Wall clock time and date at job start Tue Mar 31 2020 02:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99734 * 2 1 4 4 H 1.48500 * 109.47041 * 269.99708 * 3 2 1 5 5 H 1.48496 * 109.47126 * 29.99944 * 3 2 1 6 6 H 1.48504 * 109.47259 * 149.99850 * 3 2 1 7 7 C 1.37878 * 120.00372 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00072 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99867 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47092 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00041 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99699 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00035 * 179.97438 * 11 10 9 14 14 S 1.80998 * 109.46986 * 180.02562 * 13 11 10 15 15 C 1.76195 * 99.99854 * 180.02562 * 14 13 11 16 16 N 1.31865 * 120.23475 * 359.97344 * 15 14 13 17 17 C 1.33697 * 121.25476 * 180.02562 * 16 15 14 18 18 C 1.34747 * 121.35885 * 359.97438 * 17 16 15 19 19 N 1.37129 * 119.92658 * 0.02562 * 18 17 16 20 20 C 1.36055 * 133.66053 * 180.34169 * 19 18 17 21 21 C 1.35441 * 107.12693 * 180.10177 * 20 19 18 22 22 N 1.33374 * 108.54066 * 359.57551 * 21 20 19 23 23 C 1.32138 * 109.13934 * 0.26519 * 22 21 20 24 24 H 0.96998 * 120.00288 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47066 * 60.00182 * 9 7 2 26 26 H 1.08996 * 109.47118 * 300.00137 * 9 7 2 27 27 H 0.97001 * 119.99560 * 0.02562 * 10 9 7 28 28 H 1.09003 * 109.46622 * 60.00653 * 13 11 10 29 29 H 1.08992 * 109.47023 * 300.00181 * 13 11 10 30 30 H 1.08007 * 119.32131 * 179.97438 * 17 16 15 31 31 H 1.08003 * 120.03855 * 179.97438 * 18 17 16 32 32 H 1.07999 * 126.43707 * 359.94085 * 20 19 18 33 33 H 1.08002 * 125.73240 * 179.84682 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5616 -5.1050 0.0011 13 6 2.7333 -6.0287 0.0005 14 16 1.8284 -7.5963 0.0006 15 6 3.1782 -8.7288 0.0007 16 7 4.4191 -8.2828 0.0001 17 6 5.4585 -9.1237 -0.0004 18 6 5.2798 -10.4593 0.0002 19 7 4.0112 -10.9798 0.0008 20 6 3.5158 -12.2470 0.0074 21 6 2.1651 -12.1472 0.0018 22 7 1.8353 -10.8549 0.0015 23 6 2.9377 -10.1264 0.0009 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8902 27 1 3.1568 -3.4353 0.0009 28 1 3.3606 -5.9708 0.8901 29 1 3.3593 -5.9711 -0.8899 30 1 6.4620 -8.7244 -0.0014 31 1 6.1349 -11.1191 -0.0007 32 1 4.0915 -13.1607 0.0130 33 1 1.4715 -12.9751 0.0024 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788509855.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:06 Heat of formation + Delta-G solvation = 42.780981 kcal Electronic energy + Delta-G solvation = -19269.266909 eV Core-core repulsion = 16035.919593 eV Total energy + Delta-G solvation = -3233.347316 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.03516 -40.55036 -39.41459 -36.22026 -35.31247 -34.41464 -31.70892 -31.61944 -30.46108 -28.75395 -25.92106 -24.72616 -24.29845 -22.94144 -21.68884 -19.99071 -19.19634 -18.80019 -17.61314 -17.56584 -17.30747 -16.90059 -16.69934 -16.46447 -15.90895 -15.51794 -15.10259 -14.75011 -14.72407 -14.52097 -14.06613 -14.02270 -13.82322 -13.44565 -12.90922 -12.79148 -12.70505 -12.23059 -11.68900 -11.49134 -11.36229 -11.09089 -10.97348 -10.81363 -10.45742 -9.92346 -9.54746 -8.59247 -8.28838 -6.45534 -0.67576 0.07472 0.15832 0.96884 1.44289 1.46599 1.51159 1.56813 1.57889 1.85745 2.29605 2.34755 2.50258 2.91387 3.06354 3.32597 3.54537 3.79679 3.91918 4.03414 4.21725 4.31948 4.37240 4.42461 4.78722 5.09109 5.14731 5.22962 5.43387 5.48822 5.63185 5.76788 5.83022 6.44721 6.63658 6.71932 6.75466 7.20859 7.36344 8.83414 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.041712 B = 0.002760 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.105463 B =10141.441313 C =10792.099147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.265 3.735 10 N -0.696 5.696 11 C 0.512 3.488 12 O -0.587 6.587 13 C -0.128 4.128 14 S 0.041 5.959 15 C 0.161 3.839 16 N -0.487 5.487 17 C 0.043 3.957 18 C 0.003 3.997 19 N -0.347 5.347 20 C -0.057 4.057 21 C 0.012 3.988 22 N -0.501 5.501 23 C 0.142 3.858 24 H 0.269 0.731 25 H -0.009 1.009 26 H -0.008 1.008 27 H 0.413 0.587 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.219 0.781 31 H 0.224 0.776 32 H 0.238 0.762 33 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.717 -25.331 0.020 30.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.143 3.857 10 N -0.346 5.346 11 C 0.297 3.703 12 O -0.468 6.468 13 C -0.279 4.279 14 S 0.280 5.720 15 C -0.110 4.110 16 N -0.207 5.207 17 C -0.099 4.099 18 C -0.124 4.124 19 N -0.021 5.021 20 C -0.192 4.192 21 C -0.142 4.142 22 N -0.223 5.223 23 C -0.106 4.106 24 H 0.078 0.922 25 H 0.009 0.991 26 H 0.010 0.990 27 H 0.249 0.751 28 H 0.161 0.839 29 H 0.161 0.839 30 H 0.236 0.764 31 H 0.240 0.760 32 H 0.254 0.746 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 15.072 -24.288 0.022 28.585 hybrid contribution 1.985 0.062 -0.013 1.986 sum 17.057 -24.226 0.008 29.629 Atomic orbital electron populations 1.70135 1.08299 1.28613 1.49914 1.26070 0.95768 1.03930 0.93860 0.85147 0.78504 0.76919 0.78588 1.19612 1.21055 1.17815 1.21610 0.94406 0.90384 1.52952 0.89577 1.18633 0.88630 0.83969 0.94512 1.46056 1.11628 1.04807 1.72074 1.20332 0.88811 0.84652 0.76459 1.90703 1.18716 1.85066 1.52334 1.23615 1.01043 0.92413 1.10878 1.87144 1.02259 0.94464 1.88139 1.23075 0.97680 0.91071 0.99171 1.68679 0.97060 1.38491 1.16436 1.22869 0.99581 0.88540 0.98944 1.23293 0.86231 0.97631 1.05198 1.43106 1.07400 1.08199 1.43445 1.23590 0.95954 0.86752 1.12941 1.23421 0.94834 0.93609 1.02306 1.70489 1.26245 1.04994 1.20566 1.21036 0.84548 0.92640 1.12341 0.92226 0.99066 0.99038 0.75104 0.83897 0.83903 0.76448 0.75997 0.74578 0.76886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.99 42.18 29.54 68.60 2.03 44.21 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 7 C -0.56 -30.04 9.28 25.60 0.24 -29.80 16 8 H 0.09 4.17 7.60 -2.91 -0.02 4.15 16 9 C 0.27 14.56 5.43 85.63 0.46 15.03 16 10 N -0.70 -29.34 5.55 -466.79 -2.59 -31.93 16 11 C 0.51 21.00 7.85 87.66 0.69 21.69 16 12 O -0.59 -29.82 15.86 -3.03 -0.05 -29.87 16 13 C -0.13 -3.81 5.34 71.24 0.38 -3.42 16 14 S 0.04 1.35 21.23 -56.49 -1.20 0.15 16 15 C 0.16 4.47 7.05 85.57 0.60 5.08 16 16 N -0.49 -10.98 9.26 -191.76 -1.78 -12.76 16 17 C 0.04 0.58 11.06 83.61 0.92 1.50 16 18 C 0.00 0.03 11.03 83.06 0.92 0.95 16 19 N -0.35 -6.17 2.96 -351.61 -1.04 -7.21 16 20 C -0.06 -0.72 11.80 83.39 0.98 0.27 16 21 C 0.01 0.21 11.84 83.81 0.99 1.21 16 22 N -0.50 -14.16 11.30 -193.69 -2.19 -16.34 16 23 C 0.14 3.83 7.62 134.44 1.02 4.85 16 24 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 25 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 26 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 27 H 0.41 14.06 8.32 -92.71 -0.77 13.29 16 28 H 0.14 3.57 8.13 -2.39 -0.02 3.55 16 29 H 0.14 3.57 8.13 -2.40 -0.02 3.55 16 30 H 0.22 1.05 8.06 -2.91 -0.02 1.03 16 31 H 0.22 -0.03 8.06 -2.91 -0.02 -0.05 16 32 H 0.24 0.37 8.06 -2.91 -0.02 0.35 16 33 H 0.21 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -83.26 313.06 1.53 -81.73 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.39 Total: 10.08 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 7.68 Total: 18.00 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -7.31 Total: -124.29 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.05 Total: -29.87 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -1.20 Total: 0.15 kcal Total: -83.26 1.53 -81.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788509855.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.508 kcal (2) G-P(sol) polarization free energy of solvation -83.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds