032 25 1 0.0419 -9.2241 -0.0021 26 1 -0.4849 0.8402 0.0004 27 1 0.6239 -2.5566 -0.8903 28 1 0.6245 -2.5571 0.8897 29 1 3.1565 -3.4356 -0.0021 30 1 3.3593 -5.9718 0.8869 31 1 3.3593 -5.9707 -0.8931 32 1 3.7840 -11.0984 -0.0052 33 1 -0.3159 -14.4322 -0.0080 34 1 -1.5604 -12.1385 -0.0180 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786034000.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:01 Heat of formation + Delta-G solvation = -83.168918 kcal Electronic energy + Delta-G solvation = -21491.944096 eV Core-core repulsion = 17778.089560 eV Total energy + Delta-G solvation = -3713.854536 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.98529 -41.95785 -40.61156 -39.96783 -37.75641 -36.20640 -34.43416 -33.41351 -31.82129 -31.09244 -29.70712 -28.38277 -25.41475 -24.40575 -22.68147 -21.86107 -21.68898 -21.62479 -19.64152 -19.19110 -18.63774 -18.06149 -17.94296 -17.27504 -17.24247 -16.93519 -16.59396 -16.23765 -16.04886 -15.08220 -14.88689 -14.78049 -14.62187 -14.26138 -14.13010 -13.87171 -13.69414 -13.68216 -12.95303 -12.86309 -12.72828 -12.24069 -12.13307 -11.96747 -11.51111 -11.16253 -10.95070 -10.82920 -9.95233 -9.73760 -9.02784 -8.30897 -6.47288 -0.33954 0.99386 1.00468 1.44040 1.45306 1.45627 1.51912 1.57109 1.61923 1.85883 2.01340 2.34726 2.58627 3.04588 3.51474 3.60717 3.71475 3.88732 4.02049 4.03286 4.20332 4.40045 4.62929 4.71431 4.94915 4.98565 5.08358 5.20293 5.37555 5.40017 5.48278 5.61236 5.80802 6.06292 6.23542 6.40732 6.61623 6.75284 7.18787 7.33401 8.81150 Molecular weight = 292.09amu Principal moments of inertia in cm(-1) A = 0.046814 B = 0.002376 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.974487 B =11783.193641 C =12360.720488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.557 4.557 8 H 0.087 0.913 9 C 0.266 3.734 10 N -0.697 5.697 11 C 0.501 3.499 12 O -0.584 6.584 13 C 0.061 3.939 14 O -0.342 6.342 15 C 0.545 3.455 16 O -0.506 6.506 17 C -0.006 4.006 18 C -0.061 4.061 19 C -0.074 4.074 20 O -0.180 6.180 21 C 0.044 3.956 22 C -0.224 4.224 23 C 0.020 3.980 24 N -0.519 5.519 25 H 0.435 0.565 26 H 0.269 0.731 27 H -0.007 1.007 28 H -0.007 1.007 29 H 0.413 0.587 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.177 0.823 33 H 0.264 0.736 34 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.085 -25.646 -0.010 25.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.594 4.594 8 H 0.105 0.895 9 C 0.144 3.856 10 N -0.349 5.349 11 C 0.286 3.714 12 O -0.465 6.465 13 C -0.016 4.016 14 O -0.257 6.257 15 C 0.391 3.609 16 O -0.394 6.394 17 C -0.116 4.116 18 C -0.088 4.088 19 C -0.125 4.125 20 O -0.078 6.078 21 C -0.023 4.023 22 C -0.245 4.245 23 C -0.095 4.095 24 N -0.122 5.122 25 H 0.275 0.725 26 H 0.078 0.922 27 H 0.011 0.989 28 H 0.011 0.989 29 H 0.250 0.750 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.195 0.805 33 H 0.280 0.720 34 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 3.608 -25.658 -0.005 25.910 hybrid contribution -0.143 1.700 -0.010 1.706 sum 3.465 -23.958 -0.015 24.207 Atomic orbital electron populations 1.70132 1.08228 1.28614 1.49870 1.26053 0.95787 1.03883 0.93863 0.85150 0.78494 0.76974 0.78572 1.19651 1.21064 1.17909 1.21617 0.94457 0.90384 1.52992 0.89550 1.18633 0.88570 0.83778 0.94618 1.46035 1.11799 1.04687 1.72365 1.20648 0.89229 0.84692 0.76790 1.90675 1.18861 1.85313 1.51629 1.22450 0.92841 0.78792 1.07554 1.86154 1.41000 1.14429 1.84165 1.19641 0.85105 0.83063 0.73094 1.90926 1.13973 1.87314 1.47212 1.18836 0.82351 0.90797 1.19617 1.20026 0.99176 0.85072 1.04525 1.19264 0.95411 0.82489 1.15316 1.84057 1.26884 1.20928 1.75939 1.25178 0.78000 1.01381 0.97743 1.21062 1.00482 0.88723 1.14240 1.19716 0.97463 0.84389 1.07961 1.41267 1.06320 1.05648 1.58990 0.72462 0.92214 0.98934 0.98913 0.75021 0.85561 0.85547 0.80544 0.72007 0.80268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.15 13.29 21.45 0.28 -54.86 16 2 C 0.00 0.21 5.46 84.66 0.46 0.68 16 3 Si 0.98 41.57 29.54 68.60 2.03 43.60 16 4 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.56 -29.45 9.28 25.60 0.24 -29.22 16 8 H 0.09 4.09 7.60 -2.91 -0.02 4.07 16 9 C 0.27 14.18 5.43 85.64 0.46 14.64 16 10 N -0.70 -28.14 5.55 -466.79 -2.59 -30.73 16 11 C 0.50 19.48 7.91 87.66 0.69 20.17 16 12 O -0.58 -28.47 16.50 16.02 0.26 -28.21 16 13 C 0.06 1.68 5.85 71.24 0.42 2.10 16 14 O -0.34 -10.16 9.65 -52.00 -0.50 -10.66 16 15 C 0.55 14.71 7.91 69.92 0.55 15.26 16 16 O -0.51 -14.55 16.64 19.32 0.32 -14.23 16 17 C -0.01 -0.15 7.06 40.16 0.28 0.14 16 18 C -0.06 -1.34 10.58 22.58 0.24 -1.10 16 19 C -0.07 -1.61 8.19 22.89 0.19 -1.43 16 20 O -0.18 -3.21 10.68 -11.51 -0.12 -3.33 16 21 C 0.04 0.44 12.02 66.96 0.80 1.24 16 22 C -0.22 -3.01 10.89 22.19 0.24 -2.76 16 23 C 0.02 0.42 8.11 39.33 0.32 0.74 16 24 N -0.52 -11.54 6.19 -176.24 -1.09 -12.63 16 25 H 0.43 8.91 8.96 -92.71 -0.83 8.08 16 26 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 27 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 28 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.41 13.33 8.32 -92.70 -0.77 12.56 16 30 H 0.13 2.86 8.13 -2.39 -0.02 2.84 16 31 H 0.13 2.86 8.13 -2.39 -0.02 2.84 16 32 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 33 H 0.26 -0.39 8.06 -2.91 -0.02 -0.42 16 34 H 0.18 1.47 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -76.73 317.95 3.07 -73.66 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -0.42 Total: 16.93 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 4.90 Total: 20.46 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -3.40 Total: -98.22 kcal Atomic # 8 Polarization: -56.39 SS G_CDS: -0.04 Total: -56.43 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -76.73 3.07 -73.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786034000.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.509 kcal (2) G-P(sol) polarization free energy of solvation -76.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds